Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28d15
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1038 - 22485394-22485960,22486712-22487197 29 0.90
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 29 1.2
02_02_0248 - 8267332-8268276,8268338-8269288 29 1.2
03_05_0615 + 26137785-26138593,26139307-26141368 28 2.7
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 27 3.6
09_03_0049 + 11889214-11890302 27 4.8
09_03_0006 + 11426346-11426420,11426733-11427452 27 4.8
06_03_0566 - 22315070-22315093,22315160-22315377,22316801-223169... 27 4.8
06_03_0854 + 25400855-25403741,25406174-25407708 27 6.3
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 26 8.4
03_02_0202 + 6366066-6367292,6367529-6367753,6368422-6368799 26 8.4
01_06_1044 + 34082801-34084339 26 8.4
>10_08_1038 - 22485394-22485960,22486712-22487197
Length = 350
Score = 29.5 bits (63), Expect = 0.90
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 90 SCARAALPASDGPATPSSGRATVRG----VFTHDRHSSTASCSTSEAPCPLPLLLRL 248
S A A P TP SG A +RG + H +++S S + A P P +LR+
Sbjct: 57 STAAKARPTRASRRTPGSGEALLRGQVKTLLQKVHHDASSSSSCAAAAPPSPNILRI 113
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 90 SCARAALPASDGPATPSSGRATVR 161
S ARA +PAS P TP TVR
Sbjct: 134 SAARATVPASASPVTPQESTPTVR 157
>02_02_0248 - 8267332-8268276,8268338-8269288
Length = 631
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -2
Query: 312 IFLQASENIMKNYLVNNELHK*GEVEVAADRALRL*SSWRCWSGGRV 172
+ L ++I + +NEL V ++++ A+ + WR WSGG+V
Sbjct: 87 VHLGGQDSITAYNIEDNELWARHAVAMSSEAAVAVYVFWRSWSGGQV 133
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 201 CSTSEAPCPLPLLLRLIYAIH 263
CS+SE+ CP P L +L+ + H
Sbjct: 736 CSSSESDCPFPHLQKLVLSNH 756
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 77 KTLCCTRMFYIYNNHLDST 21
+T+ C +FY NN +DST
Sbjct: 135 RTIACRTLFYFVNNQVDST 153
>09_03_0049 + 11889214-11890302
Length = 362
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -3
Query: 155 RSPPTAGGRGPVRCGQRSPCTGIGYSKTLC 66
R+PP GG G GQ C Y + C
Sbjct: 54 RAPPRVGGGGGGGVGQSQACAACKYQRRKC 83
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 27.1 bits (57), Expect = 4.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 100 GLRCPHRTGPRPPAVGGLRY 159
G RCP + P PP G LR+
Sbjct: 114 GHRCPDSSAPSPPQPGALRW 133
>06_03_0566 -
22315070-22315093,22315160-22315377,22316801-22316915,
22317029-22317031
Length = 119
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 125 ARDPQQWEGYGTWRLHTRPPLQHR 196
AR+ ++WEGY WR RP ++ R
Sbjct: 7 AREAERWEGYVDWR--NRPAVRGR 28
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 177 DRHSSTASCSTSEAPCPLPLLL 242
+R ++ A SEAP P PLLL
Sbjct: 212 ERGAAAAEAEASEAPAPAPLLL 233
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 90 SCARAALPASDGPATPSSGRATVRGVFTHDRHSSTASCSTSEAPCPLPLLLRLI 251
+ A A+L + PA+P+S AT+ G ++ S AP P P L++++
Sbjct: 77 AAAAASLVVVEPPASPTSAAATILGASPAPALPTSPETSI-PAPPPPPSLVKVL 129
>03_02_0202 + 6366066-6367292,6367529-6367753,6368422-6368799
Length = 609
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 149 GYGTWRLHTRPPLQHRQLLYKRSALS 226
GYG W L P ++H LL K S +
Sbjct: 324 GYGLWLLKNCPNVKHVDLLLKSSVFT 349
>01_06_1044 + 34082801-34084339
Length = 512
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 41 CRYKTFLYNTTFLSSLFLCTGCAARIGRARD 133
C+ FL + TF+ +L T CA +GR D
Sbjct: 389 CKEDDFLPDGTFVGKGWLVTYCAYAMGRVED 419
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,606,147
Number of Sequences: 37544
Number of extensions: 195334
Number of successful extensions: 681
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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