Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d15
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.67 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   1.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   2.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   3.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 170  EDATYRSPPTAGGRGPVRCGQRSPCTGIGYS 78
            ED +YR P  +GGR      +R P   +  S
Sbjct: 1350 EDESYRGPSASGGRPVPERPERVPTVDLSPS 1380



 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 102 AALPASDGPATPSSGRAT 155
           AA     GPATPS+  AT
Sbjct: 230 AASATGTGPATPSAVVAT 247


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 14  NSEWNLSDYCRYKTFLYNTTFLSSL 88
           N+ +N ++Y  YK   YN  ++  +
Sbjct: 93  NNNYNNNNYNNYKKLYYNINYIEQV 117


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 14  NSEWNLSDYCRYKTFLYNTTFLSSL 88
           N  +N ++Y  YK   YN  ++  +
Sbjct: 103 NYNYNNNNYNNYKKLYYNINYIEQI 127


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 110 QRSPCTGIGYSKTLCCTRMFYIYNNHL 30
           Q S  +  G+SK   C R  Y+   H+
Sbjct: 78  QPSVASTTGFSKECYCCRESYLKERHI 104


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 110 QRSPCTGIGYSKTLCCTRMFYIYNNHL 30
           Q S  +  G+SK   C R  Y+   H+
Sbjct: 78  QPSVASTTGFSKECYCCRESYLKERHI 104


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 11  LNSEWNLSDY 40
           +N  WN+SDY
Sbjct: 83  VNMRWNVSDY 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,996
Number of Sequences: 438
Number of extensions: 2349
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)