Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e02
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67735-2|CAA91530.2|  403|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical ...    27   6.2  
U80027-10|AAC48118.3|  295|Caenorhabditis elegans Serpentine rec...    27   8.1  

>Z67735-2|CAA91530.2|  403|Caenorhabditis elegans Hypothetical
           protein C15A7.1 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 296 NVLVQNLYRFMSNIYIHEIVTSPVLVCPDFFSYRFSL 406
           +V+ ++LY FM+ I +H++   P  +   F S+   L
Sbjct: 223 DVVTEDLYLFMNRIVLHDLTREPRSLVRSFVSFTIVL 259


>U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical
           protein K05F1.6b protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 254 LRTAGVSARKRVSPNVLVQNLYRFMSNIYIHEIVTSPVLVCPDFFS 391
           L TA   A K V+P    Q  Y F  ++ +  IVT   LVC  +F+
Sbjct: 82  LETAMSEAWKDVAPKKKCQ-AYHFEKDVMVETIVTDFNLVCDSWFA 126


>U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical
           protein K05F1.6a protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 254 LRTAGVSARKRVSPNVLVQNLYRFMSNIYIHEIVTSPVLVCPDFFS 391
           L TA   A K V+P    Q  Y F  ++ +  IVT   LVC  +F+
Sbjct: 228 LETAMSEAWKDVAPKKKCQ-AYHFEKDVMVETIVTDFNLVCDSWFA 272


>AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical
           protein F59B1.4 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 231 FHAFYLVINCSRRAFNLSAFVLCFSLKYLY-SELFATAIEDAII 103
           F AFYL+I  SRR   L  + L  S  + Y S +F   I + ++
Sbjct: 33  FLAFYLIIKHSRRETKLFKYTLLISHLFFYVSNIFYGTIANNLL 76


>U80027-10|AAC48118.3|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 5 protein.
          Length = 295

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 203 AQEEHSTCQHSYFVSA*NIFIQSYLP 126
           A EEHS   H   + A N+F+  +LP
Sbjct: 212 AGEEHSKINHIALIDAANVFLCDFLP 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,707,032
Number of Sequences: 27780
Number of extensions: 245542
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)