Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d13
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O10372 Cluster: Occlusion-derived virus envelope protei...   114   2e-24
UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep: ...   108   1e-22
UniRef50_O10370 Cluster: Uncharacterized 55.8 kDa protein; n=13;...    91   3e-17
UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:...    69   8e-11
UniRef50_Q0N488 Cluster: P49; n=15; Nucleopolyhedrovirus|Rep: P4...    65   2e-09
UniRef50_P41701 Cluster: Occlusion-derived virus envelope protei...    57   4e-07
UniRef50_Q0ILA8 Cluster: ORF11; n=2; Nucleopolyhedrovirus|Rep: O...    52   1e-05
UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:...    45   0.002
UniRef50_O10371 Cluster: Occlusion-derived virus envelope protei...    43   0.006
UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5; Nucleopolyh...    43   0.008
UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 - A...    40   0.057
UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentali...    36   0.93 
UniRef50_Q8IKD8 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_Q8IK87 Cluster: Putative uncharacterized protein; n=2; ...    33   8.6  

>UniRef50_O10372 Cluster: Occlusion-derived virus envelope protein
           E27; n=12; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E27 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 297

 Score =  114 bits (274), Expect = 2e-24
 Identities = 53/70 (75%), Positives = 64/70 (91%)
 Frame = +3

Query: 477 MKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLST 656
           MKRV+CNKVRTVTE+  ++ KI+KTY+L EFDLKNLSSLES+E  K+KLALSKYMAM++T
Sbjct: 1   MKRVRCNKVRTVTEVKPNNAKIRKTYDLNEFDLKNLSSLESFENTKVKLALSKYMAMINT 60

Query: 657 LEMTQPLLEI 686
           LEMTQPLLE+
Sbjct: 61  LEMTQPLLEV 70


>UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep:
           Orf13 - Trichoplusia ni SNPV
          Length = 296

 Score =  108 bits (259), Expect = 1e-22
 Identities = 52/73 (71%), Positives = 63/73 (86%), Gaps = 3/73 (4%)
 Frame = +3

Query: 477 MKRVKCN---KVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 647
           MKR KC    KVRTVTEI+NSD+K+QK Y+L EFD+KNL+SLESY+TLKIKL + KYMAM
Sbjct: 1   MKRFKCQSTPKVRTVTEIINSDDKLQKEYDLTEFDVKNLNSLESYDTLKIKLVIVKYMAM 60

Query: 648 LSTLEMTQPLLEI 686
           L+TL++TQPLL I
Sbjct: 61  LNTLQLTQPLLTI 73


>UniRef50_O10370 Cluster: Uncharacterized 55.8 kDa protein; n=13;
           Nucleopolyhedrovirus|Rep: Uncharacterized 55.8 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 484

 Score = 90.6 bits (215), Expect = 3e-17
 Identities = 41/46 (89%), Positives = 44/46 (95%)
 Frame = +3

Query: 3   VKHVFSNTVPAYLLIRGDYESSSELKSLRDLNPWVQNTLLKLLIPD 140
           VKH FSNTVPAYLL+RGDYES+SELKSLRDLNPWVQNTLL+LLI D
Sbjct: 426 VKHTFSNTVPAYLLVRGDYESTSELKSLRDLNPWVQNTLLELLIVD 471


>UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:
           Odv-e27 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 284

 Score = 69.3 bits (162), Expect = 8e-11
 Identities = 33/62 (53%), Positives = 45/62 (72%)
 Frame = +3

Query: 495 NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQP 674
           NKVRTVTEIVN  +K+ K +EL E + KNL+SL SY+    ++ L+KY+AML  LE +Q 
Sbjct: 5   NKVRTVTEIVNGHDKLTKEFELDELNDKNLNSLVSYDNFNTRMVLAKYIAMLHMLETSQS 64

Query: 675 LL 680
           L+
Sbjct: 65  LI 66


>UniRef50_Q0N488 Cluster: P49; n=15; Nucleopolyhedrovirus|Rep: P49 -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 498

 Score = 64.9 bits (151), Expect = 2e-09
 Identities = 33/44 (75%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
 Frame = +3

Query: 6   KHVFSNTVPAYLLIRGDYESSSELKSLRDL-NPWVQNTLLKLLI 134
           +++F NTVPAYLLIRGDYESS   KSL +L N WVQNTLLKLLI
Sbjct: 428 RYIFGNTVPAYLLIRGDYESS--FKSLHELKNSWVQNTLLKLLI 469


>UniRef50_P41701 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Autographa californica
           nuclear polyhedrosis virus (AcMNPV)
          Length = 62

