Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28d01
(658 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX... 287 1e-76
UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 varia... 285 6e-76
UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n... 244 1e-63
UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;... 235 7e-61
UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;... 225 1e-57
UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Re... 220 3e-56
UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6; ... 215 6e-55
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 206 4e-52
UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma ... 202 4e-51
UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX... 192 6e-48
UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2; ... 189 6e-47
UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1; ... 189 6e-47
UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5; T... 183 4e-45
UniRef50_A7AWS5 Cluster: DEAD/DEAH box helicase and helicase con... 180 2e-44
UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5; Ent... 167 2e-40
UniRef50_Q4N5F8 Cluster: ATP-dependent RNA helicase, putative; n... 166 5e-40
UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;... 166 5e-40
UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase Dbp... 165 6e-40
UniRef50_Q7R0K7 Cluster: GLP_154_39979_41331; n=1; Giardia lambl... 164 1e-39
UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4; ... 164 2e-39
UniRef50_Q01EH4 Cluster: Ddx49 Ddx49-related DEAD box helicase s... 161 1e-38
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 160 2e-38
UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;... 157 2e-37
UniRef50_Q4PEX7 Cluster: ATP-dependent RNA helicase DBP8; n=1; U... 157 2e-37
UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia A... 157 3e-37
UniRef50_A4S6M9 Cluster: Predicted protein; n=3; Ostreococcus|Re... 156 5e-37
UniRef50_P38719 Cluster: ATP-dependent RNA helicase DBP8; n=14; ... 155 9e-37
UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein; ... 154 2e-36
UniRef50_A2EQ41 Cluster: DEAD/DEAH box helicase family protein; ... 152 6e-36
UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1; ... 152 8e-36
UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2; F... 151 1e-35
UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 150 3e-35
UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13; ... 149 4e-35
UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;... 148 1e-34
UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;... 144 1e-33
UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX... 144 2e-33
UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2; ... 144 2e-33
UniRef50_Q9AW05 Cluster: DEAD box protein; n=1; Guillardia theta... 143 4e-33
UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1; ... 143 4e-33
UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 142 5e-33
UniRef50_Q5C221 Cluster: SJCHGC04124 protein; n=1; Schistosoma j... 142 7e-33
UniRef50_Q389T9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 142 7e-33
UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14; ... 142 9e-33
UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA hel... 141 2e-32
UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Re... 140 2e-32
UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|R... 140 3e-32
UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=... 140 4e-32
UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein; ... 139 5e-32
UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 138 8e-32
UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellu... 138 1e-31
UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subuni... 137 2e-31
UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12; Alpha... 137 2e-31
UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, wh... 137 2e-31
UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1; ... 137 2e-31
UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=... 136 3e-31
UniRef50_Q5CKB1 Cluster: ATP-dependent RNA helicase; n=2; Crypto... 136 3e-31
UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4; Ascomy... 136 3e-31
UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2; C... 136 3e-31
UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6; H... 136 6e-31
UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 135 8e-31
UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1; S... 135 8e-31
UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein; ... 135 1e-30
UniRef50_Q8D563 Cluster: Superfamily II DNA and RNA helicase; n=... 134 1e-30
UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box heli... 134 1e-30
UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=... 134 1e-30
UniRef50_UPI00015B6038 Cluster: PREDICTED: similar to DEAD box A... 134 2e-30
UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1; Syntro... 134 2e-30
UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146, w... 134 2e-30
UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;... 134 2e-30
UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1; Planct... 133 3e-30
UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein; ... 133 3e-30
UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59; ... 133 4e-30
UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box RN... 133 4e-30
UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 133 4e-30
UniRef50_Q7JQN4 Cluster: LD15481p; n=7; Endopterygota|Rep: LD154... 133 4e-30
UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n... 133 4e-30
UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 132 5e-30
UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellu... 132 5e-30
UniRef50_Q24I45 Cluster: DEAD/DEAH box helicase family protein; ... 132 5e-30
UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydb... 132 5e-30
UniRef50_Q9Y7T7 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 132 5e-30
UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine... 132 7e-30
UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1; F... 132 7e-30
UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 132 9e-30
UniRef50_Q1JTF7 Cluster: ATP-dependent RNA helicase, putative; n... 132 9e-30
UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=... 131 1e-29
UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1; Thiom... 131 1e-29
UniRef50_Q21EB3 Cluster: DEAD/DEAH box helicase-like protein; n=... 131 1e-29
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 131 2e-29
UniRef50_UPI0000499ECF Cluster: DEAD/DEAH box helicase; n=1; Ent... 130 2e-29
UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DE... 130 2e-29
UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein; ... 130 3e-29
UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein; ... 130 3e-29
UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1; uncult... 130 3e-29
UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54; Ga... 130 3e-29
UniRef50_Q95QN2 Cluster: Putative uncharacterized protein; n=2; ... 130 4e-29
UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX... 130 4e-29
UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11; Cyano... 129 5e-29
UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18; ... 129 7e-29
UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4; W... 129 7e-29
UniRef50_Q1MYS3 Cluster: Probable ATP-dependent RNA helicase; n=... 129 7e-29
UniRef50_A6FEC9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 129 7e-29
UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog; ... 129 7e-29
UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 128 9e-29
UniRef50_Q9SB89 Cluster: DEAD-box ATP-dependent RNA helicase 27;... 128 9e-29
UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein; ... 128 1e-28
UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;... 128 1e-28
UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4; Legion... 128 2e-28
UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=... 128 2e-28
UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1; ... 128 2e-28
UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1; Bdello... 127 2e-28
UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH f... 127 3e-28
UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box fa... 127 3e-28
UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein; ... 127 3e-28
UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellul... 126 4e-28
UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein; ... 126 4e-28
UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3; P... 126 4e-28
UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lambl... 126 4e-28
UniRef50_Q8D3Y6 Cluster: ATP-dependent RNA helicase, DEAD box fa... 126 5e-28
UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10; ... 126 6e-28
UniRef50_Q4UBP8 Cluster: RNA helicase, putative; n=4; Eukaryota|... 126 6e-28
UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep: ... 126 6e-28
UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein; ... 126 6e-28
UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3; Methanosarc... 126 6e-28
UniRef50_Q5QVE4 Cluster: ATP-dependent RNA helicase; n=2; Idioma... 125 8e-28
UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=... 125 8e-28
UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;... 125 8e-28
UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein; ... 125 8e-28
UniRef50_Q9SWV9 Cluster: Ethylene-responsive RNA helicase; n=5; ... 125 8e-28
UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5; Viridiplanta... 125 8e-28
UniRef50_A5BHG9 Cluster: Putative uncharacterized protein; n=1; ... 125 8e-28
UniRef50_Q54CD8 Cluster: Putative RNA helicase; n=2; Dictyosteli... 125 8e-28
UniRef50_Q4JF01 Cluster: Vasa homlogue; n=2; Eukaryota|Rep: Vasa... 125 8e-28
UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13; ... 125 8e-28
UniRef50_UPI0000D57716 Cluster: PREDICTED: similar to CG9143-PA;... 125 1e-27
UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducibl... 125 1e-27
UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=... 125 1e-27
UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein; ... 125 1e-27
UniRef50_Q03532 Cluster: ATP-dependent RNA helicase HAS1; n=70; ... 125 1e-27
UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1; Thiomi... 124 1e-27
UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=... 124 1e-27
UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|R... 124 1e-27
UniRef50_Q4N215 Cluster: RNA helicase, putative; n=3; Aconoidasi... 124 1e-27
UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellu... 124 2e-27
UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1; Mesopl... 124 2e-27
UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15; Cyan... 124 2e-27
UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3; Clostr... 124 2e-27
UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=... 124 2e-27
UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein; ... 124 2e-27
