Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e07
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828...    29   2.3  
01_05_0215 + 19374279-19374327,19374629-19374633,19376902-193769...    29   3.9  

>05_07_0003 +
           26981956-26982190,26982258-26982318,26982739-26982833,
           26983304-26983479,26983738-26983959,26984041-26984279,
           26984786-26985311,26985407-26985680,26985759-26986410,
           26986508-26986736,26986841-26987107,26987180-26987443,
           26987526-26988194
          Length = 1302

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -1

Query: 257 LQIKMVI*KELNKIIMEKTFIIFNNIIPVIKETKYKNIANHGTVL 123
           ++ + V+ + LN+I+ +KT I+  + +  IK+    ++  HG V+
Sbjct: 563 MESERVVQEALNRIMQDKTTIVVAHRLSTIKDADIISVVQHGRVV 607


>01_05_0215 +
           19374279-19374327,19374629-19374633,19376902-19376956,
           19377159-19377334,19378020-19378241,19378334-19378572,
           19379201-19379726,19379801-19380074,19380524-19381187,
           19381604-19381832,19381924-19382190,19382308-19382496,
           19382664-19383308
          Length = 1179

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/45 (24%), Positives = 27/45 (60%)
 Frame = -1

Query: 257 LQIKMVI*KELNKIIMEKTFIIFNNIIPVIKETKYKNIANHGTVL 123
           ++ + V+ + LNK+++E+T II  + +  +K     ++  HG ++
Sbjct: 469 MESERVVQEALNKVMLERTTIIVAHRLSTVKNADMISVLQHGKLV 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,376,816
Number of Sequences: 37544
Number of extensions: 181877
Number of successful extensions: 262
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)