Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d09
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...   175   2e-44
Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical pr...   122   3e-28
U00036-14|ABC71802.1|  672|Caenorhabditis elegans Hypothetical p...    89   3e-18
U00036-13|ABC71803.1|  479|Caenorhabditis elegans Hypothetical p...    89   3e-18
AF143150-1|AAD37916.1|  222|Caenorhabditis elegans heat shock pr...    89   3e-18
AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    33   0.19 
U29381-3|AAA68758.2|  617|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.      28   7.1  
Z46240-2|CAA86311.1|  213|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score =  175 bits (427), Expect = 2e-44
 Identities = 87/131 (66%), Positives = 105/131 (80%)
 Frame = +1

Query: 286 EGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEI 465
           E +  + +   REE++I  D LSV+Q+KELR +A+ + FQ EVNRMMKLIINSLYRNKEI
Sbjct: 28  EDAPKETKEETREEDSIKLDGLSVSQIKELRSKAEKHEFQAEVNRMMKLIINSLYRNKEI 87

Query: 466 FLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEPDKRLLHIIDSGVGMTRADL 645
           FLRELISN SDALDKIRL+SLTD   L    E+S++IKA+ + RLLHI D+GVGMTR DL
Sbjct: 88  FLRELISNASDALDKIRLLSLTDPEQLRETEEMSVKIKADRENRLLHITDTGVGMTRQDL 147

Query: 646 INNLGTIAKSG 678
           INNLGTIA+SG
Sbjct: 148 INNLGTIARSG 158


>Z75530-3|CAA99793.1|  702|Caenorhabditis elegans Hypothetical
           protein C47E8.5 protein.
          Length = 702

 Score =  122 bits (293), Expect = 3e-28
 Identities = 56/102 (54%), Positives = 77/102 (75%)
 Frame = +1

Query: 373 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 552
           + + A+ + FQ E+ ++M LIIN+ Y NKEI+LRELISN SDALDKIR  +LT+   L+ 
Sbjct: 1   MSENAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDT 60

Query: 553 NPELSIRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSG 678
             EL I+I    +++ L I+D+G+GMT+ADL+NNLGTIAKSG
Sbjct: 61  GKELFIKITPNKEEKTLTIMDTGIGMTKADLVNNLGTIAKSG 102


>U00036-14|ABC71802.1|  672|Caenorhabditis elegans Hypothetical
           protein R151.7a protein.
          Length = 672

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 47/106 (44%), Positives = 63/106 (59%)
 Frame = +1

Query: 361 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 540
           Q + +    Q + FQ E   +M ++  SLY + E+F+RELISN SDAL+K R   L  +G
Sbjct: 34  QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91

Query: 541 VLEANPELSIRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSG 678
            +   P   IRI    DKR +   D+G+GM R DL+  LGTIAKSG
Sbjct: 92  DVAEGPS-EIRITTNKDKRTITFEDTGIGMNREDLVKFLGTIAKSG 136


>U00036-13|ABC71803.1|  479|Caenorhabditis elegans Hypothetical
           protein R151.7b protein.
          Length = 479

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 47/106 (44%), Positives = 63/106 (59%)
 Frame = +1

Query: 361 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 540
           Q + +    Q + FQ E   +M ++  SLY + E+F+RELISN SDAL+K R   L  +G
Sbjct: 34  QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91

Query: 541 VLEANPELSIRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSG 678
            +   P   IRI    DKR +   D+G+GM R DL+  LGTIAKSG
Sbjct: 92  DVAEGPS-EIRITTNKDKRTITFEDTGIGMNREDLVKFLGTIAKSG 136


>AF143150-1|AAD37916.1|  222|Caenorhabditis elegans heat shock
           protein 75 protein.
          Length = 222

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 47/106 (44%), Positives = 63/106 (59%)
 Frame = +1

Query: 361 QMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRG 540
           Q + +    Q + FQ E   +M ++  SLY + E+F+RELISN SDAL+K R   L  +G
Sbjct: 34  QRRWMASEPQRHEFQAETRNLMDIVAKSLYSHSEVFVRELISNASDALEKRRYAEL--KG 91

Query: 541 VLEANPELSIRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSG 678
            +   P   IRI    DKR +   D+G+GM R DL+  LGTIAKSG
Sbjct: 92  DVAEGPS-EIRITTNKDKRTITFEDTGIGMNREDLVKFLGTIAKSG 136


>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
 Frame = +1

Query: 274 GSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYR 453
           G    G   D ++V  EEE I  D L   + + +RD   +     E+ R  K  + S + 
Sbjct: 122 GRRGRGDAADDDSVPMEEEDIPVDILENIRGRTIRDHVSDEAVAKEIERRFKNFLRSFHE 181

Query: 454 --NKEI-FLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEPDKRLLHIID 615
             NK+  +++ + S  +D  + +  +S TD         +S  +   P++ +L I+D
Sbjct: 182 PGNKQTKYIQMIKSMAADNRESLE-VSFTDLSDDNGEQNISYFLPEAPNE-MLAIMD 236


>U29381-3|AAA68758.2|  617|Caenorhabditis elegans Hypothetical
           protein F35D11.3 protein.
          Length = 617

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 325 EEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKL 432
           E   SPD   V Q + LR   + YT + E N +M+L
Sbjct: 316 ESDTSPDQAFVHQWRHLRHTKEQYTLRYESNYLMEL 351


>Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical
           protein C04F12.3 protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 669 GDGAEVVDEVGARHADAGVDDVQQPLVGLGLDADAE 562
           G G  + DE G       V +V  P++GL LD  A+
Sbjct: 340 GSGTNIEDESGETALSLAVKNVNYPVIGLLLDNGAD 375


>AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.
          Length = 597

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 669 GDGAEVVDEVGARHADAGVDDVQQPLVGLGLDADAE 562
           G G  + DE G       V +V  P++GL LD  A+
Sbjct: 340 GSGTNIEDESGETALSLAVKNVNYPVIGLLLDNGAD 375


>Z46240-2|CAA86311.1|  213|Caenorhabditis elegans Hypothetical
           protein B0272.2 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 427 KLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGV 543
           +L++N   ++    L +LIS GS  L+ ++   L  RGV
Sbjct: 123 ELLLNDRLQSSHTHLDDLISQGSAVLENLKSQHLNLRGV 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,846,034
Number of Sequences: 27780
Number of extensions: 208165
Number of successful extensions: 624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)