Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d07
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical pr...   134   6e-32
U21320-4|AAM54175.1|  188|Caenorhabditis elegans Hypothetical pr...    69   3e-12
Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical pr...    33   0.26 
Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine rece...    31   1.1  
Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF039719-2|AAB96757.1|  827|Caenorhabditis elegans Blistered cut...    29   2.4  
AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered cut...    29   2.4  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z79639-3|CAB01918.1|  385|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    27   9.8  
AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    27   9.8  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    27   9.8  

>U21320-3|AAA62532.1|  436|Caenorhabditis elegans Hypothetical
           protein K04G7.4a protein.
          Length = 436

 Score =  134 bits (324), Expect = 6e-32
 Identities = 65/151 (43%), Positives = 94/151 (62%)
 Frame = +3

Query: 249 FDYVNKDYTWLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANM 428
           +DY +  + ++  L D T   F  NSK+I+VEG + +GKT  A  LAD LG  HFPE  M
Sbjct: 47  WDYKHNGFNYIDGLKDDTRSHFHQNSKLIVVEGNIGSGKTTLAKQLADQLGFVHFPEFRM 106

Query: 429 DLHYIRPNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALA 608
           D   +   G DLR++ ++ P   R  D   F +NP+  L+A  Q  ++  R+ QY++ALA
Sbjct: 107 DDILVDRYGNDLRNYYNKFPARYRLPDISMFYKNPSGELSAAMQDRIFNCRFDQYLNALA 166

Query: 609 HLFNTGQGIVLERSPYSDFVFLEAMYSQKFL 701
           H+ NTGQG+VLER+P+SDFVF  AM  + ++
Sbjct: 167 HILNTGQGVVLERTPHSDFVFANAMRDKNYI 197


>U21320-4|AAM54175.1|  188|Caenorhabditis elegans Hypothetical
           protein K04G7.4b protein.
          Length = 188

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 34/86 (39%), Positives = 50/86 (58%)
 Frame = +3

Query: 249 FDYVNKDYTWLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANM 428
           +DY +  + ++  L D T   F  NSK+I+VEG + +GKT  A  LAD LG  HFPE  M
Sbjct: 47  WDYKHNGFNYIDGLKDDTRSHFHQNSKLIVVEGNIGSGKTTLAKQLADQLGFVHFPEFRM 106

Query: 429 DLHYIRPNGVDLRSFDDQVPEDTRTF 506
           D   +   G DLR++ +++    +TF
Sbjct: 107 DDILVDRYGNDLRNYYNKLVTVFQTF 132


>Z75952-5|CAB00093.2|  149|Caenorhabditis elegans Hypothetical
           protein F29D10.2 protein.
          Length = 149

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 342 PRLSLCCYHQTCGSCGRLSCATKCSPC 262
           PR   CC  + C +C R  C T+C  C
Sbjct: 71  PRCCCCCRPKCCCTCCRTCCCTRCCTC 97


>Z49886-6|CAI79131.1|  149|Caenorhabditis elegans Hypothetical
           protein C06A1.7 protein.
          Length = 149

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 342 PRLSLCCYHQTCGSCGRLSCATKCSPC 262
           PR   CC  + C +C R  C T+C  C
Sbjct: 73  PRCCCCCRPKCCCTCCRTCCCTRCCTC 99


>Z49886-5|CAA90055.1|  152|Caenorhabditis elegans Hypothetical
           protein C06A1.6 protein.
          Length = 152

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 342 PRLSLCCYHQTCGSCGRLSCATKCSPC 262
           PR   CC  + C +C R  C T+C  C
Sbjct: 76  PRCCCCCRPKCCCTCCRTCCCTRCCTC 102


>U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein35 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
 Frame = -3

Query: 554 VCSQAMVRILIEINMVKGPSVLGYLVVEGPQV-DAVRTNIVQIHVSFGEMLHTQVIG*GG 378
           V SQA   I + +N V+ P ++   VV G  + + V    V I++SF +M+  + +   G
Sbjct: 251 VASQAAAIIYVVMNFVQVPPIV---VVSGHLLWELVHGAPVFIYISFNDMIRKRFLEIFG 307

Query: 377 CKGGLTSSY---RPF---HDYHFAV 321
           CK  +T  +    P    HDY F +
Sbjct: 308 CKNVVTPQFVVSPPVVVQHDYTFMI 332


>Z81042-2|CAB02793.1|  458|Caenorhabditis elegans Hypothetical
           protein C27H6.2 protein.
          Length = 458

