Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d11
         (242 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   0.46 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   2.4  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    24   2.4  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    24   3.2  
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    23   5.6  
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    23   5.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    23   5.6  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   7.5  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.9  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 0.46
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 131 VNINHYTETLFHSTSYCFNLLSSQLIKV*C*FDFKK 238
           +N +H+T+  +  + + F +LSS +IK+   F+F +
Sbjct: 604 INESHFTDFFWPYSQFYFCILSSAIIKMYLDFEFNE 639


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 141  LIFTGTVSVDFLEKLEKLRPGALFHFVFHFL 49
            L+     S  FLEK E +RP A+F     FL
Sbjct: 1014 LLNPADTSFRFLEKREDIRPIAMFRLRGEFL 1044


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 42  ARRENETQNETKRLDAASQVFLKSP 116
           AR     + E KRL+AA  + LK P
Sbjct: 98  ARAAAAKEAEAKRLEAAKNIVLKEP 122


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 114 DFLEKLEKLRPGALFHFVFHFLSSRC 37
           +FL+K+E +     +HF+    SS+C
Sbjct: 56  EFLKKVELMPDDVQWHFIGSLQSSKC 81


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -1

Query: 101 NLRSC--VQALCFILCFIFSPRVAT 33
           ++R C  ++ALCF L F+F   VA+
Sbjct: 120 SMRRCQELKALCFFLWFMFGLYVAS 144


>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 125 VPVNINHYTETLFHSTSYCFNLLS 196
           +P+N+  YT T    +  C NLL+
Sbjct: 10  LPLNVRPYTTTWCSQSPSCSNLLA 33


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 131 LGLFQWTF*KNLRSCVQALCFI 66
           L L  W    N+R C + LCFI
Sbjct: 341 LYLLCWGEANNIRFCPECLCFI 362


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 INHYTETLFHSTSYCFNLLSSQLIK 211
           IN+  +  F+S+   F LLSS LI+
Sbjct: 26  INYTCDNKFYSSPSTFALLSSYLIE 50


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 48  RENETQNETKRLDAASQVFLKSPLKQS 128
           R +   NET  L+  S  FL+ P++ S
Sbjct: 597 RSSYQNNETDPLNPTSGSFLRQPMQYS 623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 905,949
Number of Sequences: 5004
Number of extensions: 14305
Number of successful extensions: 36
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)