Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d18
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   0.64 
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   2.6  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   3.4  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    24   7.9  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -3

Query: 344  FVISIKFNVILTAKRTSVVLKVIYCNYRAYCSNLIL*FTKYINCLI 207
            F+    FN ILTA  T + LK + C  + + +NLIL   + +N L+
Sbjct: 1108 FISLDSFNTILTALSTILNLKELECEPKDH-ANLILKIIQILNGLL 1152


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 152 IVCSVYLKVLNFYELNSLWIAL 87
           ++ SV   V+NF E+N LW+ +
Sbjct: 126 VLDSVKFLVINFTEMNKLWVRI 147


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 170 KLYL*FIVCSVYLKVLNFYELNSLWIALIYFYARLM 63
           +LY+  I   + L + N   LN+ W AL+ + +  M
Sbjct: 96  RLYMCLISLLIDLSIWNIVPLNARWSALLLYSSSFM 131


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 3   RSHSTNI*MEKAVNISRSQSHQSSVKINQSN 95
           R  STN   E+  +I +S ++ S+V +NQ N
Sbjct: 391 RFTSTNTEDEQESDIPQSDANDSTVNLNQPN 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,138,351
Number of Sequences: 5004
Number of extensions: 17512
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)