Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d11
         (242 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   1.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   1.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   1.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   1.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   1.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   5.0  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               19   6.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   8.8  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 74  CFILCFIFSPRVATKESGKLCYN 6
           C+  C +    V  K++GK+ YN
Sbjct: 70  CYFNCVLEKFNVMDKKNGKIRYN 92


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 128 PVNINHYTETLFHSTSYCFNLL 193
           P +I+ Y+  +F     CFNL+
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNLM 422


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 128 PVNINHYTETLFHSTSYCFNLL 193
           P +I+ Y+  +F     CFNL+
Sbjct: 401 PSDIDKYSRIVFPVCFVCFNLM 422


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 192 FHLN*LKSNVDL 227
           FHLN LKS +DL
Sbjct: 145 FHLNVLKSFIDL 156


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 128 PVNINHYTETLFHSTSYCFNLL 193
           P +I+ Y+  +F     CFNL+
Sbjct: 339 PSDIDKYSRIVFPVCFVCFNLM 360


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 31  LVATRGEKMKHKMKQSAWTQLLKFF*KVH*NSPSKYQPLYRDFISFNLL 177
           L++   E +  KM+Q     L   F K++ +       LY D + F  +
Sbjct: 237 LLSVLPEHVAVKMRQDLGASLDTQFKKIYMSRHENVSILYADIVGFTAI 285


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 141 LIFTGTVSVDF 109
           L+F GTV+ DF
Sbjct: 8   LLFAGTVAADF 18


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 2    NNYNTVYRTPWWQRE 46
            ++Y+T+ RT W Q++
Sbjct: 1340 SDYSTLERTAWRQQQ 1354


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 104 KNLRSCVQALCFILCF 57
           K+   C   L FI+CF
Sbjct: 123 KSTDKCENGLNFIICF 138


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 4/7 (57%), Positives = 6/7 (85%)
 Frame = +2

Query: 23 RTPWWQR 43
          + PWW+R
Sbjct: 73 KRPWWER 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,241
Number of Sequences: 438
Number of extensions: 966
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)