Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d11
         (242 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600...    27   2.1  
06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478           27   2.8  
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768           25   8.5  
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798           25   8.5  

>10_08_0558 +
           18756797-18756887,18757189-18757262,18759881-18760069,
           18760190-18760309,18760457-18760521,18760684-18760828,
           18761304-18763337,18763904-18764025,18764127-18764309,
           18764635-18764690,18765086-18765141
          Length = 1044

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 51  ENETQNETKRLDAASQVFLKSPLKQSQ 131
           ENE Q ++KRL+A  Q  +++ ++Q Q
Sbjct: 613 ENELQEQSKRLEADIQEVMRAKVEQEQ 639


>06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478
          Length = 393

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 123 VSVDFL----EKLEKLRPGALFHFVFHFLSSRCHQG 28
           V++DFL    + LEKL P A F   FH ++    QG
Sbjct: 81  VAIDFLILEGDNLEKLFPNASFFSSFHRIAGGTRQG 116


>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
          Length = 1004

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  NARRENETQNETKRLDAASQ 98
           NA+ EN +QN  K+L  AS+
Sbjct: 387 NAKTENSSQNIAKKLQTASE 406


>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
          Length = 244

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 33  GGNARRENETQNETKRLDAASQVFLKSPLKQSQ*IST 143
           GG+ARR  + +++ + + A ++V  + PL  S  + T
Sbjct: 110 GGDARRRLDVEHDERAVRAEAEVVGRRPLSSSPLVLT 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,238,277
Number of Sequences: 37544
Number of extensions: 74064
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)