Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d18
         (352 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q64N87 Cluster: Putative uncharacterized protein; n=1; ...    31   7.2  
UniRef50_Q98R86 Cluster: GLYCEROL-3-PHOSPHATE DEHYDROGENASE; n=1...    30   9.5  
UniRef50_Q96MK2 Cluster: Uncharacterized protein C20orf175; n=17...    30   9.5  

>UniRef50_Q64N87 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides fragilis|Rep: Putative uncharacterized
           protein - Bacteroides fragilis
          Length = 52

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +3

Query: 207 NQTVNIFCKLKNKITTIRPIITIDHF*YY*STFCCQYNIKF 329
           + +V I CK++N++T IR + T+D   +  + + C  N+++
Sbjct: 15  SSSVRISCKIRNRVTLIRNLYTVD---FVVTAYFCIVNVEY 52


>UniRef50_Q98R86 Cluster: GLYCEROL-3-PHOSPHATE DEHYDROGENASE; n=1;
           Mycoplasma pulmonis|Rep: GLYCEROL-3-PHOSPHATE
           DEHYDROGENASE - Mycoplasma pulmonis
          Length = 323

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 296 SVVLKVIYCNYRAYCSNLIL*FTKYINCLICQKYKKN 186
           S +L  ++ NY A CS L++ F + IN  I  KY +N
Sbjct: 198 SGILSAVFKNYNALCSALVIAFQE-INQFIISKYGQN 233


>UniRef50_Q96MK2 Cluster: Uncharacterized protein C20orf175; n=17;
           Tetrapoda|Rep: Uncharacterized protein C20orf175 - Homo
           sapiens (Human)
          Length = 946

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 141 CIFESFKFLRAEFTLDCFDLF 79
           CI ESF FL A+F LD   LF
Sbjct: 566 CILESFAFLNADFALDELSLF 586


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,345,748
Number of Sequences: 1657284
Number of extensions: 3624212
Number of successful extensions: 7774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7772
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)