Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d15
         (376 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK022118-1|BAB13963.1|  220|Homo sapiens protein ( Homo sapiens ...    33   0.40 
AK125454-1|BAC86168.1|  256|Homo sapiens protein ( Homo sapiens ...    31   1.6  
BC045536-1|AAH45536.1|  487|Homo sapiens TTC31 protein protein.        28   8.6  
BC036017-1|AAH36017.1|  519|Homo sapiens tetratricopeptide repea...    28   8.6  

>AK022118-1|BAB13963.1|  220|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12056 fis, clone HEMBB1002050. ).
          Length = 220

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 90  SCARAALPASDGPA-TPSSGRATVRGVFTHDRHSSTASCS 206
           S  RAALP S  PA TP+  R+  R   T  R  +T SCS
Sbjct: 168 SPGRAALPRSPRPALTPAPARSPTRRQSTRRRSGATTSCS 207


>AK125454-1|BAC86168.1|  256|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43465 fis, clone OCBBF2036476. ).
          Length = 256

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 111 PASDGPATPSSGRATVRGVFTHD--RHSSTASCSTSEAPCPLPLL 239
           P  D  A P+S R + R        RH+S +SC T  +PC   LL
Sbjct: 63  PHQDPGAAPASARLSPRSQVRPQPLRHASGSSCCTCSSPCASTLL 107


>BC045536-1|AAH45536.1|  487|Homo sapiens TTC31 protein protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 85  PIPVHGLRCPHRTGPRPPAVGGLRYVASSHXXXXXXXXXXLQAKRP 222
           P  +  LRCP  T  R P +  L +  S H           Q++RP
Sbjct: 416 PSGLPSLRCPRSTALRSPGLSPLLHYPSCHRSHPNQPLSQTQSRRP 461


>BC036017-1|AAH36017.1|  519|Homo sapiens tetratricopeptide repeat
           domain 31 protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +1

Query: 85  PIPVHGLRCPHRTGPRPPAVGGLRYVASSHXXXXXXXXXXLQAKRP 222
           P  +  LRCP  T  R P +  L +  S H           Q++RP
Sbjct: 448 PSGLPSLRCPRSTALRSPGLSPLLHYPSCHRSHPNQPLSQTQSRRP 493


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,098,856
Number of Sequences: 237096
Number of extensions: 1032692
Number of successful extensions: 3142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3142
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)