Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e02
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_42756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_46186| Best HMM Match : zf-RanBP (HMM E-Value=0.45)                 28   4.1  
SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 28   5.4  
SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_51787| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_50441| Best HMM Match : POR_N (HMM E-Value=3.5)                     27   9.4  
SB_42387| Best HMM Match : CH (HMM E-Value=2.7)                        27   9.4  
SB_37137| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)            27   9.4  
SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67)                    27   9.4  
SB_58809| Best HMM Match : CXC (HMM E-Value=5.7)                       27   9.4  
SB_49493| Best HMM Match : CXC (HMM E-Value=9.4)                       27   9.4  
SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)                   27   9.4  
SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)                      27   9.4  
SB_12654| Best HMM Match : CXC (HMM E-Value=5.7)                       27   9.4  
SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_42824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -1

Query: 306 TRTFGLTLFRAETPAVRRSSPYRGIFHAFYLVINCSRRAFN--LSAFVLCFSLKYLYSEL 133
           T  +G   +R +TP +     +R I H F      +++ FN  + AF   F  ++ Y +L
Sbjct: 11  TVDYGRRGYRRQTPLLNAKETWRKIAHTF---TGAAKKDFNVTIEAFFSYFKAQHQYPQL 67

Query: 132 --FATAIEDAIIAYR 94
              A ++ +   AYR
Sbjct: 68  ESIALSVHEESTAYR 82


>SB_42756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   IIN+  I I +S
Sbjct: 290 RFLSLIDKHFSKDHKLRKIINRNTIKISYS 319


>SB_46186| Best HMM Match : zf-RanBP (HMM E-Value=0.45)
          Length = 339

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+ +I I +S
Sbjct: 222 RFLSLIDKHFPKDHKLRKIFNRNIIKISYS 251


>SB_56014| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 300

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -3

Query: 223 ILFGDKLLKKSIQLVSIRTLFQLKISLFRVIC-HRH*RCYNRIPNLR*INIPFLIYYVFF 47
           +LF D +   ++  VSI  +  L +S  RVI  + H R  + + N R + +  +I+ V  
Sbjct: 95  LLFMDAIYNVTVYFVSISMVTLLAVSADRVIALYLHLRYTSIVTNNRVVKLHIIIWTVTV 154

Query: 46  YLSCNNTVSLKSLKM 2
             +C + ++  S+ +
Sbjct: 155 PFTCLSLLASHSVML 169


>SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R+ SLID HF KD+K   I N+  I I +S
Sbjct: 159 RLLSLIDKHFPKDHKLRKIFNRNTIKISYS 188


>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 101 RFLSLIDKHFRKDHKLSKIFNRNTIKISYS 130


>SB_51787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 168 RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 197


>SB_50441| Best HMM Match : POR_N (HMM E-Value=3.5)
          Length = 439

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 387 RFLSLIDKHFPKDHKLRKIFNRTTIKISYS 416


>SB_42387| Best HMM Match : CH (HMM E-Value=2.7)
          Length = 703

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 106 RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 135


>SB_37137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 61  RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 90


>SB_22454| Best HMM Match : Ribosomal_L35p (HMM E-Value=4.5)
          Length = 214

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 83  RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 112


>SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378  RISSLIDFHFHKDYK--PIINKYVINILFS 461
            R  SLID HF KD+K   I N+  I I +S
Sbjct: 1091 RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 1120


>SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67)
          Length = 336

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 133 RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 162


>SB_58809| Best HMM Match : CXC (HMM E-Value=5.7)
          Length = 202

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 95  RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 124


>SB_49493| Best HMM Match : CXC (HMM E-Value=9.4)
          Length = 201

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 91  RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 120


>SB_32372| Best HMM Match : rve (HMM E-Value=4.1e-19)
          Length = 1562

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 106 RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 135


>SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)
          Length = 525

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 157 RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 186


>SB_12654| Best HMM Match : CXC (HMM E-Value=5.7)
          Length = 202

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 95  RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 124


>SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 378 RISSLIDFHFHKDYK--PIINKYVINILFS 461
           R  SLID HF KD+K   I N+  I I +S
Sbjct: 288 RFLSLIDKHFPKDHKLRKIFNRNTIKISYS 317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,004,551
Number of Sequences: 59808
Number of extensions: 297224
Number of successful extensions: 645
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)