Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e02
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.12 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.27 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.27 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    24   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 261 QLVFLLGRGSVRMFLFRTYTGLCLIFIFMKLSLVRFW 371
           ++VF+L R  +  +LF TY   CLI I   +S V FW
Sbjct: 235 EVVFVLKR-RLGYYLFHTYIPTCLIVI---MSWVSFW 267


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 315 YTGLCLIFIFMKLSLVRFWFVRISSLIDFH---FHKDYKP 425
           +TG+CL F+F   +L+ F  V  +S  D H     K Y P
Sbjct: 307 WTGVCLTFVFG--ALLEFALVNYASRSDMHSDNIEKKYPP 344


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 315 YTGLCLIFIFMKLSLVRFWFVRISSLIDFH---FHKDYKP 425
           +TG+CL F+F   +L+ F  V  +S  D H     K Y P
Sbjct: 307 WTGVCLTFVFG--ALLEFALVNYASRSDMHSDNIEKKYPP 344


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 310 LNKNIRTDPLPSRNTSCAKIFALSW 236
           L  +IRT  LP +   C K F+  W
Sbjct: 32  LKMHIRTHTLPCKCHLCGKAFSRPW 56


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -1

Query: 231 FHAFYLVINCSRRAFNLSAFVLCFSLKYLY 142
           F  FY     +R   N   F   FS+  LY
Sbjct: 121 FQTFYKTAAWARLRMNSGMFTTAFSIAVLY 150


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -1

Query: 231 FHAFYLVINCSRRAFNLSAFVLCFSLKYLY 142
           F  FY     +R   N   F   FS+  LY
Sbjct: 121 FQTFYKTAAWARLRMNSGMFTTAFSIAVLY 150


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 402 HFHKDYKPIINKYVINI 452
           +++ +YK +   Y+INI
Sbjct: 108 NYNNNYKKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 402 HFHKDYKPIINKYVINI 452
           +++ +YK +   Y+INI
Sbjct: 108 NYNNNYKKLYKNYIINI 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,144
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)