UniRef50_Q95XM9 Cluster: Putative uncharacterized protein; n=2; ... 124 2e-27
UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma j... 124 2e-27
UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1; U... 124 2e-27
UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10; ... 124 2e-27
UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3; Sphingomonad... 124 2e-27
UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3; Sphingo... 124 2e-27
UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein; ... 124 2e-27
UniRef50_P21507 Cluster: ATP-dependent RNA helicase srmB; n=82; ... 124 2e-27
UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;... 124 2e-27
UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 124 2e-27
UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1; ... 123 3e-27
UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellu... 123 3e-27
UniRef50_A4BBH5 Cluster: Probable ATP-dependent RNA helicase; n=... 123 3e-27
UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=... 123 3e-27
UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;... 123 3e-27
UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1; Mycopl... 123 4e-27
UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=... 123 4e-27
UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=... 123 4e-27
UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 123 4e-27
UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=... 123 4e-27
UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=... 123 4e-27
UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-... 123 4e-27
UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1; C... 123 4e-27
UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;... 123 4e-27
UniRef50_UPI00006CA44F Cluster: DEAD/DEAH box helicase family pr... 122 6e-27
UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia psych... 122 6e-27
UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-li... 122 6e-27
UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein; ... 122 6e-27
UniRef50_Q54CB8 Cluster: Putative uncharacterized protein; n=1; ... 122 6e-27
UniRef50_A7S2R2 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 122 6e-27
UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase MJ0... 122 6e-27
UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9; F... 122 6e-27
UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n... 122 8e-27
UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box fa... 122 8e-27
UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein; ... 122 8e-27
UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1; ... 122 8e-27
UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;... 122 8e-27
UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2; Glucon... 122 1e-26
UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein; ... 122 1e-26
UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21; Gamm... 122 1e-26
UniRef50_Q9N478 Cluster: Putative uncharacterized protein; n=2; ... 122 1e-26
UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyosteli... 122 1e-26
UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10; Proteobac... 121 1e-26
UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1; Blasto... 121 1e-26
UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A fami... 121 1e-26
UniRef50_O74393 Cluster: ATP-dependent RNA helicase mak5; n=1; S... 121 1e-26
UniRef50_Q4IF76 Cluster: ATP-dependent RNA helicase DBP2; n=4; F... 121 1e-26
UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3; Actino... 121 2e-26
UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytoph... 121 2e-26
UniRef50_Q8I0W7 Cluster: Snrnp protein, putative; n=6; Plasmodiu... 121 2e-26
UniRef50_Q5CP59 Cluster: DEAD box polypeptide, Y chromosome-rela... 121 2e-26
UniRef50_Q86XP3 Cluster: ATP-dependent RNA helicase DDX42; n=47;... 121 2e-26
UniRef50_Q13206 Cluster: Probable ATP-dependent RNA helicase DDX... 121 2e-26
UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5; Firmic... 120 2e-26
UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12; Clost... 120 2e-26
UniRef50_A2YDR2 Cluster: Putative uncharacterized protein; n=2; ... 120 2e-26
UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2; ... 120 2e-26
UniRef50_Q9SF41 Cluster: DEAD-box ATP-dependent RNA helicase 45;... 120 2e-26
UniRef50_Q8H0U8 Cluster: DEAD-box ATP-dependent RNA helicase 42;... 120 2e-26
UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1; Flavob... 120 3e-26
UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinek... 120 3e-26
UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein; ... 120 3e-26
UniRef50_A5K9H3 Cluster: Pre-mRNA splicing factor RNA helicase P... 120 3e-26
UniRef50_P44701 Cluster: ATP-dependent RNA helicase srmB homolog... 120 3e-26
UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 120 3e-26
UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog; ... 120 3e-26
UniRef50_Q12389 Cluster: ATP-dependent RNA helicase DBP10; n=10;... 120 3e-26
UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=... 120 4e-26
UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellu... 120 4e-26
UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1; Neptun... 120 4e-26
UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX... 120 4e-26
UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p; ... 119 5e-26
UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box fa... 119 5e-26
UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein; ... 119 5e-26
UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 119 5e-26
UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3; Thermopro... 119 5e-26
UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;... 119 7e-26
UniRef50_UPI0000ECBDA5 Cluster: ATP-dependent RNA helicase DDX24... 119 7e-26
UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35; ... 119 7e-26
UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3; Altero... 119 7e-26
UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28; Alphaproteo... 119 7e-26
UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20; Franc... 119 7e-26
UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2; Alphaproteob... 119 7e-26
UniRef50_A2FYU9 Cluster: DEAD/DEAH box helicase family protein; ... 119 7e-26
UniRef50_A2XVF7 Cluster: DEAD-box ATP-dependent RNA helicase 13;... 119 7e-26
UniRef50_Q80Y44 Cluster: Probable ATP-dependent RNA helicase DDX... 119 7e-26
UniRef50_Q2H2J1 Cluster: ATP-dependent RNA helicase DBP4; n=14; ... 119 7e-26
UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=... 118 9e-26
UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=... 118 9e-26
UniRef50_Q17II7 Cluster: DEAD box ATP-dependent RNA helicase; n=... 118 9e-26
UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein; ... 118 9e-26
UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhl... 118 9e-26
UniRef50_Q6C835 Cluster: ATP-dependent RNA helicase DBP7; n=1; Y... 118 9e-26
UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2; ... 118 9e-26
UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome sh... 118 1e-25
UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE; ... 118 1e-25
UniRef50_A0C015 Cluster: Chromosome undetermined scaffold_14, wh... 118 1e-25
UniRef50_Q6C024 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 118 1e-25
UniRef50_A5DAR2 Cluster: ATP-dependent RNA helicase DBP7; n=2; P... 118 1e-25
UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20; ... 118 1e-25
UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;... 118 1e-25
UniRef50_Q480Z7 Cluster: ATP-dependent RNA helicase, DEAD box fa... 118 2e-25
UniRef50_Q1I3W1 Cluster: ATP-dependent RNA helicase RhlE, DEAD b... 118 2e-25
UniRef50_Q18W60 Cluster: DEAD/DEAH box helicase-like; n=2; Desul... 118 2e-25
UniRef50_A5G1U8 Cluster: DEAD/DEAH box helicase domain protein; ... 118 2e-25
UniRef50_Q688Z4 Cluster: Putative uncharacterized protein; n=3; ... 118 2e-25
UniRef50_O97032 Cluster: DjVLGB; n=2; Dugesia|Rep: DjVLGB - Duge... 118 2e-25
UniRef50_Q9M2F9 Cluster: DEAD-box ATP-dependent RNA helicase 52;... 118 2e-25
UniRef50_A3LWH3 Cluster: ATP-dependent RNA helicase DBP7; n=2; S... 118 2e-25
UniRef50_Q9KNA4 Cluster: ATP-dependent RNA helicase, DEAD box fa... 117 2e-25
UniRef50_Q12B10 Cluster: DEAD/DEAH box helicase-like; n=13; Prot... 117 2e-25
UniRef50_A6DML6 Cluster: ATP-dependent RNA helicase; n=1; Lentis... 117 2e-25
UniRef50_A5EYB1 Cluster: ATP-dependent rna helicase Rhl; n=2; Ga... 117 2e-25
UniRef50_Q8MZI3 Cluster: GH10652p; n=2; Drosophila melanogaster|... 117 2e-25
UniRef50_Q754J2 Cluster: ATP-dependent RNA helicase DBP7; n=1; E... 117 2e-25
UniRef50_Q6C7X8 Cluster: ATP-dependent RNA helicase DBP10; n=3; ... 117 2e-25
UniRef50_UPI0000DAE40A Cluster: hypothetical protein Rgryl_01000... 117 3e-25
UniRef50_Q8F0Q7 Cluster: ATP-dependent RNA helicase; n=4; Leptos... 117 3e-25
UniRef50_Q1QYG3 Cluster: DEAD/DEAH box helicase-like protein; n=... 117 3e-25
UniRef50_Q869K2 Cluster: Similar to Dictyostelium discoideum (Sl... 117 3e-25
UniRef50_Q5BYH3 Cluster: SJCHGC05414 protein; n=1; Schistosoma j... 117 3e-25
UniRef50_A5K2E0 Cluster: DEAD/DEAH box ATP-dependent RNA helicas... 117 3e-25
UniRef50_Q1DMX8 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 117 3e-25
UniRef50_Q4P5U4 Cluster: ATP-dependent RNA helicase DBP4; n=1; U... 117 3e-25
UniRef50_Q0UMB6 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 117 3e-25
UniRef50_UPI0000498886 Cluster: DEAD/DEAH box helicase; n=1; Ent... 116 4e-25
UniRef50_A0KXT6 Cluster: DEAD/DEAH box helicase domain protein; ... 116 4e-25
UniRef50_Q2PZC2 Cluster: Vasa protein; n=3; Apidae|Rep: Vasa pro... 116 4e-25
UniRef50_Q16JA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 116 4e-25
UniRef50_Q7S6F3 Cluster: ATP-dependent RNA helicase dbp-9; n=14;... 116 4e-25
UniRef50_Q2H0R2 Cluster: ATP-dependent RNA helicase DBP10; n=1; ... 116 4e-25
UniRef50_Q3AZR1 Cluster: DEAD/DEAH box helicase-like; n=2; Synec... 116 5e-25
UniRef50_Q9S531 Cluster: DEAD-box protein; n=4; Cystobacterineae... 116 5e-25
UniRef50_Q41FS1 Cluster: IMP dehydrogenase/GMP reductase:Helicas... 116 5e-25
UniRef50_A3ZXX1 Cluster: ATP-dependent RNA helicase; n=2; Planct... 116 5e-25
UniRef50_Q5CWJ4 Cluster: Drs1p, eIF4a-1-family RNA SFII helicase... 116 5e-25
UniRef50_A2EAD4 Cluster: DEAD/DEAH box helicase family protein; ... 116 5e-25
UniRef50_Q2NEZ7 Cluster: Predicted helicase; n=6; cellular organ... 116 5e-25
UniRef50_Q93Y39 Cluster: DEAD-box ATP-dependent RNA helicase 13;... 116 5e-25
UniRef50_Q10202 Cluster: ATP-dependent RNA helicase dbp3; n=1; S... 116 5e-25
UniRef50_Q9VHP0 Cluster: ATP-dependent RNA helicase bel; n=4; Pr... 116 5e-25
UniRef50_Q81QF0 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 116 7e-25
UniRef50_Q0RTL3 Cluster: Cold-shock DeaD box ATP-dependent RNA h... 116 7e-25
UniRef50_A6Q8Y9 Cluster: ATP-dependent RNA helicase, DEAD-box fa... 116 7e-25
UniRef50_A6H0L1 Cluster: Probable ATP-dependent RNA helicase, DE... 116 7e-25
UniRef50_A5CVQ6 Cluster: ATP-dependent RNA helicase DeaD; n=2; s... 116 7e-25
UniRef50_Q9VX34 Cluster: CG5800-PA; n=2; Sophophora|Rep: CG5800-... 116 7e-25
UniRef50_Q4PFD9 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 116 7e-25
UniRef50_Q6MN67 Cluster: ATP-dependent RNA helicase; n=3; Deltap... 115 9e-25
UniRef50_Q5FNK0 Cluster: ATP-dependent RNA helicase; n=1; Glucon... 115 9e-25
UniRef50_Q1N6E2 Cluster: ATP-dependent RNA helicase; n=1; Oceano... 115 9e-25
UniRef50_Q01PH0 Cluster: DEAD/DEAH box helicase domain protein; ... 115 9e-25
UniRef50_UPI0001555979 Cluster: PREDICTED: similar to ATP-depend... 115 1e-24
UniRef50_Q7UNV7 Cluster: ATP-dependent RNA helicase; n=2; Planct... 115 1e-24
UniRef50_Q4Z5Q6 Cluster: ATP-dependent RNA helicase, putative; n... 115 1e-24
UniRef50_A7APE7 Cluster: DEAD/DEAH box helicase domain containin... 115 1e-24
UniRef50_A2SQE1 Cluster: DEAD/DEAH box helicase domain protein; ... 115 1e-24
UniRef50_P09052 Cluster: ATP-dependent RNA helicase vasa; n=5; E... 115 1e-24
UniRef50_O49289 Cluster: Putative DEAD-box ATP-dependent RNA hel... 115 1e-24
UniRef50_A4R5B8 Cluster: ATP-dependent RNA helicase DBP10; n=2; ... 115 1e-24
UniRef50_Q3SF48 Cluster: DEAD/DEAH box helicase; n=6; cellular o... 114 2e-24
UniRef50_A1USG3 Cluster: DEAD/DEAH box helicase domain/helicase ... 114 2e-24
UniRef50_A0DK92 Cluster: Chromosome undetermined scaffold_54, wh... 114 2e-24
UniRef50_A0CUL6 Cluster: Chromosome undetermined scaffold_28, wh... 114 2e-24
UniRef50_Q9NY93 Cluster: Probable ATP-dependent RNA helicase DDX... 114 2e-24
UniRef50_O00571 Cluster: ATP-dependent RNA helicase DDX3X; n=74;... 114 2e-24
UniRef50_Q14NT1 Cluster: Putative atp-dependent rna helicase pro... 114 2e-24
UniRef50_A2U4F0 Cluster: Putative ATP-dependent RNA helicase; n=... 114 2e-24
UniRef50_Q4JG17 Cluster: Vasa-like protein; n=1; Litopenaeus van... 114 2e-24
UniRef50_Q16W98 Cluster: DEAD box ATP-dependent RNA helicase; n=... 114 2e-24
UniRef50_Q9PA24 Cluster: ATP-dependent RNA helicase rhlB; n=87; ... 114 2e-24
UniRef50_Q5N7W4 Cluster: DEAD-box ATP-dependent RNA helicase 30;... 114 2e-24
UniRef50_Q4IP34 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 114 2e-24
UniRef50_A6VX62 Cluster: DEAD/DEAH box helicase domain protein; ... 113 3e-24
UniRef50_A4J5M3 Cluster: DEAD/DEAH box helicase domain protein; ... 113 3e-24
UniRef50_A0VLH7 Cluster: DEAD/DEAH box helicase domain protein; ... 113 3e-24
UniRef50_Q9GV13 Cluster: Vasa-related protein CnVAS1; n=3; Eumet... 113 3e-24
UniRef50_Q8I416 Cluster: ATP-dependent RNA helicase, putative; n... 113 3e-24
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=... 113 3e-24
UniRef50_Q5KJI2 Cluster: ATP-dependent RNA helicase DHH1; n=4; D... 113 3e-24
UniRef50_UPI00003C8469 Cluster: hypothetical protein Faci_030017... 113 4e-24
UniRef50_Q30YG9 Cluster: DEAD/DEAH box helicase-like; n=3; Delta... 113 4e-24
UniRef50_Q0S0C5 Cluster: Possible ATP-dependent RNA helicase; n=... 113 4e-24
UniRef50_A7BCL2 Cluster: Putative uncharacterized protein; n=1; ... 113 4e-24
UniRef50_A6NSW7 Cluster: Putative uncharacterized protein; n=1; ... 113 4e-24
UniRef50_Q012E3 Cluster: DEAD-box protein abstrakt; n=1; Ostreoc... 113 4e-24
UniRef50_Q2GSC7 Cluster: Putative uncharacterized protein; n=6; ... 113 4e-24
UniRef50_Q978T9 Cluster: ATP-dependent RNA helicase; n=3; Thermo... 113 4e-24
UniRef50_Q5KME7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 113 4e-24
UniRef50_A5DU73 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 113 4e-24
UniRef50_UPI000051A2EE Cluster: PREDICTED: similar to Helicase C... 113 5e-24
UniRef50_Q2Z064 Cluster: Probable ATP-dependent RNA helicase; n=... 113 5e-24
UniRef50_A5K917 Cluster: DEAD/DEAH box helicase, putative; n=4; ... 113 5e-24
UniRef50_Q9H8H2 Cluster: Probable ATP-dependent RNA helicase DDX... 113 5e-24
UniRef50_Q6MBR0 Cluster: Putative ATP-dependent RNA helicase; n=... 112 6e-24
UniRef50_Q2S6I0 Cluster: ATP-dependent RNA helicase; n=1; Salini... 112 6e-24
UniRef50_A7PDS5 Cluster: Chromosome chr11 scaffold_13, whole gen... 112 6e-24
UniRef50_Q65XX1 Cluster: Vasa-and belle-like helicase protein 1,... 112 6e-24
UniRef50_A7TJK8 Cluster: Putative uncharacterized protein; n=1; ... 112 6e-24
UniRef50_Q6BKH3 Cluster: ATP-dependent RNA helicase DBP7; n=2; S... 112 6e-24
UniRef50_UPI0001509D93 Cluster: DEAD/DEAH box helicase family pr... 112 8e-24
UniRef50_Q6AMK6 Cluster: Probable ATP-dependent RNA helicase; n=... 112 8e-24
UniRef50_Q1IMK6 Cluster: DEAD/DEAH box helicase-like; n=1; Acido... 112 8e-24
UniRef50_A0RP33 Cluster: Putative ATP-dependent RNA helicase Rhl... 112 8e-24
UniRef50_Q013X8 Cluster: DEAD/DEAH box RNA helicase; n=1; Ostreo... 112 8e-24
UniRef50_A2D7F9 Cluster: DEAD/DEAH box helicase family protein; ... 112 8e-24
UniRef50_UPI00015B617E Cluster: PREDICTED: hypothetical protein;... 111 1e-23
UniRef50_UPI0000E87E35 Cluster: putative ATP-dependent RNA helic... 111 1e-23
UniRef50_UPI0000DB7667 Cluster: PREDICTED: similar to CG32344-PA... 111 1e-23
UniRef50_Q5QWG1 Cluster: ATP-dependent RNA helicase; n=1; Idioma... 111 1e-23
UniRef50_Q2BIX8 Cluster: Probable ATP-dependent RNA helicase; n=... 111 1e-23
UniRef50_A4C0F9 Cluster: ATP-dependent RNA helicase; n=6; Bacter... 111 1e-23
UniRef50_Q4UA43 Cluster: DEAD-family helicase, putative; n=3; Pi... 111 1e-23
UniRef50_Q4QIQ9 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 111 1e-23
UniRef50_UPI00015B5BA9 Cluster: PREDICTED: similar to RE48840p; ... 111 1e-23
UniRef50_UPI00006CDDA3 Cluster: CLN3 protein; n=1; Tetrahymena t... 111 1e-23
UniRef50_Q15T34 Cluster: DEAD/DEAH box helicase-like; n=1; Pseud... 111 1e-23
UniRef50_A4LYS0 Cluster: DEAD/DEAH box helicase domain protein; ... 111 1e-23
UniRef50_A4S107 Cluster: Predicted protein; n=1; Ostreococcus lu... 111 1e-23
UniRef50_Q8IL14 Cluster: Helicase, truncated, putative; n=3; Euk... 111 1e-23
UniRef50_Q4RK69 Cluster: Chromosome 2 SCAF15032, whole genome sh... 111 2e-23
UniRef50_Q32LU9 Cluster: LOC562123 protein; n=3; Danio rerio|Rep... 111 2e-23
UniRef50_Q62J95 Cluster: ATP-dependent RNA helicase RhlE, putati... 111 2e-23
UniRef50_A4AFV6 Cluster: ATP-dependent RNA helicase; n=3; Actino... 111 2e-23
UniRef50_A2U1Q9 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 111 2e-23
UniRef50_A0D232 Cluster: Chromosome undetermined scaffold_35, wh... 111 2e-23
UniRef50_Q9FZ92 Cluster: Putative DEAD-box ATP-dependent RNA hel... 111 2e-23
UniRef50_Q0HKH0 Cluster: DEAD/DEAH box helicase domain protein; ... 110 2e-23
UniRef50_A7HDE9 Cluster: DEAD/DEAH box helicase domain protein; ... 110 2e-23
UniRef50_A6VWX2 Cluster: DEAD/DEAH box helicase domain protein; ... 110 2e-23
UniRef50_Q7QUN8 Cluster: GLP_47_37459_39102; n=1; Giardia lambli... 110 2e-23
UniRef50_Q6BG49 Cluster: RNA helicase, putative; n=1; Paramecium... 110 2e-23
UniRef50_A7AWJ7 Cluster: DEAD/DEAH box helicase and helicase con... 110 2e-23
UniRef50_A3FQ46 Cluster: U5 snRNP 100 kD protein, putative; n=2;... 110 2e-23
UniRef50_A2DSJ0 Cluster: DEAD/DEAH box helicase family protein; ... 110 2e-23
UniRef50_A0C369 Cluster: Chromosome undetermined scaffold_146, w... 110 2e-23
UniRef50_UPI00015B5BD1 Cluster: PREDICTED: similar to RE48840p; ... 110 3e-23
UniRef50_UPI00004994C0 Cluster: DEAD/DEAH box helicase; n=2; Ent... 110 3e-23
UniRef50_A6W6A7 Cluster: DEAD/DEAH box helicase domain protein; ... 110 3e-23
UniRef50_Q9N5K1 Cluster: Putative uncharacterized protein; n=2; ... 110 3e-23
UniRef50_Q8SY39 Cluster: LD28101p; n=3; Diptera|Rep: LD28101p - ... 110 3e-23
UniRef50_Q17KA8 Cluster: DEAD box ATP-dependent RNA helicase; n=... 110 3e-23
UniRef50_UPI0000498E70 Cluster: DEAD/DEAH box helicase; n=1; Ent... 109 4e-23
UniRef50_A3JG19 Cluster: ATP-dependent RNA helicase; n=1; Marino... 109 4e-23
UniRef50_A0V009 Cluster: DEAD/DEAH box helicase-like; n=1; Clost... 109 4e-23
UniRef50_Q869P0 Cluster: Similar to Homo sapiens (Human). DEAD/D... 109 4e-23
UniRef50_Q54VF1 Cluster: Putative uncharacterized protein; n=1; ... 109 4e-23
UniRef50_A7U5X2 Cluster: DEAD-box helicase 15; n=2; Plasmodium f... 109 4e-23
UniRef50_A7AWZ5 Cluster: DEAD/DEAH box helicase and helicase con... 109 4e-23
UniRef50_Q6BLU9 Cluster: Pre-mRNA-splicing ATP-dependent RNA hel... 109 4e-23
UniRef50_Q5KN79 Cluster: ATP-dependent RNA helicase DBP4; n=1; F... 109 4e-23
UniRef50_UPI0000D573C1 Cluster: PREDICTED: similar to CG8611-PA,... 109 6e-23
UniRef50_UPI00015A4B44 Cluster: DEAD (Asp-Glu-Ala-Asp) box polyp... 109 6e-23
UniRef50_A4S294 Cluster: Predicted protein; n=1; Ostreococcus lu... 109 6e-23
UniRef50_A5E058 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 109 6e-23
UniRef50_A4QTR1 Cluster: ATP-dependent RNA helicase DBP9; n=4; A... 109 6e-23
UniRef50_Q41F45 Cluster: Helicase, C-terminal:DEAD/DEAH box heli... 109 8e-23
UniRef50_A1VA48 Cluster: DEAD/DEAH box helicase domain protein; ... 109 8e-23
UniRef50_A1KUM8 Cluster: Putative ATP-dependent RNA helicase; n=... 109 8e-23
UniRef50_A0KZD5 Cluster: DEAD/DEAH box helicase domain protein; ... 109 8e-23
UniRef50_A4S6F2 Cluster: Predicted protein; n=1; Ostreococcus lu... 109 8e-23
UniRef50_Q4QFH1 Cluster: ATP-dependent RNA helicase, putative; n... 109 8e-23
UniRef50_A6RW79 Cluster: Putative uncharacterized protein; n=1; ... 109 8e-23
UniRef50_UPI00015B6103 Cluster: PREDICTED: similar to CG8611-PB;... 108 1e-22
UniRef50_Q013Q9 Cluster: DEAD/DEAH box helicase, putative; n=7; ... 108 1e-22
UniRef50_Q240I5 Cluster: DEAD/DEAH box helicase family protein; ... 108 1e-22
UniRef50_Q13838 Cluster: Spliceosome RNA helicase BAT1; n=55; Eu... 108 1e-22
UniRef50_P19109 Cluster: ATP-dependent RNA helicase p62; n=9; Eu... 108 1e-22
UniRef50_Q0UN57 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 108 1e-22
UniRef50_Q26696 Cluster: Putative DEAD-box RNA helicase HEL64; n... 108 1e-22
UniRef50_Q9NVP1 Cluster: ATP-dependent RNA helicase DDX18; n=24;... 108 1e-22
UniRef50_Q9UTP9 Cluster: ATP-dependent RNA helicase dbp4; n=1; S... 108 1e-22
UniRef50_P24784 Cluster: ATP-dependent RNA helicase DBP1; n=103;... 108 1e-22
UniRef50_Q5GZA1 Cluster: ATP-dependent RNA helicase; n=6; Xantho... 108 1e-22
UniRef50_Q11WD3 Cluster: Possible ATP-dependent RNA helicase; n=... 108 1e-22
UniRef50_Q4Q2Z6 Cluster: ATP-dependent RNA helicase, putative; n... 108 1e-22
UniRef50_Q388E8 Cluster: ATP-dependent DEAD/H RNA helicase, puta... 108 1e-22
UniRef50_Q2FKY7 Cluster: DEAD/DEAH box helicase-like; n=1; Metha... 108 1e-22
UniRef50_P21693 Cluster: ATP-independent RNA helicase dbpA; n=19... 108 1e-22
UniRef50_A5KB15 Cluster: ATP-dependent RNA helicase, putative; n... 107 2e-22
UniRef50_Q0E3X4 Cluster: DEAD-box ATP-dependent RNA helicase 35A... 107 2e-22
UniRef50_Q9P7C7 Cluster: Pre-mRNA-processing ATP-dependent RNA h... 107 2e-22
UniRef50_Q0U6X2 Cluster: ATP-dependent RNA helicase MAK5; n=2; P... 107 2e-22
UniRef50_UPI00004992E6 Cluster: DEAD/DEAH box helicase; n=3; Ent... 107 2e-22
UniRef50_Q11U28 Cluster: ATP-dependent RNA helicase protein; n=4... 107 2e-22
UniRef50_O07897 Cluster: Heat resistant RNA dependent ATPase; n=... 107 2e-22
UniRef50_A7CSF3 Cluster: DEAD/DEAH box helicase domain protein; ... 107 2e-22
UniRef50_A0M3C7 Cluster: RhlE-like DEAD box family ATP-dependent... 107 2e-22
UniRef50_Q5CNJ7 Cluster: Similar to RNA-dependent helicase p68; ... 107 2e-22
UniRef50_Q4UE18 Cluster: RNA helicase, putative; n=2; Theileria|... 107 2e-22
UniRef50_A2E5C2 Cluster: DEAD/DEAH box helicase family protein; ... 107 2e-22
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3... 107 2e-22
UniRef50_Q9RKJ0 Cluster: ATP-dependent RNA helicase; n=2; Strept... 107 3e-22
UniRef50_Q893G8 Cluster: ATP-dependent RNA helicase; n=4; Clostr... 107 3e-22
UniRef50_A6QC93 Cluster: ATP-independent RNA helicase DbpA; n=1;... 107 3e-22
UniRef50_A6DK15 Cluster: ATP-dependent RNA helicase, specific fo... 107 3e-22
UniRef50_Q9LYJ9 Cluster: DEAD-box ATP-dependent RNA helicase 46;... 107 3e-22
UniRef50_Q9FNM7 Cluster: DEAD-box ATP-dependent RNA helicase 26;... 107 3e-22
UniRef50_Q4IBS2 Cluster: ATP-dependent RNA helicase MAK5; n=2; S... 107 3e-22
UniRef50_Q7MT81 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 106 4e-22
UniRef50_Q0S0C7 Cluster: ATP-dependent RNA helicase; n=5; Actino... 106 4e-22
UniRef50_A4RW46 Cluster: Predicted protein; n=2; Ostreococcus|Re... 106 4e-22
UniRef50_Q4N0E9 Cluster: ATP-dependent RNA helicase, putative; n... 106 4e-22
UniRef50_Q9C551 Cluster: DEAD-box ATP-dependent RNA helicase 5; ... 106 4e-22
UniRef50_UPI0000E48294 Cluster: PREDICTED: similar to DEAD (Asp-... 106 5e-22
UniRef50_Q4T821 Cluster: Chromosome undetermined SCAF7914, whole... 106 5e-22
UniRef50_Q6D2K3 Cluster: ATP-independent RNA helicase; n=6; Prot... 106 5e-22
UniRef50_O83749 Cluster: ATP-dependent RNA helicase; n=2; Trepon... 106 5e-22
UniRef50_A4C6L9 Cluster: ATP-dependent RNA helicase, DEAD box fa... 106 5e-22
UniRef50_Q9GV07 Cluster: Vasa-related protein PlVAS1; n=1; Duges... 106 5e-22
UniRef50_Q4MYL1 Cluster: ATP-dependent RNA helicase, putative; n... 106 5e-22
UniRef50_A4IBK1 Cluster: ATP-dependent RNA helicase, putative; n... 106 5e-22
UniRef50_Q27268 Cluster: ATP-dependent RNA helicase WM6; n=82; E... 106 5e-22
UniRef50_Q9HXE5 Cluster: ATP-dependent RNA helicase rhlB; n=22; ... 106 5e-22
UniRef50_O00148 Cluster: ATP-dependent RNA helicase DDX39; n=27;... 106 5e-22
UniRef50_UPI0000566899 Cluster: UPI0000566899 related cluster; n... 105 7e-22
UniRef50_A6DL95 Cluster: Probable ATP-dependent RNA helicase; n=... 105 7e-22
UniRef50_A0UX17 Cluster: DEAD/DEAH box helicase-like; n=5; Clost... 105 7e-22
UniRef50_Q9GV12 Cluster: Vasa-related protein CnVAS2; n=14; Eume... 105 7e-22
UniRef50_Q6T442 Cluster: Hel61; n=4; Leishmania|Rep: Hel61 - Lei... 105 7e-22
UniRef50_A0BDT5 Cluster: Chromosome undetermined scaffold_101, w... 105 7e-22
UniRef50_Q0TQ86 Cluster: ATP-dependent RNA helicase, DEAD/DEAH b... 105 9e-22
UniRef50_Q238V7 Cluster: Type III restriction enzyme, res subuni... 105 9e-22
UniRef50_O97031 Cluster: DjVLGA; n=1; Dugesia japonica|Rep: DjVL... 105 9e-22
UniRef50_A7RKF5 Cluster: Predicted protein; n=1; Nematostella ve... 105 9e-22
UniRef50_Q6K7R9 Cluster: DEAD-box ATP-dependent RNA helicase 48;... 105 9e-22
UniRef50_A2QA23 Cluster: ATP-dependent RNA helicase dbp6; n=1; A... 105 9e-22
UniRef50_UPI00006CD03A Cluster: P68-like protein, putative; n=1;... 105 1e-21
UniRef50_Q6NHC6 Cluster: Putative RNA helicase; n=2; Corynebacte... 105 1e-21
UniRef50_Q6APU7 Cluster: Related to ATP-dependent RNA helicase; ... 105 1e-21
UniRef50_Q1Q4V2 Cluster: Similar to ATP-independent RNA helicase... 105 1e-21
UniRef50_Q5CX71 Cluster: Hca4p helicase DBP4 (Helicase CA4). EIF... 105 1e-21
UniRef50_Q3ZDP1 Cluster: Vasa-like protein; n=7; Neoptera|Rep: V... 105 1e-21
UniRef50_Q4PDT1 Cluster: ATP-dependent RNA helicase DBP3; n=1; U... 105 1e-21
UniRef50_A4S507 Cluster: Predicted protein; n=2; Ostreococcus|Re... 104 2e-21
UniRef50_Q5CHB7 Cluster: Putative uncharacterized protein; n=2; ... 104 2e-21
UniRef50_A7SJ72 Cluster: Predicted protein; n=1; Nematostella ve... 104 2e-21
UniRef50_A2DH37 Cluster: DEAD/DEAH box helicase family protein; ... 104 2e-21
UniRef50_A6RSH5 Cluster: Putative uncharacterized protein; n=2; ... 104 2e-21
UniRef50_Q9SQV1 Cluster: Probable DEAD-box ATP-dependent RNA hel... 104 2e-21
UniRef50_Q8SQK9 Cluster: ATP-dependent RNA helicase DHH1; n=1; E... 104 2e-21
UniRef50_Q54TD7 Cluster: Putative uncharacterized protein; n=1; ... 66 2e-21
UniRef50_UPI0001509DC1 Cluster: DEAD/DEAH box helicase family pr... 104 2e-21
UniRef50_UPI00004988F8 Cluster: DEAD/DEAH box helicase; n=1; Ent... 104 2e-21
UniRef50_Q6A841 Cluster: Putative ATP-dependent RNA helicase; n=... 104 2e-21
UniRef50_A3WBM2 Cluster: Cold-shock dead-box protein A; n=1; Ery... 104 2e-21
UniRef50_Q9LU46 Cluster: DEAD-box ATP-dependent RNA helicase 35;... 104 2e-21
UniRef50_Q0UZ59 Cluster: ATP-dependent RNA helicase DBP9; n=1; P... 104 2e-21
UniRef50_Q4SWK6 Cluster: Chromosome 12 SCAF13614, whole genome s... 103 3e-21
UniRef50_Q9K7L3 Cluster: RNA helicase; n=2; Bacillus|Rep: RNA he... 103 3e-21
UniRef50_A4B385 Cluster: ATP-dependent RNA helicase, DEAD box fa... 103 3e-21
>UniRef50_Q9H0S4 Cluster: Probable ATP-dependent RNA helicase DDX47;
n=32; Eukaryota|Rep: Probable ATP-dependent RNA helicase
DDX47 - Homo sapiens (Human)
Length = 455
Score = 287 bits (705), Expect = 1e-76
Identities = 140/181 (77%), Positives = 158/181 (87%), Gaps = 1/181 (0%)
Frame = +2
Query: 119 EVEQTPTENVNEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDI 295
E +PTE E+++ TFKDLGV DVLCEAC++L W KP+KIQ EAIP+AL G+DI
Sbjct: 5 EEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDI 64
Query: 296 IGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCA 475
IGLAETGSGKTGAFALPIL ALLE PQR FAL+LTPTRELAFQISEQFEALG+SIGV+ A
Sbjct: 65 IGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSA 124
Query: 476 VIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
VIVGG+D ++Q+L L+KKPHIIIATPGRL+DHLENTKGFNLR LKYLVMDEADRILNMDF
Sbjct: 125 VIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDF 184
Query: 656 E 658
E
Sbjct: 185 E 185
>UniRef50_A4UCU0 Cluster: DEAD box polypeptide 47 isoform 1 variant;
n=9; Coelomata|Rep: DEAD box polypeptide 47 isoform 1
variant - Homo sapiens (Human)
Length = 182
Score = 285 bits (699), Expect = 6e-76
Identities = 136/166 (81%), Positives = 152/166 (91%)
Frame = +2
Query: 161 EDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFA 340
E++ TFKDLGV DVLCEAC++L W KP+KIQ EAIP+AL G+DIIGLAETGSGKTGAFA
Sbjct: 9 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 68
Query: 341 LPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
LPIL ALLE PQR FAL+LTPTRELAFQISEQFEALG+SIGV+ AVIVGG+D ++Q+L L
Sbjct: 69 LPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL 128
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+KKPHIIIATPGRL+DHLENTKGFNLR LKYLVMDEADRILNMDFE
Sbjct: 129 AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFE 174
>UniRef50_Q4N4B1 Cluster: ATP-dependent RNA helicase, putative; n=4;
Eukaryota|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 470
Score = 244 bits (597), Expect = 1e-63
Identities = 114/191 (59%), Positives = 144/191 (75%)
Frame = +2
Query: 86 ESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEA 265
E Y + T ++D +DD TF+DLGV LC AC+EL WK+P+KIQ EA
Sbjct: 12 EKYKSRLMSSINRKMAVTVEEDDDKDDDTPTFEDLGVCVELCRACKELGWKRPTKIQIEA 71
Query: 266 IPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEA 445
IP+AL GKDIIGLAETGSGKT AF +PILQ LLE PQR F+LIL PTREL+ QI EQ +
Sbjct: 72 IPIALSGKDIIGLAETGSGKTAAFTIPILQKLLEKPQRLFSLILAPTRELSLQIKEQLIS 131
Query: 446 LGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMD 625
LG+ IG+ +I+GG+DMV+QAL LSKKPHII+ +PGR+ DHL+NTKGF+L +KYLV+D
Sbjct: 132 LGSEIGLDVCLILGGLDMVSQALQLSKKPHIIVGSPGRIADHLQNTKGFSLETIKYLVLD 191
Query: 626 EADRILNMDFE 658
EAD++L+ DF+
Sbjct: 192 EADKLLSTDFD 202
>UniRef50_Q4P3U9 Cluster: ATP-dependent rRNA helicase RRP3; n=20;
Eukaryota|Rep: ATP-dependent rRNA helicase RRP3 -
Ustilago maydis (Smut fungus)
Length = 551
Score = 235 bits (575), Expect = 7e-61
Identities = 113/202 (55%), Positives = 154/202 (76%)
Frame = +2
Query: 50 NNDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEEL 229
++D+ + +ADK+S + QD + T + + K+ F DLGV+ + EAC +
Sbjct: 69 DHDDDDDPSADKDSPAADEEQDEKKVATIAD------DGKKVEFSDLGVIPQIVEACTNM 122
Query: 230 KWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTR 409
+K P+ IQ +AIP AL +D+IGLA+TGSGKT AF +PILQAL +NP+ +FA +L PTR
Sbjct: 123 GFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNPKPFFACVLAPTR 182
Query: 410 ELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKG 589
ELA+QIS+Q EALG++IGV+ A IVGGMDM++Q++ LSK+PH+I+ATPGRL DHLENTKG
Sbjct: 183 ELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPHVIVATPGRLQDHLENTKG 242
Query: 590 FNLRPLKYLVMDEADRILNMDF 655
F+LR L+YLVMDEADR+L+MDF
Sbjct: 243 FSLRGLQYLVMDEADRLLDMDF 264
>UniRef50_Q8GY84 Cluster: DEAD-box ATP-dependent RNA helicase 10;
n=34; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
10 - Arabidopsis thaliana (Mouse-ear cress)
Length = 456
Score = 225 bits (549), Expect = 1e-57
Identities = 112/183 (61%), Positives = 142/183 (77%), Gaps = 12/183 (6%)
Frame = +2
Query: 146 VNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGK 325
+ E+ E K TF +LGV + L +ACE L WK PSKIQ EA+P AL GKD+IGLA+TGSGK
Sbjct: 1 MEEENEVVK-TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGK 59
Query: 326 TGAFALPILQALLE-----NPQR-------YFALILTPTRELAFQISEQFEALGASIGVK 469
TGAFA+PILQALLE P++ +FA +L+PTRELA QI+EQFEALGA I ++
Sbjct: 60 TGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLR 119
Query: 470 CAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNM 649
CAV+VGG+D + Q + L K+PH+I+ATPGRL DH+ +TKGF+L+ LKYLV+DEADR+LN
Sbjct: 120 CAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNE 179
Query: 650 DFE 658
DFE
Sbjct: 180 DFE 182
>UniRef50_A7U5W7 Cluster: DEAD-box helicase 2; n=6; Plasmodium|Rep:
DEAD-box helicase 2 - Plasmodium falciparum
Length = 562
Score = 220 bits (537), Expect = 3e-56
Identities = 102/209 (48%), Positives = 151/209 (72%), Gaps = 3/209 (1%)
Frame = +2
Query: 41 IPQNNDNLEKMTADKESYGDET-NQDSEVEQTPTENV--NEDTEDDKITFKDLGVVDVLC 211
I N+DN+ + +K D + + + +V+ +N+ NE+ E +TF+DL + + +
Sbjct: 109 INNNHDNINFIHGNKNKNHDNSFHNNDDVKNGEVKNLVTNEEREKQNVTFEDLNICEEIL 168
Query: 212 EACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFAL 391
E+ +EL WKKP++IQ+E +P A L KDIIGL+ETGSGKT F +PILQ L N Q ++AL
Sbjct: 169 ESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDLKVNKQSFYAL 228
Query: 392 ILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 571
+++PTREL QIS+ F+ALG ++ + I GG+D+V Q+L L+KKP++I++TPGR++DH
Sbjct: 229 VISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVIVSTPGRILDH 288
Query: 572 LENTKGFNLRPLKYLVMDEADRILNMDFE 658
L NTKGFNL+ LKYLV DEAD++L+ DFE
Sbjct: 289 LNNTKGFNLKNLKYLVFDEADKLLSQDFE 317
>UniRef50_P38712 Cluster: ATP-dependent rRNA helicase RRP3; n=6;
Ascomycota|Rep: ATP-dependent rRNA helicase RRP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 501
Score = 215 bits (526), Expect = 6e-55
Identities = 110/201 (54%), Positives = 144/201 (71%)
Frame = +2
Query: 53 NDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELK 232
+D+ E TA+K+ ++ T EN NED + +F +L +V L +AC+ L
Sbjct: 45 SDSEEDATAEKKKV--LKSKSKSTVSTQNENTNEDESFE--SFSELNLVPELIQACKNLN 100
Query: 233 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRE 412
+ KP+ IQ +AIP AL G DIIGLA+TGSGKT AFA+PIL L + + Y+A IL PTRE
Sbjct: 101 YSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQEPYYACILAPTRE 160
Query: 413 LAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGF 592
LA QI E F++LG+ +GV+ IVGGM+M+ QA L +KPHIIIATPGRL+DHLENTKGF
Sbjct: 161 LAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGF 220
Query: 593 NLRPLKYLVMDEADRILNMDF 655
+LR LK+LVMDEADR+L+M+F
Sbjct: 221 SLRKLKFLVMDEADRLLDMEF 241
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 206 bits (503), Expect = 4e-52
Identities = 101/193 (52%), Positives = 137/193 (70%)
Frame = +2
Query: 77 ADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQ 256
++KE + +Q S + T + + T DL V L E+ + LK+ +P+ IQ
Sbjct: 68 SNKEDLSTKKDQSSASSSSSTSSSSSPPSVQSFTEFDL--VPELLESIQSLKYTQPTPIQ 125
Query: 257 KEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQ 436
AIP AL GKDI+G+AETGSGKT AFA+PILQ L Q Y+AL+L PTRELAFQI E
Sbjct: 126 AAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPYYALVLAPTRELAFQIKET 185
Query: 437 FEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYL 616
F+ALG+S+G++ I+GGM M+ QA L +KPH+IIATPGRL+DHLE+TKGF+L+ L+YL
Sbjct: 186 FDALGSSMGLRSVCIIGGMSMMEQARDLMRKPHVIIATPGRLIDHLEHTKGFSLKKLQYL 245
Query: 617 VMDEADRILNMDF 655
VMDE DR++++D+
Sbjct: 246 VMDEVDRMIDLDY 258
>UniRef50_Q49K88 Cluster: DEAD box RNA helicase; n=1; Toxoplasma
gondii|Rep: DEAD box RNA helicase - Toxoplasma gondii
Length = 479
Score = 202 bits (494), Expect = 4e-51
Identities = 91/161 (56%), Positives = 121/161 (75%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF LG+ LC + L WK P+ IQ E +P AL G+DII LAETGSGKT AF LPILQ
Sbjct: 52 TFASLGLCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQ 111
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
LL+ QR++ALIL PTREL QIS+Q A+G ++GV +VGG+D QA+ L+KKPH
Sbjct: 112 RLLQRTQRFYALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPH 171
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+++ +PGR+VDHL+ TKGF+L+ +K LV+DEADR+L++DF+
Sbjct: 172 VVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFD 212
>UniRef50_Q9Y6V7 Cluster: Probable ATP-dependent RNA helicase DDX49;
n=34; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX49 - Homo sapiens (Human)
Length = 483
Score = 192 bits (468), Expect = 6e-48
Identities = 89/155 (57%), Positives = 117/155 (75%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F +LG+ L E C +L K+P+ +Q IP L G+D +G A+TGSGKT AF LPILQ
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQK 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
L E+P F L+LTPTRELA+QI+EQF LG +G+K +IVGGMDMVAQAL LS+KPH+
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHV 123
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRIL 643
+IATPGRL DHL ++ F+++ +++LVMDEADR+L
Sbjct: 124 VIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLL 158
>UniRef50_UPI000155CE2F Cluster: PREDICTED: similar to R27090_2;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED: similar to
R27090_2 - Ornithorhynchus anatinus
Length = 332
Score = 189 bits (460), Expect = 6e-47
Identities = 85/155 (54%), Positives = 117/155 (75%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F LG+ L E C++L ++P+ +Q+ +P L G+D +G A+TGSGKT AF LPILQ
Sbjct: 4 FGALGLAPWLVEQCQQLGLRQPTPVQQSCVPAILEGRDCMGCAKTGSGKTAAFVLPILQK 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
L E+P F L+LTPTRELA+QI+EQF LG +G+K ++VGGMDMV QAL LS+KPH+
Sbjct: 64 LSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIVVGGMDMVTQALDLSRKPHV 123
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRIL 643
+IATPGRL DHL ++ F+++ +++LVMDEADR+L
Sbjct: 124 VIATPGRLADHLRSSSTFSIKKIRFLVMDEADRLL 158
>UniRef50_Q55BR9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 508
Score = 189 bits (460), Expect = 6e-47
Identities = 91/161 (56%), Positives = 116/161 (72%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF++LG+ L C++L +K PS IQ IP L G+DII A+TGSGKT +FA+PIL
Sbjct: 5 TFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILN 64
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
L E+P FA+ILTPTRELA QI EQF A+GA + V C+V++GG+D V QAL+L K+PH
Sbjct: 65 QLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPH 124
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
II+ATPGRL HL N L+ K+LV+DEADR+L DFE
Sbjct: 125 IIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFE 165
>UniRef50_Q4Q1N9 Cluster: DEAD box RNA helicase, putative; n=5;
Trypanosomatidae|Rep: DEAD box RNA helicase, putative -
Leishmania major
Length = 527
Score = 183 bits (445), Expect = 4e-45
Identities = 86/171 (50%), Positives = 121/171 (70%), Gaps = 2/171 (1%)
Frame = +2
Query: 152 EDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTG 331
+D E TF+DLG+ LC AC + W+ P++IQ I V G+D+IG+A+TGSGKTG
Sbjct: 46 DDEEFKAKTFQDLGLCQELCAACADAGWQHPTRIQASTITVFAEGRDLIGVAQTGSGKTG 105
Query: 332 AFALPILQALLENPQRYF--ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVA 505
A+ALP++ LL + + L++ PTRELA Q++ QF LG S+G++ A +VGG DMV
Sbjct: 106 AYALPLVNWLLAQRKTPYLSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVE 165
Query: 506 QALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
QA LSK+PH+++ TPGR+ DHL NTKGF L L LV+DEAD++L+M++E
Sbjct: 166 QACELSKRPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMNYE 216
>UniRef50_A7AWS5 Cluster: DEAD/DEAH box helicase and helicase
conserved C-terminal domain containing protein; n=1;
Babesia bovis|Rep: DEAD/DEAH box helicase and helicase
conserved C-terminal domain containing protein - Babesia
bovis
Length = 454
Score = 180 bits (439), Expect = 2e-44
Identities = 83/141 (58%), Positives = 112/141 (79%)
Frame = +2
Query: 236 KKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTREL 415
+ P+ IQ AIP AL G+D+IGLA TGSGKTGAF +P+L LLE+ QR + ++L P+REL
Sbjct: 53 RHPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQRIYCVVLAPSREL 112
Query: 416 AFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFN 595
QI+EQF AL +SI ++ VI+GG+DMV QA L+K+PH+I+A+PGRL DH+ENTKGF+
Sbjct: 113 CEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPHVIVASPGRLADHVENTKGFS 172
Query: 596 LRPLKYLVMDEADRILNMDFE 658
L +K LV+DEADR+L+ DF+
Sbjct: 173 LSTVKKLVIDEADRLLSQDFD 193
>UniRef50_UPI00004987FF Cluster: DEAD/DEAH box helicase; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 432
Score = 167 bits (407), Expect = 2e-40
Identities = 80/174 (45%), Positives = 128/174 (73%), Gaps = 6/174 (3%)
Frame = +2
Query: 152 EDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTG 331
++T + TFKDLG++ + + E L +KKP++IQ+ +IPVAL KDIIG+A+TGSGKT
Sbjct: 2 DNTTPKQKTFKDLGLIPEVLKVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTA 61
Query: 332 AFALPILQALL---ENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDM 499
+F LP++Q LL E + ++ +I+ PTRELA Q+ E + +G ++ G+ ++VGGMD+
Sbjct: 62 SFLLPMVQHLLNVKEKNRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDV 121
Query: 500 VAQALMLSKKPHIIIATPGRLVDHLENTKGF--NLRPLKYLVMDEADRILNMDF 655
+ Q++ L+K+P +I+ TPGR+V H++NTKG ++ +K+LV+DEAD++L MDF
Sbjct: 122 MKQSVQLAKRPQVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLEMDF 175
>UniRef50_Q4N5F8 Cluster: ATP-dependent RNA helicase, putative; n=3;
Piroplasmida|Rep: ATP-dependent RNA helicase, putative -
Theileria parva
Length = 488
Score = 166 bits (403), Expect = 5e-40
Identities = 84/184 (45%), Positives = 127/184 (69%), Gaps = 7/184 (3%)
Frame = +2
Query: 128 QTP--TENVNEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDII 298
+TP T +++E+ + + TF+ LGV + + E C+ L+ KKP+KIQK +P A GK++I
Sbjct: 59 ETPNHTSDIHENNKKKNLETFESLGVPNWIIEICKSLQIKKPTKIQKLCLPSAFKGKNLI 118
Query: 299 GLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAV 478
G +ETG+GKT F PIL +L +NP ++L+LTPTRELAFQIS+QF G ++ +
Sbjct: 119 GCSETGTGKTICFCWPILTSLAKNPYGVYSLVLTPTRELAFQISDQFRIFGVNMNIVVLS 178
Query: 479 IVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPL----KYLVMDEADRILN 646
VGG+D+V+Q++ + K+PH+IIATPGRL + N + NL + KYLV DE+DR+L+
Sbjct: 179 CVGGVDIVSQSIEMEKRPHVIIATPGRLAYQVSNPER-NLSSIFANVKYLVFDESDRLLD 237
Query: 647 MDFE 658
+ F+
Sbjct: 238 ISFQ 241
>UniRef50_Q8L4E9 Cluster: DEAD-box ATP-dependent RNA helicase 36;
n=7; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
36 - Oryza sativa subsp. japonica (Rice)
Length = 501
Score = 166 bits (403), Expect = 5e-40
Identities = 82/191 (42%), Positives = 121/191 (63%), Gaps = 4/191 (2%)
Frame = +2
Query: 98 DETNQDSEVEQTPTENVNEDTEDDKI--TFKDLGVVDVLCEACEELKWKKPSKIQKEAIP 271
D + D TE+ +D + TF +LG+ L + C+ L + P+ +Q+ IP
Sbjct: 50 DLRDSDEAPAAAVTEHAGDDAAAAAVPSTFAELGLSQWLVDVCDSLGMRVPTAVQRRCIP 109
Query: 272 VALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALG 451
AL G+D++G+AETGSGKT AFALPIL L E+P AL L PTRELA Q++EQF ALG
Sbjct: 110 RALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALG 169
Query: 452 ASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFN--LRPLKYLVMD 625
A +G++C +GG D + QA L+++PH+++ATPGR+ + + K+LV+D
Sbjct: 170 APLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLINDDPDLAKVFARTKFLVLD 229
Query: 626 EADRILNMDFE 658
EADR+L+++FE
Sbjct: 230 EADRVLDINFE 240
>UniRef50_Q07886 Cluster: Probable ATP-dependent RNA helicase
Dbp45A; n=5; Endopterygota|Rep: Probable ATP-dependent
RNA helicase Dbp45A - Drosophila melanogaster (Fruit
fly)
Length = 521
Score = 165 bits (402), Expect = 6e-40
Identities = 82/160 (51%), Positives = 110/160 (68%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ LG+ L + +L K + IQ++ IP L G+D IG A+TGSGKT AFALPIL+
Sbjct: 9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILER 68
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
L E P +FAL+LTPT ELA+QISEQF G ++GV+ V+ GG D + ++ L ++PHI
Sbjct: 69 LSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHI 128
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
++A PGRL DHL F+ LKYLV+DEADR+LN DF+
Sbjct: 129 VVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFD 168
>UniRef50_Q7R0K7 Cluster: GLP_154_39979_41331; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_154_39979_41331 - Giardia lamblia
ATCC 50803
Length = 450
Score = 164 bits (399), Expect = 1e-39
Identities = 78/163 (47%), Positives = 114/163 (69%), Gaps = 5/163 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGK--DIIGLAETGSGKTGAFALPIL 352
F+DLGV L +A E + W +P+ IQKE + V K D++G+AETGSGKTGAFA+P L
Sbjct: 3 FRDLGVCPELLDALERIGWLEPTAIQKEMLTVVSHNKACDVVGVAETGSGKTGAFAIPAL 62
Query: 353 QALLE---NPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
Q LLE N + ++L+PTRELA Q F LG G++ +++GG+D++ Q L+
Sbjct: 63 QDLLERGTNVKGVHTVVLSPTRELAVQTFSVFRDLGKDFGLRTGLVIGGVDLMQQRKTLA 122
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMD 652
++PH++I TPGRLVDHL T+GF+L+ L++L++DEAD++L D
Sbjct: 123 QQPHVLICTPGRLVDHLATTEGFSLKSLRFLIIDEADKMLEQD 165
>UniRef50_Q2WF63 Cluster: Putative uncharacterized protein; n=4;
Bilateria|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 561
Score = 164 bits (398), Expect = 2e-39
Identities = 87/192 (45%), Positives = 125/192 (65%), Gaps = 4/192 (2%)
Frame = +2
Query: 80 DKESYGDETNQDSEVEQTPTE-NVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQ 256
++ES G+E ++ + TP ++ED K F LGV + + + ++ K + +Q
Sbjct: 58 EEESEGEEGDEFKSSDDTPKPIQISEDNMTTK-KFSQLGVCSWITQQLQTMQIKTATPVQ 116
Query: 257 KEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQ 436
IP L G DI+G A TG+GKT AFA+PILQ L +P +ALILTPTRELAFQI+EQ
Sbjct: 117 AACIPKILEGSDILGCARTGTGKTLAFAIPILQKLSVDPYGIYALILTPTRELAFQIAEQ 176
Query: 437 FEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLE---NTKGFNLRPL 607
F ALG I +KC+VIVGG ++ QA LS++PH+++ATPGRL D +E +T + +
Sbjct: 177 FTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGRLADLIESDPDTIAKVFKKI 236
Query: 608 KYLVMDEADRIL 643
++ V+DEADR+L
Sbjct: 237 QFFVLDEADRML 248
>UniRef50_Q01EH4 Cluster: Ddx49 Ddx49-related DEAD box helicase
superfamily II protein; n=2; Ostreococcus|Rep: Ddx49
Ddx49-related DEAD box helicase superfamily II protein -
Ostreococcus tauri
Length = 419
Score = 161 bits (392), Expect = 1e-38
Identities = 79/163 (48%), Positives = 110/163 (67%), Gaps = 3/163 (1%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF +LG+ +V+ + + + ++ PS +Q IP L GKD+IG+A TGSGKT AFALPI+
Sbjct: 3 TFDELGLCNVVLKILKRVHFRSPSDVQSTCIPQILAGKDVIGIANTGSGKTAAFALPIVD 62
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
L +P FAL L+PTRELA QI++QF GA G+ C VI GG D++ QA LS++P+
Sbjct: 63 MLSRDPYGIFALCLSPTRELANQIADQFTVFGAGTGLNCMVITGGEDLIQQATALSRRPN 122
Query: 536 IIIATPGRLVDHL---ENTKGFNLRPLKYLVMDEADRILNMDF 655
I++ATPGRL +H NT + LK L++DEADR+L+ F
Sbjct: 123 IVVATPGRLFEHFMHSSNTVQY-FSKLKCLILDEADRLLDSSF 164
>UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 643
Score = 160 bits (389), Expect = 2e-38
Identities = 85/210 (40%), Positives = 131/210 (62%), Gaps = 7/210 (3%)
Frame = +2
Query: 50 NNDNLEKMTADK---ESYGDETNQDSEVEQTPTENVNED--TEDDKITFKDLGVVDVLCE 214
+ND + KM +K ES ++ + +++ Q + + E + K T++DLG++ L +
Sbjct: 144 SNDKVLKMAKEKLDNESEHEDDDMGTQINQNANKKLKEQKLNKKKKKTWQDLGLIKPLLK 203
Query: 215 ACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF--A 388
A EE++++ P+ IQ AIP AL GKD++ + TGSGKT AF +PILQ +P + A
Sbjct: 204 AVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQKFYRSPFTNYSKA 263
Query: 389 LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVD 568
LI+TPTRELAFQI E F L ++ +++G M Q L P +IIATPGRL+D
Sbjct: 264 LIVTPTRELAFQIYEVFTKLNKYTKLRACLVIGQSAMQKQEAELRGNPEVIIATPGRLID 323
Query: 569 HLENTKGFNLRPLKYLVMDEADRILNMDFE 658
HL+N++ +L L+ L+ DEAD++L++ FE
Sbjct: 324 HLQNSRSIDLDNLEVLIFDEADKLLDLGFE 353
>UniRef50_Q9ZRZ8 Cluster: DEAD-box ATP-dependent RNA helicase 28;
n=5; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 28 - Arabidopsis thaliana (Mouse-ear cress)
Length = 789
Score = 157 bits (382), Expect = 2e-37
Identities = 80/163 (49%), Positives = 105/163 (64%), Gaps = 3/163 (1%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF +L + L ACE L +KKP+ IQ IP+AL G+D+ A TGSGKT AFALP L+
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 356 ALLENPQRYFA---LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
LL P+R FA LILTPTRELA QI + L +KC +IVGG+ + Q ++L
Sbjct: 228 RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 287
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
P I++ATPGR++DHL N+ +L L L++DEADR+L F
Sbjct: 288 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGF 330
>UniRef50_Q4PEX7 Cluster: ATP-dependent RNA helicase DBP8; n=1;
Ustilago maydis|Rep: ATP-dependent RNA helicase DBP8 -
Ustilago maydis (Smut fungus)
Length = 602
Score = 157 bits (381), Expect = 2e-37
Identities = 81/166 (48%), Positives = 116/166 (69%), Gaps = 5/166 (3%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F +G+ +L + L+ K P+ IQ IP L G+D++G A+TGSGKT FALPIL
Sbjct: 110 SFSSIGISPMLIRSLASLQIKVPTPIQSLTIPSVLEGRDLVGGAQTGSGKTLCFALPILN 169
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEAL--GASIGVKCAVIVGGMDMVAQALMLSK- 526
L+++ FA++LTPTREL Q+ EQF A+ GA +G++CA+++GGMDM+ QA L+
Sbjct: 170 KLIKDMVGGFAVVLTPTRELGVQLHEQFVAVGEGARMGLRCALVLGGMDMMKQASELANL 229
Query: 527 KPHIIIATPGRLVDHLENTKG--FNLRPLKYLVMDEADRILNMDFE 658
+PH+I+ATPGRLVDHL + G + LR K+LV+DEADR+L F+
Sbjct: 230 RPHVIVATPGRLVDHLRSGGGEEWGLRRCKFLVLDEADRLLTDTFK 275
>UniRef50_Q7QP86 Cluster: GLP_397_1016_18; n=1; Giardia lamblia ATCC
50803|Rep: GLP_397_1016_18 - Giardia lamblia ATCC 50803
Length = 332
Score = 157 bits (380), Expect = 3e-37
Identities = 78/164 (47%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Frame = +2
Query: 170 KITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPI 349
++TF LGV +L + + P+ IQ++++P + G+D G+A TGSGKT FALPI
Sbjct: 60 EVTFSSLGVSPMLAQLLNQYTITVPTDIQQKSLPYTMQGRDFCGIARTGSGKTLCFALPI 119
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
LQ L ++P FAL+LTPTRELA QI +Q A G +G++ ++GG D V Q+ +L +
Sbjct: 120 LQELSQDPYGIFALVLTPTRELALQIEQQMNAYGNPLGIQAQSLIGGKDSVEQSAILDSR 179
Query: 530 PHIIIATPGRLVDHLENTKG-FNLRPLKYLVMDEADRILNMDFE 658
PHI+IATPGRL LE+ N R +KYLV+DEADR+L D E
Sbjct: 180 PHILIATPGRLAYMLESAAAQRNFRRMKYLVLDEADRLLCGDPE 223
>UniRef50_A4S6M9 Cluster: Predicted protein; n=3; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 755
Score = 156 bits (378), Expect = 5e-37
Identities = 80/193 (41%), Positives = 112/193 (58%), Gaps = 4/193 (2%)
Frame = +2
Query: 89 SYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAI 268
S D ++D E+ + DT D F +L + L ACE L +KKP+ IQ I
Sbjct: 120 SESDSESEDGFQERAVVKGAKGDTTFDAKAFDELHLSRPLTRACEALGYKKPTPIQAAVI 179
Query: 269 PVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFA----LILTPTRELAFQISEQ 436
P+A+ G+D+ G A TGSGKT AF LP L+ +L R A L+L PTRELA Q+ +
Sbjct: 180 PIAMTGRDVCGRAVTGSGKTAAFMLPQLERMLHRGPRPAAATHVLVLVPTRELAVQVHQM 239
Query: 437 FEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYL 616
E+L ++ ++VGG+ QA L +P I++ATPGR++DH+ NT F L L L
Sbjct: 240 TESLAQFTTIRAVLVVGGLSANVQAAALRTRPEIVVATPGRVIDHVRNTHSFGLEDLATL 299
Query: 617 VMDEADRILNMDF 655
++DEADR+L M F
Sbjct: 300 ILDEADRLLEMGF 312
>UniRef50_P38719 Cluster: ATP-dependent RNA helicase DBP8; n=14;
Ascomycota|Rep: ATP-dependent RNA helicase DBP8 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 431
Score = 155 bits (376), Expect = 9e-37
Identities = 85/163 (52%), Positives = 109/163 (66%), Gaps = 4/163 (2%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
FK LG+ L E+ +K +P+ IQK IP L G+D IG A+TGSGKT AFA P+L
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
E+P F ++LTPTRELA QI+EQF ALG+S+ ++ +VIVGG +V QAL L +KPH
Sbjct: 64 WSEDPSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHF 123
Query: 539 IIATPGRLVDHL----ENTKGFNLRPLKYLVMDEADRILNMDF 655
IIATPGRL H+ ++T G L KYLV+DEAD +L F
Sbjct: 124 IIATPGRLAHHIMSSGDDTVG-GLMRAKYLVLDEADILLTSTF 165
>UniRef50_A2DP01 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 402
Score = 154 bits (374), Expect = 2e-36
Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 2/161 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ LGV + A E + W KP+ IQ++ I A+ G+D+ G AETGSGKTGAF +P+L
Sbjct: 3 FQALGVHPDIIAAVESMGWSKPTPIQEKTIKQAIAGEDVSGAAETGSGKTGAFLIPLLHQ 62
Query: 359 LLEN--PQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
LLE P++Y +IL PTREL QI+E + + A + + I GG+D V Q L+K+P
Sbjct: 63 LLEKDRPEKY-GIILAPTRELVIQIAEVAQLMSAKLNITIVPIYGGVDDVEQMAQLAKRP 121
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
HII+ATPGRL + + KGF+L+P++ +V+DEAD++ ++F
Sbjct: 122 HIIVATPGRLAQLIRDAKGFDLKPVRVIVIDEADKMAAVEF 162
>UniRef50_A2EQ41 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 416
Score = 152 bits (369), Expect = 6e-36
Identities = 76/161 (47%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Frame = +2
Query: 164 DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFAL 343
DD TF DLG+ + +AC+ L WK P IQ + IP A+ KDI G AETGSGKTGA+ L
Sbjct: 3 DDSYTFSDLGLCQPMVDACKSLGWKYPMPIQIKTIPPAIEKKDICGTAETGSGKTGAYML 62
Query: 344 PILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
PI + ENP +FAL+ PTRELA QI +G I V+ I+GG+D +Q L
Sbjct: 63 PIFHHMWENPHSFFALVFAPTRELATQIDHVTRDIGKDIKVRVCTIIGGVDEDSQVKALK 122
Query: 524 KKPHIIIATPGRLVDHLENT-KGFNLRPLKYLVMDEADRIL 643
+PH+++ATPGRL + N K L ++ LV DEAD +L
Sbjct: 123 AQPHVVVATPGRLARLIRNNPKVIPLNKVECLVFDEADNML 163
>UniRef50_Q54TJ4 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 783
Score = 152 bits (368), Expect = 8e-36
Identities = 82/207 (39%), Positives = 119/207 (57%), Gaps = 3/207 (1%)
Frame = +2
Query: 47 QNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEE 226
+N + K ++ ++ D + + E++ TF++L + L +A ++
Sbjct: 148 ENEKEINKKQQQQQQQSNKQTTDKIKVLQSNRKLKKIVEEELPTFEELHLSRPLLKAVQK 207
Query: 227 LKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFA---LIL 397
L + +P+ IQ +AIP+AL GKDI+ A TGSGKT AF LP+L+ LL Y A LIL
Sbjct: 208 LGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLIL 267
Query: 398 TPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLE 577
PTRELA Q E L + +IVGG+ AQ + L K P ++IATPGRL+DHL
Sbjct: 268 LPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLL 327
Query: 578 NTKGFNLRPLKYLVMDEADRILNMDFE 658
N G L L+ L++DEADR+L+M F+
Sbjct: 328 NAHGIGLDDLEILILDEADRLLDMGFK 354
>UniRef50_Q5KPU1 Cluster: ATP-dependent RNA helicase DBP8; n=2;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DBP8 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 619
Score = 151 bits (366), Expect = 1e-35
Identities = 79/163 (48%), Positives = 108/163 (66%), Gaps = 2/163 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+TF+ LG+ L A + KKP++IQ + L G+D IG A+TGSGKT AFALPI+
Sbjct: 152 VTFESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIV 211
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
+ + +P +A++LTPTRELA+Q+SEQF +G +G+ A IVGGMDM+ QA L +P
Sbjct: 212 ERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTTATIVGGMDMMKQAQELEARP 271
Query: 533 HIIIATPGRLVDHLEN--TKGFNLRPLKYLVMDEADRILNMDF 655
HII+ATPGRL D L + L ++ LV+DEADR+L F
Sbjct: 272 HIIVATPGRLCDLLRSGGVGPGKLSRVRTLVLDEADRMLTPSF 314
>UniRef50_Q44NG9 Cluster: Helicase, C-terminal:DEAD/DEAH box
helicase, N-terminal; n=9; Bacteroidetes/Chlorobi
group|Rep: Helicase, C-terminal:DEAD/DEAH box helicase,
N-terminal - Chlorobium limicola DSM 245
Length = 499
Score = 150 bits (364), Expect = 3e-35
Identities = 84/206 (40%), Positives = 121/206 (58%), Gaps = 5/206 (2%)
Frame = +2
Query: 53 NDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELK 232
N N + + SYGD + N D D + F+ L +++ + +A EE
Sbjct: 43 NGNRDTGVSRSVSYGDTGKISGSIHPLTYRNQTTD-HTDTMQFRSLAIIEPILQAIEEEG 101
Query: 233 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL-----LENPQRYFALIL 397
++ P+ IQ EAIP+ L G D++G A+TG+GKT AFA+P+LQ L E ++ +LI+
Sbjct: 102 YQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVLQLLNAVKTNEKKRKIRSLII 161
Query: 398 TPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLE 577
TPTRELA QI E F+A G G+ VI GG++ Q L K I+IATPGRL+D L
Sbjct: 162 TPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTASLQKGIDILIATPGRLLD-LM 220
Query: 578 NTKGFNLRPLKYLVMDEADRILNMDF 655
N +LR +++ V+DEADR+L+M F
Sbjct: 221 NQGHLHLRNIEFFVLDEADRMLDMGF 246
>UniRef50_P32892 Cluster: ATP-dependent RNA helicase DRS1; n=13;
Saccharomycetales|Rep: ATP-dependent RNA helicase DRS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 752
Score = 149 bits (362), Expect = 4e-35
Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 10/214 (4%)
Frame = +2
Query: 47 QNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKI------TFKDLGVVDVL 208
+ + E+MT +K DE +++ + E+ + +TE D+ F L + +
Sbjct: 183 EEEEEQEEMTLEKGGKDDEIDEEDDSEEAKADFYAPETEGDEAKKQMYENFNSLSLSRPV 242
Query: 209 CEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFA 388
+ L + KPS IQ IP+ALLGKDII A TGSGKT AF +PI++ LL P + +
Sbjct: 243 LKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIAS 302
Query: 389 ---LILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKKPHIIIATPG 556
++L PTRELA Q+++ + + + G+ + VGG+++ Q ML +P I+IATPG
Sbjct: 303 TRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPG 362
Query: 557 RLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
R +DH+ N+ FN+ ++ LVMDEADR+L F+
Sbjct: 363 RFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQ 396
>UniRef50_Q7RYZ7 Cluster: ATP-dependent RNA helicase dbp-8; n=15;
Pezizomycotina|Rep: ATP-dependent RNA helicase dbp-8 -
Neurospora crassa
Length = 626
Score = 148 bits (359), Expect = 1e-34
Identities = 82/164 (50%), Positives = 104/164 (63%), Gaps = 4/164 (2%)
Frame = +2
Query: 164 DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFAL 343
D TF L V L ++ + K+P+ IQK IP L G+D IG + TGSGKT AFA+
Sbjct: 192 DANTTFDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAV 251
Query: 344 PILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
PILQ NP F +ILTPTRELA QI EQ AL +K +I GG DM QA+ L+
Sbjct: 252 PILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADMRKQAIDLA 311
Query: 524 KKPHIIIATPGRLVDHLENTKG----FNLRPLKYLVMDEADRIL 643
K+PH++IATPGRL DH+ T G LR +K++V+DEADR+L
Sbjct: 312 KRPHLVIATPGRLADHI-RTSGEDTICGLRRVKFIVLDEADRLL 354
>UniRef50_UPI0000498D8E Cluster: ATP-dependent RNA helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: ATP-dependent RNA
helicase - Entamoeba histolytica HM-1:IMSS
Length = 450
Score = 144 bits (350), Expect = 1e-33
Identities = 75/167 (44%), Positives = 107/167 (64%)
Frame = +2
Query: 146 VNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGK 325
+ E D TF LG+ L ++ KP+KIQ+ IP L +++G AETGSGK
Sbjct: 21 IKEVIPSDLNTFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGK 80
Query: 326 TGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVA 505
T AFALPI+ L +P FAL+LTPTRELA QI++QF+A GA I ++ +VGG+D++
Sbjct: 81 TAAFALPIIHHLSTDPYTGFALVLTPTRELASQIADQFKAFGACINIRVVQVVGGVDVIR 140
Query: 506 QALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILN 646
LS PH+IIATPG+LV +++ F+ K+L++DEADR+ +
Sbjct: 141 ILHHLSGSPHVIIATPGKLVSLIDHLP-FSFDSAKFLILDEADRLFD 186
>UniRef50_Q96GQ7 Cluster: Probable ATP-dependent RNA helicase DDX27;
n=34; Bilateria|Rep: Probable ATP-dependent RNA helicase
DDX27 - Homo sapiens (Human)
Length = 796
Score = 144 bits (349), Expect = 2e-33
Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 3/168 (1%)
Frame = +2
Query: 164 DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFAL 343
D+ ++F+D+ + L +A + +K+P+ IQK IPV LLGKDI A TG+GKT AFAL
Sbjct: 215 DENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFAL 274
Query: 344 PILQALLENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQAL 514
P+L+ L+ P++ L+L PTREL Q+ L + + VGG+D+ +Q
Sbjct: 275 PVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEA 334
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
L P I+IATPGRL+DHL N F+L ++ L++DEADR+L+ FE
Sbjct: 335 ALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFE 382
>UniRef50_A6NQG8 Cluster: Putative uncharacterized protein; n=2;
Bacteroidales|Rep: Putative uncharacterized protein -
Bacteroides capillosus ATCC 29799
Length = 636
Score = 144 bits (348), Expect = 2e-33
Identities = 79/164 (48%), Positives = 110/164 (67%), Gaps = 3/164 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+TF++LG+ + +A EL ++KPS IQ++AIP AL G+D++G A+TG+GKT AFA PIL
Sbjct: 1 MTFRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPIL 60
Query: 353 QAL---LENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
Q L + + +LILTPTRELA QI E FEA G + ++ AVI GG+ Q L
Sbjct: 61 QRLGGDIPAGRPIRSLILTPTRELALQIQESFEAYGKHLPLRSAVIFGGVGQQPQVDKLK 120
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
K I++ATPGRL+D L+ +L L+ V+DEADR+L+M F
Sbjct: 121 KGVDILVATPGRLLD-LQGQGFVDLSRLEIFVLDEADRMLDMGF 163
>UniRef50_Q9AW05 Cluster: DEAD box protein; n=1; Guillardia
theta|Rep: DEAD box protein - Guillardia theta
(Cryptomonas phi)
Length = 386
Score = 143 bits (346), Expect = 4e-33
Identities = 67/162 (41%), Positives = 103/162 (63%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+ F +G+ + CE + +KK +K+Q IP L+GKD++ ++TGSGKT A+ LP+L
Sbjct: 2 VKFDQIGICKQISRVCEAVGFKKATKVQVYTIPHFLIGKDLLVYSQTGSGKTLAYILPLL 61
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
Q LL Y +I+ P+REL FQIS FE + ++ A + GG+D Q +M+S P
Sbjct: 62 QKLLYKKNNYLPIIIVPSRELVFQISTTFETISCVFNIRIASLTGGIDPNVQLVMISSNP 121
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
III+TPGRLV+ L+ TK ++ LV+DEAD++++ DF+
Sbjct: 122 DIIISTPGRLVEILKLTKNLEIKFCTDLVLDEADKLIHSDFK 163
>UniRef50_Q8SR63 Cluster: ATP-dependent rRNA helicase RRP3; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent rRNA
helicase RRP3 - Encephalitozoon cuniculi
Length = 400
Score = 143 bits (346), Expect = 4e-33
Identities = 65/159 (40%), Positives = 104/159 (65%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F DL + + L + C+E +P+++Q++ IP L G D+I +++TGSGKT AF LPI+
Sbjct: 3 FGDLRIDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSH 62
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
LL+ + ++ L++ PTREL+ QI+E F A+ G++ ++VGG + QA LSK+PH+
Sbjct: 63 LLQKNRSFYCLVVAPTRELSSQIAECFNMFQAT-GLRVCLLVGGANFNVQANQLSKRPHV 121
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++ TPGR+ +H+ TK F ++ V+DEADR DF
Sbjct: 122 VVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDF 160
>UniRef50_Q81VG0 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=16; cellular organisms|Rep: DEAD-box ATP-dependent RNA
helicase ydbR - Bacillus anthracis
Length = 528
Score = 142 bits (345), Expect = 5e-33
Identities = 70/160 (43%), Positives = 104/160 (65%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF++LG+ D L ++ E + +++ + IQ E IP AL GKDIIG A+TG+GKT AF LP+L
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLD 62
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
+ + + +++ PTRELA Q+ E+ +G V+ I GG D+ Q L K PH
Sbjct: 63 KVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPH 122
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
II+ TPGR++DH+ N K L+ ++ +V+DEAD +LNM F
Sbjct: 123 IIVGTPGRILDHI-NRKTLRLQNVETVVLDEADEMLNMGF 161
>UniRef50_Q5C221 Cluster: SJCHGC04124 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC04124 protein - Schistosoma
japonicum (Blood fluke)
Length = 157
Score = 142 bits (344), Expect = 7e-33
Identities = 74/153 (48%), Positives = 103/153 (67%), Gaps = 8/153 (5%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+ F DLG++ LC C+ +KW P+KIQ ++IP +L GKD++G+AETGSGKT AF LPI+
Sbjct: 1 MAFSDLGLIKELCFVCQRMKWDSPTKIQLKSIPTSLEGKDVVGIAETGSGKTAAFLLPII 60
Query: 353 QALLENPQRY-FALILTPTRELAFQISEQFEALG------ASIGVKCAVIVGGMDMVAQA 511
Q ++ Q FALIL PTRELA Q++ + E LG ++ ++VGG D+V QA
Sbjct: 61 QHWIKCGQPIGFALILAPTRELAQQLANEAERLGQYKSEELEFHLQVILLVGGEDVVDQA 120
Query: 512 LMLS-KKPHIIIATPGRLVDHLENTKGFNLRPL 607
L L+ +K H I+ATPGRLVDHL+ + F + L
Sbjct: 121 LKLAWRKHHFIVATPGRLVDHLKQSPNFAAQQL 153
>UniRef50_Q389T9 Cluster: ATP-dependent DEAD/H RNA helicase,
putative; n=3; Trypanosoma|Rep: ATP-dependent DEAD/H RNA
helicase, putative - Trypanosoma brucei
Length = 520
Score = 142 bits (344), Expect = 7e-33
Identities = 77/164 (46%), Positives = 105/164 (64%), Gaps = 4/164 (2%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ LGV L + C + P+ IQK IP L GK ++G A TGSGKT AF LP+LQ
Sbjct: 4 FEALGVHQWLSKQCAYMALHHPTPIQKLCIPSILAGKCVVGGAATGSGKTAAFVLPLLQI 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
L E+P FAL+LTP+RELA+QI +QF ALGA + ++ A+ +GG+ Q +L +PH+
Sbjct: 64 LAEDPYGVFALVLTPSRELAYQILDQFVALGAPLHIRAALAIGGVPHEQQVSVLHGRPHV 123
Query: 539 IIATPGRLVDHL----ENTKGFNLRPLKYLVMDEADRILNMDFE 658
++ATPGRL L E K F+ L++LV+DEADR+ D E
Sbjct: 124 VVATPGRLKFLLGTFPEARKAFS--HLRFLVLDEADRLTTDDME 165
>UniRef50_Q64VR8 Cluster: ATP-dependent RNA helicase DeaD; n=14;
Bacteria|Rep: ATP-dependent RNA helicase DeaD -
Bacteroides fragilis
Length = 427
Score = 142 bits (343), Expect = 9e-33
Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+TF++L +++ + +A + + P+ IQ+++IP+ L GKD++G A+TG+GKT AF++PIL
Sbjct: 1 MTFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPIL 60
Query: 353 QALLENPQR--YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
Q L + R AL+LTPTRELA QI E FEA G G+K AVI GG+ Q L
Sbjct: 61 QKLYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRS 120
Query: 527 KPHIIIATPGRLVDHLENTKGF-NLRPLKYLVMDEADRILNMDF 655
I++ATPGRL+D + ++GF +L L + V+DEADR+L+M F
Sbjct: 121 GIQILVATPGRLLDLI--SQGFISLSSLDFFVLDEADRMLDMGF 162
>UniRef50_Q7A4G0 Cluster: Probable DEAD-box ATP-dependent RNA
helicase SA1885; n=13; Staphylococcus|Rep: Probable
DEAD-box ATP-dependent RNA helicase SA1885 -
Staphylococcus aureus (strain N315)
Length = 506
Score = 141 bits (341), Expect = 2e-32
Identities = 68/159 (42%), Positives = 103/159 (64%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
FK+LG+ D ++ E + +K+P+ IQK++IP AL G DI+G A+TG+GKTGAF +P+++
Sbjct: 4 FKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEK 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
++ Q +LIL PTRELA Q++EQ GV+ + GGM + Q L K P I
Sbjct: 64 VV-GKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQI 122
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++ TPGR++DHL N + + L++DEAD ++NM F
Sbjct: 123 VVGTPGRVIDHL-NRRTLKTDGIHTLILDEADEMMNMGF 160
>UniRef50_A0T1H5 Cluster: SF2-family helicase; n=6; Plasmodium|Rep:
SF2-family helicase - Plasmodium falciparum
Length = 490
Score = 140 bits (340), Expect = 2e-32
Identities = 75/176 (42%), Positives = 108/176 (61%), Gaps = 3/176 (1%)
Frame = +2
Query: 140 ENVNE-DTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 316
E +N + + ITF++LGV D L + + + P+KIQ+ +P+ + GK++IG +ETG
Sbjct: 58 EQINSYSDQSNNITFEELGVEDWLIKISKSVHILYPTKIQQLCLPLIIQGKNVIGSSETG 117
Query: 317 SGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMD 496
SGKT + ILQ L +N F+LIL PTREL FQI EQF G+ IGV +GG
Sbjct: 118 SGKTICYCWSILQELNKNVYGIFSLILLPTRELVFQIIEQFHLYGSKIGVMILSCIGGFS 177
Query: 497 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFN--LRPLKYLVMDEADRILNMDFE 658
++ Q + KPHII+ TPGR+ D LE++ + L++LV+DEAD +L FE
Sbjct: 178 LIEQRKSVMTKPHIIVGTPGRISDILESSIDIQNCFKRLRFLVLDEADLLLQKCFE 233
>UniRef50_Q4V836 Cluster: MGC114699 protein; n=9; Deuterostomia|Rep:
MGC114699 protein - Xenopus laevis (African clawed frog)
Length = 758
Score = 140 bits (339), Expect = 3e-32
Identities = 71/168 (42%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Frame = +2
Query: 164 DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFAL 343
D+ +TF+D+ + L +A + + +P+ IQK IPV LLGKDI A TG+GKT AF L
Sbjct: 178 DESLTFQDMNLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFML 237
