Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e02
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   3.0  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   3.0  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   6.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.0  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    25   9.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.0  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 284 RVSPNVLVQNLYRFMSNIYIHEIVTSPVLV 373
           RVSP +++QN+  F S  Y   ++  P+++
Sbjct: 80  RVSPGLIIQNMVSFHST-YFFNVLLPPIIL 108


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 387 SLIDFHFHKDYKPIINKYVINIL 455
           SL +FHF K YK   + YVI++L
Sbjct: 328 SLFNFHFSKLYKAYGDIYVIDLL 350


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 83  NKYTFLNILCFFLFVM*QYRFLEV 12
           ++Y F+N L F+LF    ++F+E+
Sbjct: 776 DRYDFVNDLVFYLFRNNMFQFIEI 799


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 452  NIYDIFIDNRFVVFMKVKIYKRRNPDKPEP 363
            N+Y   I N   + +   I++R+   KP P
Sbjct: 1218 NVYKYVIGNIIYILLDAPIFRRQTSGKPYP 1247


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 431 DNRFVVFMKVKIYKRRNPDKPEP 363
           DN+ + F+K  IY R +  +P+P
Sbjct: 222 DNKDIQFIKKPIYTRTSEPRPKP 244


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 452  NIYDIFIDNRFVVFMKVKIYKRRNPDKPEP 363
            N+Y  ++DN   V +   +++R+   +P P
Sbjct: 1216 NVYHHYLDNIKYVLLDAPVFRRQTSKEPYP 1245


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = -3

Query: 511 KVNYVFSKFCLCSYGRFENRIFMTYLLIIGL*SL*K*KSIREEIRTNQNRTSDNFMN 341
           +++++  + CL   GRF   +  + ++I+GL S    ++   E  +N   + +NF N
Sbjct: 81  ELDFMIEQICLSKNGRFLAVVGKSKIVILGLRSKLSEQNPLAESVSNFGESVNNFSN 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,701
Number of Sequences: 5004
Number of extensions: 45852
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)