Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e05
         (406 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   130   6e-33
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   130   6e-33
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   9.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   9.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  130 bits (314), Expect = 6e-33
 Identities = 60/80 (75%), Positives = 63/80 (78%)
 Frame = +2

Query: 167 QRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQ 346
           QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQ
Sbjct: 51  QRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQ 110

Query: 347 FWRYFXXXXXXXXXXXXTSL 406
           F RYF            TSL
Sbjct: 111 FLRYFVGNLASGGAAGATSL 130



 Score = 88.2 bits (209), Expect = 3e-20
 Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +1

Query: 19  MSXLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIA-APALQGYRRCL 195
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+     +G   C 
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 196 RPYPQGAGSPFILAW 240
              P+  G  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 25.8 bits (54), Expect = 0.19
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 173 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 262
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 20.6 bits (41), Expect = 7.0
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 167 QRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 301
           + + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 154 REFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  130 bits (314), Expect = 6e-33
 Identities = 60/80 (75%), Positives = 63/80 (78%)
 Frame = +2

Query: 167 QRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQ 346
           QRYKG++D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQ
Sbjct: 51  QRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQ 110

Query: 347 FWRYFXXXXXXXXXXXXTSL 406
           F RYF            TSL
Sbjct: 111 FLRYFVGNLASGGAAGATSL 130



 Score = 88.2 bits (209), Expect = 3e-20
 Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = +1

Query: 19  MSXLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIA-APALQGYRRCL 195
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+     +G   C 
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 196 RPYPQGAGSPFILAW 240
              P+  G  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score = 25.8 bits (54), Expect = 0.19
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 173 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 262
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 20.6 bits (41), Expect = 7.0
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 167 QRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 301
           + + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 154 REFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = -3

Query: 251 WRSYHARMKGDPAPWGYGRRHRRYPCNAGAAICLLTCCTWSSS--LTRSMGATAVLE 87
           W S  A+      P  YG  H +Y     A    L C    SS  ++ + G T V +
Sbjct: 315 WGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLACAAEPSSDAVSTTSGTTTVTD 371


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 173 NAGAAICLLTCCTWS 129
           N+GA   ++  CTWS
Sbjct: 378 NSGATDKIIRWCTWS 392


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 173 NAGAAICLLTCCTWS 129
           N+GA   ++  CTWS
Sbjct: 378 NSGATDKIIRWCTWS 392


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 173 NAGAAICLLTCCTWS 129
           N+GA   ++  CTWS
Sbjct: 378 NSGATDKIIRWCTWS 392


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 112 ERVKLLLQVQHVSKQIAAP 168
           +R+  ++   HV+KQ+A+P
Sbjct: 335 DRLTAMMHHLHVAKQMASP 353


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 276 WVGKYLMTLAKLPRQNERR 220
           WVG     LA+L R  ER+
Sbjct: 228 WVGGESEALARLERHLERK 246


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 380 RRPDYQRSNARTASSCQHRR 321
           R P Y R + R A+  QH++
Sbjct: 79  RFPPYNRMDMRNATYYQHQQ 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,086
Number of Sequences: 438
Number of extensions: 1634
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)