Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d18
         (352 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0577 - 30100084-30100251,30100474-30100548,30100631-301007...    26   9.6  

>02_05_0577 -
           30100084-30100251,30100474-30100548,30100631-30100755,
           30101538-30101609,30102016-30102108,30102333-30102419,
           30103049-30103135,30103448-30103522,30104142-30104238
          Length = 292

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 59  VSSV*RKNKSKQSRVNSARKNLKLSNIQNKQ 151
           + ++ R+ K  QSR+ S  ++LK +N+QN +
Sbjct: 103 LENIKRRTKMAQSRLVSDSESLKNANLQNNE 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,723,644
Number of Sequences: 37544
Number of extensions: 73403
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)