Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d09
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   119   3e-28
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   3.3  
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    25   7.7  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  119 bits (287), Expect = 3e-28
 Identities = 56/97 (57%), Positives = 75/97 (77%)
 Frame = +1

Query: 388 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELS 567
           + + F+ E++++M LIIN++Y NKEIFLRELISN SDALDKIR  SL+D   L+A  +L 
Sbjct: 5   ETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLF 64

Query: 568 IRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSG 678
           IRI  + + ++L I D+G+GMT+ DLINNLG IAKSG
Sbjct: 65  IRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSG 101


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 212 PESSRTPSPKSQICFIAGVKNIQRDLDVNYSILNNCRKC*LTQVPSFN 69
           P ++   SP S+   +AG  N+Q  +D+ +   NN +K  +T V + N
Sbjct: 311 PRNTLIFSPNSRYILLAGFGNLQGSIDI-FDAANNMKK--ITTVEAAN 355


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 460 EIF--LRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIK 579
           E+F  + E +SNGS  L +  L   +D  +LE++ ++   IK
Sbjct: 121 EVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQIVAMIK 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,127
Number of Sequences: 5004
Number of extensions: 36347
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)