Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d03
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr...    34   0.099
Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical p...    31   0.92 
Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical p...    31   0.92 
Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z73972-7|CAA98262.2|  305|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AY390544-1|AAQ94956.1|  160|Caenorhabditis elegans SMA-9 class I...    27   8.6  
AY390543-1|AAQ94955.1|  251|Caenorhabditis elegans SMA-9 class I...    27   8.6  
AY390542-1|AAQ94954.1|  468|Caenorhabditis elegans SMA-9 class I...    27   8.6  
AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of...    27   8.6  

>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
            F21H12.6 protein.
          Length = 1374

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 123  INYEATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFFDEQQVWKGDADSKRATI---N 293
            IN ++  YE L    EQ+D  VS  +   D       F+ +  VW    D+K A I   +
Sbjct: 1249 INKKSEGYEALKSKSEQIDATVSEELKKLDSNWTGNQFYVKLLVWLSADDTKTALISAKH 1308

Query: 294  VIVSGQFNMRVKLCNEDG 347
                GQF    KL N+ G
Sbjct: 1309 AAALGQFGRCAKLLNKAG 1326


>Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical
           protein F32D8.12b protein.
          Length = 460

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 556 VSYPSAVAME*TTPSKQYPEVLKLCNDRA 642
           ++ P AV +E  T  +Q  E+LKLCNDRA
Sbjct: 48  IAPPPAVVLE-PTNVEQVSEILKLCNDRA 75


>Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical
           protein F32D8.12a protein.
          Length = 474

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 556 VSYPSAVAME*TTPSKQYPEVLKLCNDRA 642
           ++ P AV +E  T  +Q  E+LKLCNDRA
Sbjct: 48  IAPPPAVVLE-PTNVEQVSEILKLCNDRA 75


>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = -1

Query: 389 GVCDFDQHGIA-YGTAVLIAKFDTHVKLPAHNNINGSPFTVGVAFPYLLLVKEHVRYVAN 213
           G  D  QHG +  G  +    F T   LP H +      TVG + PY L   +   Y  N
Sbjct: 190 GFTDHKQHGSSSVGVDISFVNFKTAYGLPEHADAFALRNTVGNSDPYRLYNLDVFEYELN 249

Query: 212 ------VAVPYV 195
                 V++PY+
Sbjct: 250 NPMALYVSIPYI 261


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = -1

Query: 389 GVCDFDQHGIA-YGTAVLIAKFDTHVKLPAHNNINGSPFTVGVAFPYLLLVKEHVRYVAN 213
           G  D  QHG +  G  +    F T   LP H +      TVG + PY L   +   Y  N
Sbjct: 204 GFTDHKQHGSSSVGVDISFVNFKTAYGLPEHADAFALRNTVGNSDPYRLYNLDVFEYELN 263

Query: 212 ------VAVPYV 195
                 V++PY+
Sbjct: 264 NPMALYVSIPYI 275


>U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical
           protein T28D9.4 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 132 EATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFF 239
           + T Y+N IKL +  +VH++++ W   I +I  + +
Sbjct: 113 DRTKYKNEIKLLKTFNVHLTYSTWINSILEILALIY 148


>Z73972-7|CAA98262.2|  305|Caenorhabditis elegans Hypothetical
           protein F15H10.5 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/56 (25%), Positives = 35/56 (62%)
 Frame = +3

Query: 144 YENLIKLKEQVDVHVSWNVWNGDIGDIAYVFFDEQQVWKGDADSKRATINVIVSGQ 311
           +E+++K+   V+V    ++W+G  G +   FF+ +++ +   D+ R +I +++SG+
Sbjct: 102 FEHVMKVMSFVEV--IHDLWSG--GKLVMQFFELEEMKEALEDTFRTSIQLLISGE 153


>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
            protein T05A10.1g protein.
          Length = 1888

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 507  FPVDKVPLPNLSHLLYGFIPICGGDGINDALKTIP 611
            FPV  V  P+L  L Y     CG  G+++    IP
Sbjct: 1809 FPVGVVSTPSLQQLHYVAQSNCGSTGVSNTKSVIP 1843


>Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical
           protein C27B7.1a protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 414 EYTWLENNKPGRREDKIVAAYFVEWGVY 497
           E  W EN KP   ED   A  F+EW  Y
Sbjct: 155 EIEWKENKKPPFPEDGDSAHTFLEWLTY 182


>U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical
           protein M02F4.7 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 168 EQVDVHVSWNVWNGDIGDIAYVFFDE 245
           EQV +H +W+ W   + D  Y+  D+
Sbjct: 76  EQVQLHANWHTWLEYVADGTYIVGDD 101


>AY390544-1|AAQ94956.1|  160|Caenorhabditis elegans SMA-9 class IIa
           protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 507 FPVDKVPLPNLSHLLYGFIPICGGDGINDALKTIP 611
           FPV  V  P+L  L Y     CG  G+++    IP
Sbjct: 81  FPVGVVSTPSLQQLHYVAQSNCGSTGVSNTKSVIP 115


>AY390543-1|AAQ94955.1|  251|Caenorhabditis elegans SMA-9 class IIa
           protein.
          Length = 251

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 507 FPVDKVPLPNLSHLLYGFIPICGGDGINDALKTIP 611
           FPV  V  P+L  L Y     CG  G+++    IP
Sbjct: 172 FPVGVVSTPSLQQLHYVAQSNCGSTGVSNTKSVIP 206


>AY390542-1|AAQ94954.1|  468|Caenorhabditis elegans SMA-9 class IIa
           protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 507 FPVDKVPLPNLSHLLYGFIPICGGDGINDALKTIP 611
           FPV  V  P+L  L Y     CG  G+++    IP
Sbjct: 389 FPVGVVSTPSLQQLHYVAQSNCGSTGVSNTKSVIP 423


>AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of
           presenilin 2 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 414 EYTWLENNKPGRREDKIVAAYFVEWGVY 497
           E  W EN KP   ED   A  F+EW  Y
Sbjct: 155 EIEWKENKKPPFPEDGDSAHTFLEWLTY 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,539,321
Number of Sequences: 27780
Number of extensions: 338805
Number of successful extensions: 963
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)