Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d09
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...   116   2e-28
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.1  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score =  116 bits (278), Expect = 2e-28
 Identities = 57/97 (58%), Positives = 73/97 (75%)
 Frame = +1

Query: 388 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELS 567
           + + FQ E+ ++M LIIN+ Y NKEIFLRELISN SDALDKIR  SLT+   L++  EL 
Sbjct: 11  ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTNPSRLDSGKELY 70

Query: 568 IRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSG 678
           I+I    +   L IID+G+GMT+ADL++NLGTIAKSG
Sbjct: 71  IKIIPNKNDGTLTIIDTGIGMTKADLVHNLGTIAKSG 107


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -2

Query: 535 GQSATSDGSCPTHLNRSRSTRGGRSLYFCRAS 440
           GQ  T +G   +HLN +        LY C AS
Sbjct: 463 GQYVTVNGDVVSHLNITAIHTNDGGLYRCVAS 494


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,033
Number of Sequences: 336
Number of extensions: 2058
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)