Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d15
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote...    29   1.1  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    27   4.4  

>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
            protein F45E10.1b protein.
          Length = 1549

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117  SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
            ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 1077 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 1109


>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
            protein F45E10.1a protein.
          Length = 1583

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117  SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
            ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 1111 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 1143


>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
            protein F45E10.1d protein.
          Length = 1520

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117  SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
            ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 1048 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 1080


>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
            protein F45E10.1c protein.
          Length = 1654

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117  SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
            ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 1182 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 1214


>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical protein
            F45E10.1b protein.
          Length = 1549

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117  SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
            ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 1077 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 1109


>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical protein
            F45E10.1a protein.
          Length = 1583

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117  SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
            ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 1111 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 1143


>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical protein
            F45E10.1d protein.
          Length = 1520

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117  SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
            ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 1048 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 1080


>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical protein
            F45E10.1c protein.
          Length = 1654

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117  SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
            ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 1182 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 1214


>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical
           protein F45E10.1e protein.
          Length = 1234

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117 SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
           ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 762 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 794


>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
            UNC-53 protein.
          Length = 1583

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 117  SDGPATPSSGRATVRGVFTHDRHSSTASCSTSEA 218
            ++GPAT +S RA++  ++  D H   A+CS++ A
Sbjct: 1111 TNGPATRASSRASIPVIY-DDEHVYDAACSSTSA 1143


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 114 ASDGPATPSSGRATVRGVFTHDRHSSTASCSTSEAPCPLPLLLRLIYA 257
           AS    TPS+   T    ++ +  SST S +TS  P P P     + A
Sbjct: 295 ASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTATVLA 342


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 114 ASDGPATPSSGRATVRGVFTHDRHSSTASCSTSEAPCPLPLLLRLIYA 257
           AS    TPS+   T    ++ +  SST S +TS  P P P     + A
Sbjct: 277 ASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTATVLA 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,976,307
Number of Sequences: 27780
Number of extensions: 152779
Number of successful extensions: 564
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)