Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e02
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936...    29   1.7  
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           29   3.0  
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135     29   3.0  
01_05_0645 - 23899579-23904483                                         29   3.0  
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759...    28   4.0  
05_04_0290 + 19883904-19885109                                         27   6.9  

>09_04_0037 +
           13992103-13992624,13993001-13993180,13993423-13993691,
           13994120-13995773
          Length = 874

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 219 RMHGKYHDRAKIFAQLVFLLGRGSVRMFLFRTYTGLCLIFIFMKLSLVRFWFVRISSLI 395
           R H  Y   + + A LV  L   +V+   F   T L L    M+ SL+ FW +  +SLI
Sbjct: 665 RSHNAYRASSYVVASLVVYLPFFAVQGLTFAVITKLMLR---MESSLLHFWVILFASLI 720


>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -3

Query: 331 RHKPV*VLNKNIRTDPLPSRNTSCAKIFALSWYFPCILFGDKLLKKSIQ 185
           + KP  + NKNIRT    S+ T C K   L  +     F  K +KK IQ
Sbjct: 463 KRKPKRIYNKNIRTQDTESKETICYKC-GLKGHIANRCFKSK-VKKEIQ 509


>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
          Length = 1275

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -3

Query: 331 RHKPV*VLNKNIRTDPLPSRNTSCAKIFALSWYFPCILFGDKLLKKSIQ 185
           + KP  + NKNIRT    S+ T C K   L  +     F  K +KK IQ
Sbjct: 782 KRKPKRIYNKNIRTQDTESKETICYKC-GLKGHIANRCFKSK-VKKEIQ 828


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -3

Query: 331 RHKPV*VLNKNIRTDPLPSRNTSCAKIFALSWYFPCILFGDKLLKKSIQ 185
           + KP  + NKNIRT    S+ T C K   L  +     F  K +KK IQ
Sbjct: 702 KRKPKRIYNKNIRTQDTESKETICYKC-GLKGHIANRCFKSK-VKKEIQ 748


>09_03_0101 +
           12374771-12374926,12375505-12375731,12375816-12375971,
           12376066-12376251,12376407-12376591,12376984-12376991
          Length = 305

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +3

Query: 237 HDRAKIFAQLVFLLGRGSVRMFLFRTYTGLCLIFIFMKLSLVRFWFVRISSL-----IDF 401
           HD + IF ++  +    S        +      +I ++L +  FW +R +S      +D 
Sbjct: 192 HDASDIFLEIGKMSKYSSCEGLAVAAFLLFVASWILLRLIIFPFWILRSTSYEVLLTLDK 251

Query: 402 HFHKDYKPIINKYVIN-ILFSNL 467
             HK Y PI   YV N +LFS L
Sbjct: 252 EKHKFYGPIY-YYVFNSLLFSLL 273


>05_04_0290 + 19883904-19885109
          Length = 401

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 264 AVRRSSPYRGIFHAFYLVINCSRRAFNLSAFVLCFS 157
           A+  SSP     HA  L I      F  SA VLC+S
Sbjct: 57  ALTGSSPLAASAHALALKIGAQGNLFVASALVLCYS 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,665
Number of Sequences: 37544
Number of extensions: 234203
Number of successful extensions: 419
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)