Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d15
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    27   0.73 
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    26   1.7  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   1.7  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   2.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   3.9  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    24   6.8  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    24   6.8  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    24   6.8  

>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 231 PLLLRLIYAIHCSLNNFSLYFHLLV 305
           PL+LRL + +   L +F+L  HLLV
Sbjct: 15  PLVLRLFFLVVFGLYSFTLILHLLV 39


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 164 RLHTRPPLQHRQLLYKRSALSAATSTSPY 250
           RLHT+ P  H+Q     + +SA+T+T  Y
Sbjct: 217 RLHTQNPTFHQQNQLVSTVMSASTTTLRY 245


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 134 PQQWEGYGTWRLHTRPP--LQHRQLLYKRSALSAATSTSPYLCNSL 265
           P Q E Y + R +   P  LQ++    ++   S+A  T+P  C+SL
Sbjct: 374 PMQVENYASSRNYPANPFFLQNQSTSQQQPERSSAVKTTPMKCSSL 419


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 99  RAALPASDGPATPSSGRATVRGVFTHDRHSSTASCSTSEAPC-PLPLL 239
           RA+LP S+   + SS  A V      DR S     + + A C PLP++
Sbjct: 365 RASLPYSNKKDSDSSPTALVMDFTATDRISKPLDPTEAPADCSPLPIV 412


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +3

Query: 111 PASDGPATPSSGRATVRGVFTHDRHSSTASCSTSEAPC-------PLPLLLRLIYAIHCS 269
           PAS+GP  P+ G   V G+      +S AS +   AP        P P ++      + +
Sbjct: 107 PASNGPTPPNPGNGNV-GLNNPSYMNSQASPNIMNAPLQRDTSVPPAPSMVHPHTNTNAN 165

Query: 270 LNNFSLYFHLLVRR*T 317
            NN  +Y + L ++ T
Sbjct: 166 SNNLKVYANQLSQQNT 181



 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 84  AYSCARAALPASDGPATPSSGRATV 158
           A S A + LP+S  P TP +  ATV
Sbjct: 307 AASFAHSKLPSSANPNTPFNSTATV 331


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 315 FIFLQASENIMKNYLVNNELHK*GEVE 235
           FI L    NI+++ L++N LH   E+E
Sbjct: 864 FIKLMKKVNILESRLLSNPLHNFSELE 890


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 105 ALPASDGPATPSSGRATVRGVFTHDRHSST 194
           ++ AS  P+TPS+G A V    T  R+  T
Sbjct: 179 SVAASPNPSTPSNGPAPVSTTATPSRNPVT 208


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 72  RF*VAYSCARAALPASDGPATPSSGRATVRGVFTHDRHSSTASCSTS 212
           R+   YS   +   ++  P TPSS  +T   + T   H+S+A+ +TS
Sbjct: 32  RYTTIYSSGSSEFTSTITPETPSSSSSTFVPIST---HTSSATNTTS 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,818
Number of Sequences: 5004
Number of extensions: 25120
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)