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 327 KVIIVEGPVAAGKTAFAASLADDLG 401
           + +++ GP A GKTA A +++ +LG
Sbjct: 83  RAVLIAGPPATGKTAIALAMSQELG 107


>AF039719-2|AAB96757.1|  827|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformc protein.
          Length = 827

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = -2

Query: 441 YSANPC*LRGNASYPSHRLGRLQRRSYQQLPALPRLSLCCYHQTC-GSCGRLSCATKCSP 265
           YSA P   +G  S       +++  +    P L     C  H  C G C   S AT C  
Sbjct: 637 YSATPATSQGVLSRVHQLTSQVEESAPISFPDLTSAGNC--HDECNGGCTESSSATSCFA 694

Query: 264 CSH 256
           C H
Sbjct: 695 CKH 697


>AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformd protein.
          Length = 942

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = -2

Query: 441 YSANPC*LRGNASYPSHRLGRLQRRSYQQLPALPRLSLCCYHQTC-GSCGRLSCATKCSP 265
           YSA P   +G  S       +++  +    P L     C  H  C G C   S AT C  
Sbjct: 637 YSATPATSQGVLSRVHQLTSQVEESAPISFPDLTSAGNC--HDECNGGCTESSSATSCFA 694

Query: 264 CSH 256
           C H
Sbjct: 695 CKH 697


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 342 PRLSLCCYHQTCGSCGRLSCATKCSPC 262
           PR   CC  + C +C R  C T+C  C
Sbjct: 91  PRCCCCC--RRCCTCCRTCCCTRCCTC 115


>Z79639-3|CAB01918.1|  385|Caenorhabditis elegans Hypothetical
           protein F54E4.4 protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
 Frame = -2

Query: 333 SLCCYHQTCGSCGR------LSCATKCSPC 262
           SLCC+  T G C R      L+CA  C  C
Sbjct: 260 SLCCFWATTGECSRNPFWMKLNCAKTCGTC 289


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 342 PRLSLCCYHQTCGSCGRLSCATKCSPC 262
           PR   CC  + C +C R  C T+C  C
Sbjct: 89  PRCCCCC--RRCCTCCRTCCCTRCCTC 113


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 339 RLSLCCYHQTCGSCGRLSCATKCSPC 262
           R   CC  + C +C R  C T+C  C
Sbjct: 89  RPKCCCCCRRCCTCCRTCCCTRCCTC 114


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 342 PRLSLCCYHQTCGSCGRLSCATKCSPC 262
           PR   CC  + C +C R  C T+C  C
Sbjct: 90  PRCCCCC--RRCCTCCRTCCCTRCCTC 114


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 342 PRLSLCCYHQTCGSCGRLSCATKCSPC 262
           PR   CC  + C +C R  C T+C  C
Sbjct: 91  PRCCCCC--RRCCTCCRTCCCTRCCTC 115


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
           trithorax-related protein LIN-59 protein.
          Length = 1312

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 348 PVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFDDQVPED 494
           P+++   A  +S   D G++  P +     Y   N VD+   DD+  +D
Sbjct: 160 PMSSNAPATTSSATPDSGIQSVPTSPPSPSYAMMNDVDIGDHDDEEDDD 208


>AF043693-4|AAB97538.1|  971|Caenorhabditis elegans Hypothetical
           protein C34B2.6 protein.
          Length = 971

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 327 KVIIVEGPVAAGKTAFAASLADDLGMKHF 413
           K++   GP   GKT+ A S+A  L  ++F
Sbjct: 506 KILCFHGPPGVGKTSIAKSIATALNREYF 534


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
           lineage protein 59 protein.
          Length = 1312

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 348 PVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFDDQVPED 494
           P+++   A  +S   D G++  P +     Y   N VD+   DD+  +D
Sbjct: 160 PMSSNAPATTSSATPDSGIQSVPTSPPSPSYAMMNDVDIGDHDDEEDDD 208


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = -1

Query: 544  KRWLGF*LKLTWSKVLVSSGTWSSKDLKSTPFG-----RI*CKSMLASGKCFIPK 395
            + W    +KLT    +VSS  W  +D +S  F      ++ C+ M  + K F  K
Sbjct: 1292 EEWCRLAVKLTDRNTIVSSDNWQRRDRQSADFDTNKYLKLVCRDMFNAYKQFFEK 1346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,491
Number of Sequences: 27780
Number of extensions: 329883
Number of successful extensions: 901
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)