Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e02
         (522 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7NCM1 Cluster: Gll2957 protein; n=1; Gloeobacter viola...    32   6.9  
UniRef50_UPI00005842DB Cluster: PREDICTED: similar to MGC80550 p...    32   9.2  
UniRef50_Q684A0 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  
UniRef50_Q8LH61 Cluster: OJ1005_B10.29 protein; n=2; Oryza sativ...    32   9.2  
UniRef50_Q5BXN9 Cluster: SJCHGC05493 protein; n=1; Schistosoma j...    32   9.2  

>UniRef50_Q7NCM1 Cluster: Gll2957 protein; n=1; Gloeobacter
           violaceus|Rep: Gll2957 protein - Gloeobacter violaceus
          Length = 288

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +2

Query: 245 GEDLRTAGVSARKRVSPNVLVQNLYRFMSNIYIHEIVTS 361
           G D RTAGV+   ++SP+ LVQ L    SN+Y+   V++
Sbjct: 136 GLDTRTAGVAGAAKMSPHSLVQELLN-RSNMYLWGFVSN 173


>UniRef50_UPI00005842DB Cluster: PREDICTED: similar to MGC80550
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to MGC80550 protein -
           Strongylocentrotus purpuratus
          Length = 519

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 315 YTGLCLIFIFMKLSLVRFWFVRISSLIDFHFHKDYKPIINKYVINILFSNLP*EQR 482
           Y G+  +   + + LV FW++R++    FH+     P +  Y  + L +  P   R
Sbjct: 14  YIGIANLLTTITICLVTFWYIRMNYGASFHYRLPPGPPVIPYPFDFLMALFPSSNR 69


>UniRef50_Q684A0 Cluster: Putative uncharacterized protein; n=1;
           Sulfolobus virus STSV1|Rep: Putative uncharacterized
           protein - Sulfolobus virus STSV1
          Length = 270

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 18/64 (28%), Positives = 36/64 (56%)
 Frame = +3

Query: 306 FRTYTGLCLIFIFMKLSLVRFWFVRISSLIDFHFHKDYKPIINKYVINILFSNLP*EQRQ 485
           ++TYT   +I +  K  + +  ++R SSL+  HF ++ KP I  Y + I+      ++++
Sbjct: 88  YKTYTPDSII-LSKKTMITKRKYIRKSSLVIEHFVEELKPAIPGYDLLIIADKKKSKEKK 146

Query: 486 NLLN 497
            L+N
Sbjct: 147 RLIN 150


>UniRef50_Q8LH61 Cluster: OJ1005_B10.29 protein; n=2; Oryza sativa
           (japonica cultivar-group)|Rep: OJ1005_B10.29 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 434

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 282 RGSVRMFLFRTYTGLCLIFIFMKLSLVRFWFVRISSLI 395
           +GSV + L  TY G C + +F   S++  W +R+  LI
Sbjct: 258 KGSVSIQLSHTYIGACTVGVFDSYSVMNNWHMRLLVLI 295


>UniRef50_Q5BXN9 Cluster: SJCHGC05493 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC05493 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 418

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -3

Query: 400 KSIREEIRTNQNRTSDNFMNINIRHKPV*VLNKNIRTDPLPSRN-TSCAKIFALSWYFPC 224
           K I EE+ T    T+DN  N+NI   PV +   +   DP  ++     AK+ A   +  C
Sbjct: 171 KHINEEVETTPEITNDNLFNLNI---PVAIKVLSDSADPQTNKELLEEAKVMATVDHPCC 227

Query: 223 ILFGDKLLKKSIQLVS 176
           + F    L   +QL++
Sbjct: 228 VRFLALCLTSKLQLIT 243


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,851,049
Number of Sequences: 1657284
Number of extensions: 9667698
Number of successful extensions: 20639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20634
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)