Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e05
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    26   0.12 
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    22   2.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   3.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   4.6  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 26.2 bits (55), Expect = 0.12
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 103 APIERVKLLLQVQHVSKQIAAPALQGYRRCLRPYP 207
           +P  ++++  + ++++ Q A P +  YR C RPYP
Sbjct: 230 SPPPQLEVNERKENLTCQPAVPYVPFYRYCYRPYP 264


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 191 HRRYPCNAGAAIC 153
           H R PC AG+A C
Sbjct: 85  HEREPCIAGSAPC 97


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 166 PALQGYRRCLRPYPQGAGSPFILAW*LRQRHQVLPDPGAQLR 291
           P+L   R  L PYPQ   + ++ +  L Q +Q+     A +R
Sbjct: 27  PSLSDTRPML-PYPQNYINSYLFSLSLAQNNQLFTHHKAPIR 67


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 335 CQHRRGTPACTCP 297
           CQ + G  AC CP
Sbjct: 432 CQDKLGDYACYCP 444


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,758
Number of Sequences: 336
Number of extensions: 1382
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)