 Score = 57.2 bits (132), Expect = 4e-07
 Identities = 26/30 (86%), Positives = 28/30 (93%), Gaps = 1/30 (3%)
 Frame = +1

Query: 373 PPSATG-FMNPLNATMRANPFMNTPQRQML 459
           PP+A G F+NPLNATMRANPFMNTPQRQML
Sbjct: 33  PPNALGGFVNPLNATMRANPFMNTPQRQML 62


>UniRef50_Q0ILA8 Cluster: ORF11; n=2; Nucleopolyhedrovirus|Rep:
           ORF11 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 470

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +3

Query: 9   HVFSNTVPAYLLIRGDYESSSELKSLRDLNPWVQNTLLKLLI 134
           H F N    YLLIRGDYES S++K L+DL P VQN + +L+I
Sbjct: 421 HKFINGSSVYLLIRGDYESISDIKLLKDLTPLVQNAVFQLVI 462


>UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:
           ODV-E18 - Mamestra configurata NPV-A
          Length = 83

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = +1

Query: 373 PPSATG--FMNPLNATMRANPFMNTPQRQML 459
           PP   G  F+NPLNATMRANPF+N  QR ML
Sbjct: 53  PPGGGGNTFVNPLNATMRANPFVNPAQRNML 83


>UniRef50_O10371 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 85

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 34/99 (34%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
 Frame = +1

Query: 157 MIYXXXXXXXXXXXDVQSANYLNRLTPNMFLTXXXXXXXXXXXXMFVQXXXXXXXXXXXX 336
           MIY           D    NYLNRLTPN FL             +F+Q            
Sbjct: 1   MIYTDPATGATTNTDAAGNNYLNRLTPNTFLIILAVVVIVALIIIFMQSSSNGNNS---- 56

Query: 337 XXXXXXXXXXXTPPSATGFMN-PLNATMRANPFMNTPQR 450
                      + P+A   M  PLN TMRANPF+ TPQR
Sbjct: 57  -----------SSPAAVPQMGFPLNTTMRANPFVATPQR 84


>UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5;
           Nucleopolyhedrovirus|Rep: LdOrf-odv-e18 peptide -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 88

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +1

Query: 376 PSATGFMNPLNATMRANPFMNTPQRQML 459
           P    + NPLNATMRANPF+N  QR ML
Sbjct: 61  PQRYAYTNPLNATMRANPFVNNAQRSML 88


>UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 -
           Agrotis segetum granulosis virus (AsGV) (Agrotis
           segetumgranulovirus)
          Length = 298

 Score = 39.9 bits (89), Expect = 0.057
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = +3

Query: 489 KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEM 665
           K    RTVTEI +++    K Y++++   KN +     E  ++ L LSKY+AM+  L++
Sbjct: 14  KVENYRTVTEITDAENSYSKRYDVSDLVNKNEAYQRQQEKREMYLMLSKYVAMVLDLKL 72


>UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentalis
           granulovirus|Rep: ODV-E27 - Choristoneura occidentalis
           granulovirus
          Length = 284

 Score = 35.9 bits (79), Expect = 0.93
 Identities = 16/50 (32%), Positives = 32/50 (64%)
 Frame = +3

Query: 489 KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKY 638
           K +  RTVTEIV+S+   +K +++ + + KN + L+  +  ++ L ++KY
Sbjct: 10  KVDSYRTVTEIVDSENFYKKEFDVTDLEYKNEAYLQKNKKRQLFLMVAKY 59


>UniRef50_Q8IKD8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 398

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 435 EHASKANVVDKCIKMKRVKCNKV--RTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYET 608
           EH ++   V K ++ K  KCNKV    + E   + +KIQ+  E   +    +  LE  E 
Sbjct: 209 EHINEKENVIKGLEEKIQKCNKVIKDKIEENETNKKKIQQQNEKINYINDKIQDLER-EQ 267

Query: 609 LKIKLALSKYMAMLSTLEMTQPLLE 683
              K  + KY+  + TL+ T  ++E
Sbjct: 268 KNDKEKIKKYIEKIKTLKKTSTIME 292


>UniRef50_Q8IK87 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1526

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
 Frame = +3

Query: 459 VDKCIKMKRVKC--NKVRTVTEIVNSDEKIQKT----YELAEFDLKNLS 587
           V K +K +++K    K++ + EIVN++E + K     Y+L  FDLKN++
Sbjct: 126 VQKILKEQKIKEPEKKIKRIQEIVNNEENLNKKFNQFYDLFCFDLKNIN 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,465,617
Number of Sequences: 1657284
Number of extensions: 9335567
Number of successful extensions: 21862
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21857
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)