Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28d11
(242 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 28 1.0
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 28 1.0
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 28 1.0
AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical ... 27 1.3
Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical pr... 27 2.3
U97008-1|AAB52310.1| 370|Caenorhabditis elegans Hypothetical pr... 25 7.1
AC006722-3|AAK68421.3| 404|Caenorhabditis elegans Hypothetical ... 25 7.1
AC006645-8|AAF39848.1| 452|Caenorhabditis elegans Hypothetical ... 25 7.1
Z70211-4|CAA94159.1| 825|Caenorhabditis elegans Hypothetical pr... 25 9.4
U12964-12|AAA91216.1| 362|Caenorhabditis elegans Hypothetical p... 25 9.4
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 101 NLRSCVQALCFILCFIFSPRVATKESGKLCYNC 3
+L SCVQAL ++C I P+ SG NC
Sbjct: 119 HLASCVQALDVVVCEIRDPKNEASGSGDKEGNC 151
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 101 NLRSCVQALCFILCFIFSPRVATKESGKLCYNC 3
+L SCVQAL ++C I P+ SG NC
Sbjct: 460 HLASCVQALDVVVCEIRDPKNEASGSGDKEGNC 492
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 101 NLRSCVQALCFILCFIFSPRVATKESGKLCYNC 3
+L SCVQAL ++C I P+ SG NC
Sbjct: 119 HLASCVQALDVVVCEIRDPKNEASGSGDKEGNC 151
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 101 NLRSCVQALCFILCFIFSPRVATKESGKLCYNC 3
+L SCVQAL ++C I P+ SG NC
Sbjct: 460 HLASCVQALDVVVCEIRDPKNEASGSGDKEGNC 492
>AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical
protein H34C03.2 protein.
Length = 900
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -3
Query: 132 TGTVSVDFLEKL--EKLRPGALFHFVFHFLSSRCHQGV 25
T T +V+ E+L +KL+P HFVF + S+ H +
Sbjct: 483 TDTTTVEEAERLMLDKLQPEQQHHFVFFHVPSQYHDDI 520
>Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical
protein Y53C12C.1 protein.
Length = 314
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 30 LGGNARRENETQNETKRLDAASQVFLKSPLKQSQ*ISTIIQR 155
LG NARR + + ++L + +VFL+ P + +++R
Sbjct: 198 LGANARRLSRSTFTNEQLQSLEEVFLRDPYPSPNERADLVKR 239
>U97008-1|AAB52310.1| 370|Caenorhabditis elegans Hypothetical
protein C03G6.10 protein.
Length = 370
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 13 HSLPDSLVATRGEKMKHKMKQSAWT 87
+SLP SL A + K+ H + WT
Sbjct: 164 NSLPSSLKAVQNNKLNHCPTKKIWT 188
>AC006722-3|AAK68421.3| 404|Caenorhabditis elegans Hypothetical
protein Y19D10A.8 protein.
Length = 404
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 143 HYTETLFHSTSYCFNLLSSQLIKV*C 220
HYT T+ T+Y LS L+ + C
Sbjct: 332 HYTLTVMSFTAYASQFLSPTLVSIIC 357
>AC006645-8|AAF39848.1| 452|Caenorhabditis elegans Hypothetical
protein F56A4.10 protein.
Length = 452
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 143 HYTETLFHSTSYCFNLLSSQLIKV*C 220
HYT T+ T+Y LS L+ + C
Sbjct: 380 HYTLTVMSFTAYASQFLSPTLVSIIC 405
>Z70211-4|CAA94159.1| 825|Caenorhabditis elegans Hypothetical
protein K11E4.4 protein.
Length = 825
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 6 IITQFTGLLGGNARRENETQNETKRLDAASQVFLKSPL 119
IIT T +L ++ N+T N+++ A + + K PL
Sbjct: 571 IITPTTTILRRPSKNANDTMNQSQTQGAETPLVAKPPL 608
>U12964-12|AAA91216.1| 362|Caenorhabditis elegans Hypothetical
protein F26F4.1 protein.
Length = 362
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 18 FTGLLGGNARRENETQNETKRLDA 89
F+GLLGG E T + T R A
Sbjct: 297 FSGLLGGQKEEETATSHITSRTPA 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,910,070
Number of Sequences: 27780
Number of extensions: 75978
Number of successful extensions: 222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -