Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28d07
(703 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY051764-1|AAK93188.1| 407|Drosophila melanogaster LD29280p pro... 189 3e-48
AE014297-3086|AAN13899.1| 407|Drosophila melanogaster CG6343-PB... 189 3e-48
AE014297-3085|AAF55947.1| 407|Drosophila melanogaster CG6343-PA... 189 3e-48
Y10911-1|CAA71852.1| 161|Drosophila melanogaster NADH-ubiquinon... 180 2e-45
AE014297-3352|AAF56159.2| 350|Drosophila melanogaster CG16710-P... 31 1.1
AY071287-1|AAL48909.1| 533|Drosophila melanogaster RE31310p pro... 30 2.6
AE014296-63|AAN11432.1| 533|Drosophila melanogaster CG32476-PA ... 30 2.6
AY071681-1|AAL49303.2| 128|Drosophila melanogaster RH08487p pro... 29 6.1
AY061095-1|AAL28643.1| 456|Drosophila melanogaster LD08555p pro... 29 6.1
AE014297-1128|AAF54514.1| 456|Drosophila melanogaster CG4003-PA... 29 6.1
U15967-1|AAB60241.1| 331|Drosophila melanogaster rfc40 protein. 29 8.1
AY113316-1|AAM29321.1| 384|Drosophila melanogaster AT28104p pro... 29 8.1
AY094829-1|AAM11182.1| 331|Drosophila melanogaster LD40483p pro... 29 8.1
AF273708-1|AAL35411.1| 118|Drosophila melanogaster PFTAIRE-inte... 29 8.1
AE014297-475|AAF54113.3| 118|Drosophila melanogaster CG31483-PA... 29 8.1
AE014296-772|AAF47843.1| 331|Drosophila melanogaster CG14999-PA... 29 8.1
AE014134-2522|AAF53410.1| 384|Drosophila melanogaster CG4701-PA... 29 8.1
>AY051764-1|AAK93188.1| 407|Drosophila melanogaster LD29280p
protein.
Length = 407
Score = 189 bits (461), Expect = 3e-48
Identities = 91/183 (49%), Positives = 122/183 (66%)
Frame = +3
Query: 153 TKIAACTFVQNRNISGRAMREALXXXXXXXXXFDYVNKDYTWLRSLIDRTTHRFDDNSKV 332
T F Q +ISG+ MR + Y K Y+ ++ D+T+ RFD+NSKV
Sbjct: 27 TNALPAAFQQRCSISGKTMRGG--PRVPKAAPYPYKTKKYSVFNAIFDKTSKRFDENSKV 84
Query: 333 IIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFDDQVPEDTRTFDH 512
I VEGP+AAGK+ FA LA++L M+++P ++DL YI G D+R D Q+P R++D
Sbjct: 85 ICVEGPIAAGKSKFAKELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDV 144
Query: 513 VNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTGQGIVLERSPYSDFVFLEAMYSQ 692
NF +P+H LAA FQI MY+ RYSQYIDAL H+ +TGQG+VLERSPYSDFVF+EAM+ Q
Sbjct: 145 RNFCLDPSHDLAAQFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEAMFRQ 204
Query: 693 KFL 701
+L
Sbjct: 205 GYL 207
>AE014297-3086|AAN13899.1| 407|Drosophila melanogaster CG6343-PB,
isoform B protein.
Length = 407
Score = 189 bits (461), Expect = 3e-48
Identities = 91/183 (49%), Positives = 122/183 (66%)
Frame = +3
Query: 153 TKIAACTFVQNRNISGRAMREALXXXXXXXXXFDYVNKDYTWLRSLIDRTTHRFDDNSKV 332
T F Q +ISG+ MR + Y K Y+ ++ D+T+ RFD+NSKV
Sbjct: 27 TNALPAAFQQRCSISGKTMRGG--PRVPKAAPYPYKTKKYSVFNAIFDKTSKRFDENSKV 84
Query: 333 IIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFDDQVPEDTRTFDH 512
I VEGP+AAGK+ FA LA++L M+++P ++DL YI G D+R D Q+P R++D
Sbjct: 85 ICVEGPIAAGKSKFAKELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDV 144
Query: 513 VNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTGQGIVLERSPYSDFVFLEAMYSQ 692
NF +P+H LAA FQI MY+ RYSQYIDAL H+ +TGQG+VLERSPYSDFVF+EAM+ Q
Sbjct: 145 RNFCLDPSHDLAAQFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEAMFRQ 204
Query: 693 KFL 701
+L
Sbjct: 205 GYL 207
>AE014297-3085|AAF55947.1| 407|Drosophila melanogaster CG6343-PA,
isoform A protein.
Length = 407
Score = 189 bits (461), Expect = 3e-48
Identities = 91/183 (49%), Positives = 122/183 (66%)
Frame = +3
Query: 153 TKIAACTFVQNRNISGRAMREALXXXXXXXXXFDYVNKDYTWLRSLIDRTTHRFDDNSKV 332
T F Q +ISG+ MR + Y K Y+ ++ D+T+ RFD+NSKV
Sbjct: 27 TNALPAAFQQRCSISGKTMRGG--PRVPKAAPYPYKTKKYSVFNAIFDKTSKRFDENSKV 84
Query: 333 IIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFDDQVPEDTRTFDH 512
I VEGP+AAGK+ FA LA++L M+++P ++DL YI G D+R D Q+P R++D
Sbjct: 85 ICVEGPIAAGKSKFAKELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDV 144
Query: 513 VNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTGQGIVLERSPYSDFVFLEAMYSQ 692
NF +P+H LAA FQI MY+ RYSQYIDAL H+ +TGQG+VLERSPYSDFVF+EAM+ Q
Sbjct: 145 RNFCLDPSHDLAAQFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEAMFRQ 204
Query: 693 KFL 701
+L
Sbjct: 205 GYL 207
>Y10911-1|CAA71852.1| 161|Drosophila melanogaster NADH-ubiquinone
oxidoreductase42 kDa subunit protein.
Length = 161
Score = 180 bits (438), Expect = 2e-45
Identities = 82/148 (55%), Positives = 109/148 (73%)
Frame = +3
Query: 249 FDYVNKDYTWLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANM 428
+ Y K Y+ ++ D+T+ RFD+NSKVI VEGP+AAGK+ FA LA++L M+++P ++
Sbjct: 13 YPYKTKKYSVFNAIFDKTSKRFDENSKVICVEGPIAAGKSKFAKELAEELDMEYYPAVDL 72
Query: 429 DLHYIRPNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALA 608
DL YI G D+R D Q+P R++D NF +P+H LAA FQI MY+ RYSQYIDAL
Sbjct: 73 DLIYINSYGYDMRKLDPQLPPSCRSYDVRNFCLDPSHDLAAQFQIRMYMLRYSQYIDALQ 132
Query: 609 HLFNTGQGIVLERSPYSDFVFLEAMYSQ 692
+ +TGQG+VLERSPYSDFVFLEAM+ Q
Sbjct: 133 RVLSTGQGVVLERSPYSDFVFLEAMFRQ 160
>AE014297-3352|AAF56159.2| 350|Drosophila melanogaster CG16710-PA
protein.
Length = 350
Score = 31.5 bits (68), Expect = 1.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 536 PSLGCKLPNNDVCGPVQSVY*CFG 607
P++G LPN +CGP+ Y FG
Sbjct: 85 PNMGHILPNTQICGPIMPAYRIFG 108
>AY071287-1|AAL48909.1| 533|Drosophila melanogaster RE31310p
protein.
Length = 533
Score = 30.3 bits (65), Expect = 2.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 185 ILYKRTCCYFCTLSWADNFNYSC 117
+ YK CC C+ SWA FN++C
Sbjct: 332 VWYKLPCCIQCSKSWA-TFNFAC 353
>AE014296-63|AAN11432.1| 533|Drosophila melanogaster CG32476-PA
protein.
Length = 533
Score = 30.3 bits (65), Expect = 2.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 185 ILYKRTCCYFCTLSWADNFNYSC 117
+ YK CC C+ SWA FN++C
Sbjct: 332 VWYKLPCCIQCSKSWA-TFNFAC 353
>AY071681-1|AAL49303.2| 128|Drosophila melanogaster RH08487p
protein.
Length = 128
Score = 29.1 bits (62), Expect = 6.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 426 C*LRGNASYPSHRLGRLQRRSYQQLPALPRLSLCCYHQTCGS 301
C + + S+PS +L L R Y L AL L++CC CG+
Sbjct: 10 CSVLSSCSWPSFQLLGLMAR-YTYLVALVLLAICCQWGYCGA 50
>AY061095-1|AAL28643.1| 456|Drosophila melanogaster LD08555p
protein.
Length = 456
Score = 29.1 bits (62), Expect = 6.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 327 KVIIVEGPVAAGKTAFAASLADDLGMK 407
+ +++ GP GKTA A ++A +LG K
Sbjct: 64 RALLLAGPPGTGKTAIALAIAQELGNK 90
>AE014297-1128|AAF54514.1| 456|Drosophila melanogaster CG4003-PA
protein.
Length = 456
Score = 29.1 bits (62), Expect = 6.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 327 KVIIVEGPVAAGKTAFAASLADDLGMK 407
+ +++ GP GKTA A ++A +LG K
Sbjct: 64 RALLLAGPPGTGKTAIALAIAQELGNK 90
>U15967-1|AAB60241.1| 331|Drosophila melanogaster rfc40 protein.
Length = 331
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 321 NSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDL 464
N+ II+ GP GKT LA L + EA ++L+ G+D+
Sbjct: 48 NAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDV 95
>AY113316-1|AAM29321.1| 384|Drosophila melanogaster AT28104p
protein.
Length = 384
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 327 KVIIVEGPVAAGKTAFAASLADDLGMK 407
K +++ GP GKT A ++A D GM+
Sbjct: 131 KGVLLHGPPGCGKTLIAKAIAKDAGMR 157
>AY094829-1|AAM11182.1| 331|Drosophila melanogaster LD40483p
protein.
Length = 331
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 321 NSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDL 464
N+ II+ GP GKT LA L + EA ++L+ G+D+
Sbjct: 48 NAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDV 95
>AF273708-1|AAL35411.1| 118|Drosophila melanogaster
PFTAIRE-interacting factor 2 protein.
Length = 118
Score = 28.7 bits (61), Expect = 8.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 324 CYHQTCGSCGRLSCATKCSPC 262
C + CGSC C CSPC
Sbjct: 25 CCNDCCGSCCSPCCGPCCSPC 45
>AE014297-475|AAF54113.3| 118|Drosophila melanogaster CG31483-PA
protein.
Length = 118
Score = 28.7 bits (61), Expect = 8.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 324 CYHQTCGSCGRLSCATKCSPC 262
C + CGSC C CSPC
Sbjct: 25 CCNDCCGSCCSPCCGPCCSPC 45
>AE014296-772|AAF47843.1| 331|Drosophila melanogaster CG14999-PA
protein.
Length = 331
Score = 28.7 bits (61), Expect = 8.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 321 NSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDL 464
N+ II+ GP GKT LA L + EA ++L+ G+D+
Sbjct: 48 NAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDV 95
>AE014134-2522|AAF53410.1| 384|Drosophila melanogaster CG4701-PA
protein.
Length = 384
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 327 KVIIVEGPVAAGKTAFAASLADDLGMK 407
K +++ GP GKT A ++A D GM+
Sbjct: 131 KGVLLHGPPGCGKTLIAKAIAKDAGMR 157
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,882,665
Number of Sequences: 53049
Number of extensions: 649175
Number of successful extensions: 1870
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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