Query: 344 PILQALLENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQAL 514
P+L+ L+ P+ L+L PTREL Q+ L V + VGG+D+ Q
Sbjct: 238 PVLERLIYKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEA 297
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
L P ++IATPGRL+DHL N F+L ++ L++DEADR+L+ FE
Sbjct: 298 ALRSGPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFE 345
>UniRef50_A3I1F5 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Algoriphagus sp. PR1|Rep: DEAD/DEAH box helicase-like
protein - Algoriphagus sp. PR1
Length = 399
Score = 140 bits (338), Expect = 4e-32
Identities = 68/162 (41%), Positives = 107/162 (66%)
Frame = +2
Query: 170 KITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPI 349
K +F L + V+ E ++ + IQ+++I L G+D++G++ TGSGKTGAF +PI
Sbjct: 54 KTSFASLSLDSVMMRNLSEKGYENMTNIQEQSIEALLEGRDLLGISNTGSGKTGAFLIPI 113
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
++ L+NP ++ ALI+TPTRELA QI ++F++L + + A +GG ++ +LS+K
Sbjct: 114 IEHALKNPGQFTALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTNINTDMKVLSRK 173
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
H+I+ TPGRL+D L N K L +K LV+DE DR+L+M F
Sbjct: 174 LHVIVGTPGRLLD-LTNRKLLKLNQVKTLVLDEFDRMLDMGF 214
>UniRef50_A7HG33 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Cystobacterineae|Rep: DEAD/DEAH box helicase domain
protein - Anaeromyxobacter sp. Fw109-5
Length = 455
Score = 139 bits (337), Expect = 5e-32
Identities = 77/161 (47%), Positives = 102/161 (63%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F +L + A ++ P+ IQ +AIP AL GKD+IG A TG+GKT AF LP++
Sbjct: 5 SFAELHLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPLID 64
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
L P AL+L PTRELA QI E+ E G + V+ AVI+GG+ M QA L +K
Sbjct: 65 RLAGKPGTR-ALVLAPTRELALQIGEELERFGHARRVRGAVIIGGVGMAQQAEALRQKRE 123
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
I+IATPGRLVDHLE L ++ LV+DEADR+L+M F+
Sbjct: 124 IVIATPGRLVDHLEQGNA-RLDGIEALVLDEADRMLDMGFK 163
>UniRef50_Q67NW1 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase -
Symbiobacterium thermophilum
Length = 526
Score = 138 bits (335), Expect = 8e-32
Identities = 67/164 (40%), Positives = 107/164 (65%)
Frame = +2
Query: 164 DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFAL 343
+ K+TF+DL + + + +A +++ +++PS IQ +AIP L GKD+IG A+TG+GKT AF +
Sbjct: 3 ETKLTFRDLALSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGV 62
Query: 344 PILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
PI++ L+ + AL+LTPTRELA Q++E+ +G VK I GG + Q L
Sbjct: 63 PIVERLVPGQRAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLR 122
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++I TPGR++DHL + +L ++ +V+DEAD +L+M F
Sbjct: 123 FGVDVVIGTPGRILDHLGRST-LDLSQVRMVVLDEADEMLDMGF 165
>UniRef50_Q9PGP6 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Xylella
fastidiosa
Length = 614
Score = 138 bits (333), Expect = 1e-31
Identities = 70/162 (43%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+ F DLG+ D + +A ++ ++ PS IQ IP L G+D++G A+TG+GKT AFALP+L
Sbjct: 15 LLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLL 74
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKK 529
+ N + L+L PTRELA Q++E F+ ASI G + + GG Q L +
Sbjct: 75 TRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRG 134
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
H+I+ TPGR++DHLE +L LK LV+DEAD +L M F
Sbjct: 135 VHVIVGTPGRVIDHLERGT-LDLSELKTLVLDEADEMLRMGF 175
>UniRef50_Q22MC1 Cluster: Type III restriction enzyme, res subunit
family protein; n=1; Tetrahymena thermophila SB210|Rep:
Type III restriction enzyme, res subunit family protein
- Tetrahymena thermophila SB210
Length = 440
Score = 137 bits (332), Expect = 2e-31
Identities = 68/156 (43%), Positives = 102/156 (65%), Gaps = 2/156 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F LG+ + + C+++ ++ P+KIQ+ AIP L + +I AETGSGKT FA PILQ
Sbjct: 4 FAKLGLDSWIQKTCDKVGYQNPTKIQELAIPPLLRKQHVIANAETGSGKTATFAFPILQD 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
L ++P FA++LT RELA QISEQF G+S+ ++ + +VGG+D Q L + PHI
Sbjct: 64 LAKDPFGVFAIVLTANRELAMQISEQFTIFGSSLNLRVSTLVGGVDFNKQLSELERIPHI 123
Query: 539 IIATPGRLVDHLENTKGFN--LRPLKYLVMDEADRI 640
++ TPGR +D ++ + + +KYLV+DEADR+
Sbjct: 124 VVGTPGRTLDMIDKSPVLKEYIENVKYLVLDEADRL 159
>UniRef50_Q0BSI7 Cluster: ATP-dependent RNA helicase; n=12;
Alphaproteobacteria|Rep: ATP-dependent RNA helicase -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 763
Score = 137 bits (331), Expect = 2e-31
Identities = 78/188 (41%), Positives = 116/188 (61%), Gaps = 3/188 (1%)
Frame = +2
Query: 101 ETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVAL 280
ET Q + E T + V + DD+ F DLG+ + + A E+ + P+ IQ +AIPV L
Sbjct: 200 ETIQPAPTEDT-VQAVAPEEVDDRPLFADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVL 258
Query: 281 LGKDIIGLAETGSGKTGAFALPILQALLENPQRY---FALILTPTRELAFQISEQFEALG 451
+G+D++G A+TG+GKT +F LP++ L + R +LIL PTRELA Q++E F G
Sbjct: 259 MGRDVLGCAQTGTGKTASFTLPMMDILSDRRARARMPRSLILEPTRELALQVAENFVKYG 318
Query: 452 ASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEA 631
+ + A+++GG M Q +LSK ++IATPGRL+D L + G L + LV+DEA
Sbjct: 319 QYLKLNHALLIGGESMNDQRDVLSKGVDVLIATPGRLID-LFDRGGLLLTDTRILVIDEA 377
Query: 632 DRILNMDF 655
DR+L+M F
Sbjct: 378 DRMLDMGF 385
>UniRef50_A0CZH3 Cluster: Chromosome undetermined scaffold_32, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_32,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 431
Score = 137 bits (331), Expect = 2e-31
Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 2/157 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F++LG+ L + C ++ +K+P IQ +IP L GK+++ ++TGSGKT AF+ PILQ
Sbjct: 9 FEELGLDQWLLKLCWKIDYKEPRPIQVLSIPPLLQGKNVLISSQTGSGKTAAFSFPILQT 68
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
L ++P FA+ILT RELA QI+EQ + GAS+ ++ A+++GG+ Q +L + PHI
Sbjct: 69 LSQDPYGIFAIILTANRELAVQIAEQIQIFGASVNLRLALLIGGLSSSKQVKLLGQIPHI 128
Query: 539 IIATPGRLVDHLENTKGFN--LRPLKYLVMDEADRIL 643
I+ TPGR + L F ++ +KY ++DE DR+L
Sbjct: 129 IVGTPGRCAELLSIDVNFQKYIKNVKYFILDEVDRLL 165
>UniRef50_Q5BF42 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized protein
- Emericella nidulans (Aspergillus nidulans)
Length = 1676
Score = 137 bits (331), Expect = 2e-31
Identities = 80/207 (38%), Positives = 113/207 (54%), Gaps = 6/207 (2%)
Frame = +2
Query: 53 NDNLEKMTADKESYGD-ETNQDSEVEQTPTENVNED--TEDDKITFKDLGVVDVLCEACE 223
+D + +D ES D E + P E +ED T K +F++ + +
Sbjct: 747 DDEASEPDSDAESEVDAEEEAKRKAFFAPEEKTDEDAATNSAKRSFQEFNLSRPILRGLA 806
Query: 224 ELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRY---FALI 394
+ + P+ IQ++ IPVALLGKDI+G A TGSGKT AF +PIL+ LL P++ I
Sbjct: 807 AVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAI 866
Query: 395 LTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHL 574
L PTRELA Q L + +VGG + Q +L K+P +IIATPGR +DH+
Sbjct: 867 LMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHM 926
Query: 575 ENTKGFNLRPLKYLVMDEADRILNMDF 655
N+ F + L+ LV+DEADR+L F
Sbjct: 927 RNSASFTVDTLEILVLDEADRMLEDGF 953
>UniRef50_Q89UH0 Cluster: Dead-box ATP-dependent RNA helicase; n=23;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - Bradyrhizobium japonicum
Length = 530
Score = 136 bits (330), Expect = 3e-31
Identities = 69/165 (41%), Positives = 106/165 (64%), Gaps = 5/165 (3%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F+D G+ + + A E + P+ IQ + IP AL G+D++G+A+TG+GKT +FALPIL
Sbjct: 17 SFQDFGLAEPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76
Query: 356 ALLEN-----PQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
LLE+ P+ L+L+PTREL+ QI + F A G I + + +GG+ M Q L
Sbjct: 77 RLLEHRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSL 136
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ +++ATPGRL+D L + G L +++LV+DEADR+L+M F
Sbjct: 137 MQGVEVLVATPGRLLD-LVQSNGLKLGSVEFLVLDEADRMLDMGF 180
>UniRef50_Q5CKB1 Cluster: ATP-dependent RNA helicase; n=2;
Cryptosporidium|Rep: ATP-dependent RNA helicase -
Cryptosporidium hominis
Length = 499
Score = 136 bits (330), Expect = 3e-31
Identities = 70/165 (42%), Positives = 106/165 (64%), Gaps = 5/165 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F +LG+ + + C+ LK + P+ IQ ++IP L G++++G A TGSGKT + LP+LQ
Sbjct: 3 FLNLGLHKWVQDTCDSLKIQTPTAIQSKSIPYILKGRNVVGNAPTGSGKTLCYCLPMLQI 62
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS-KKPH 535
L E+P F L+L P+REL++Q+ +QF+ G + C V+ GG D Q +L+ K+PH
Sbjct: 63 LAEDPFSVFGLVLVPSRELSYQVLDQFQVFGNKVNANCQVLTGGFDESEQIHILNQKRPH 122
Query: 536 IIIATPGRLVDHLENTKGFN----LRPLKYLVMDEADRILNMDFE 658
I+I TPGRL + + G N LR L++LV+DEADR+L+ E
Sbjct: 123 ILIGTPGRL-SSIISYPGSNISDLLRNLRFLVLDEADRLLSESLE 166
>UniRef50_A6QYH1 Cluster: 2-isopropylmalate synthase; n=4;
Ascomycota|Rep: 2-isopropylmalate synthase - Ajellomyces
capsulatus NAm1
Length = 1466
Score = 136 bits (330), Expect = 3e-31
Identities = 82/207 (39%), Positives = 118/207 (57%), Gaps = 10/207 (4%)
Frame = +2
Query: 65 EKMTADKESYGDETNQDSEVEQ-----TPTE--NVNEDTEDDKITFKDLGVVDVLCEACE 223
E +T+D S GDE+ +E+E+ P E + N D + K +F+ + +
Sbjct: 264 EDITSDDGS-GDESEDAAEIEKQKSFFAPEEKPSANGDLKSAK-SFQAFSLSRPILRGLT 321
Query: 224 ELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRY---FALI 394
+ + P+ IQ++ IPVALLGKD++G A TGSGKTGAF +PIL+ LL P++ I
Sbjct: 322 SVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLYRPRKVPTSRVAI 381
Query: 395 LTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHL 574
L PTRELA Q L + +VGG + Q +L K+P +IIATPGR +DH+
Sbjct: 382 LMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHM 441
Query: 575 ENTKGFNLRPLKYLVMDEADRILNMDF 655
N+ F + L+ LV+DEADR+L F
Sbjct: 442 RNSASFTVDTLEILVLDEADRMLEDGF 468
>UniRef50_P0C2N7 Cluster: ATP-dependent RNA helicase DRS1; n=2;
Chaetomium globosum|Rep: ATP-dependent RNA helicase DRS1
- Chaetomium globosum (Soil fungus)
Length = 795
Score = 136 bits (330), Expect = 3e-31
Identities = 73/207 (35%), Positives = 113/207 (54%), Gaps = 3/207 (1%)
Frame = +2
Query: 44 PQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACE 223
P + + E D E +E + E P E N + +F+ + + +
Sbjct: 233 PVQHPDDEASEDDDEEDAEEEARRKEFFAAPEETENVGKKGGLSSFQGMSLSRPILRGLT 292
Query: 224 ELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRY---FALI 394
+ + KP+ IQ + IP+AL+GKD++G A TGSGKT AF +PIL+ LL P++ ++
Sbjct: 293 SVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVV 352
Query: 395 LTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHL 574
LTPTRELA Q L + +K + VGG+ + Q L +P ++IATPGR +DH+
Sbjct: 353 LTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLRPDVVIATPGRFIDHM 412
Query: 575 ENTKGFNLRPLKYLVMDEADRILNMDF 655
N+ F + ++ LV+DEADR+L F
Sbjct: 413 RNSASFAVETVEILVLDEADRMLEDGF 439
>UniRef50_Q7VFA9 Cluster: ATP-dependent RNA helicase DeaD; n=6;
Helicobacteraceae|Rep: ATP-dependent RNA helicase DeaD -
Helicobacter hepaticus
Length = 530
Score = 136 bits (328), Expect = 6e-31
Identities = 77/199 (38%), Positives = 114/199 (57%)
Frame = +2
Query: 59 NLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWK 238
N++ D S ++ + V T + + + D F G+ D + + E +
Sbjct: 9 NVKVKRMDNASLIQQSEESPSV--TIKQGLKSKHKQDTQGFDVFGLKDFVLKGIREAGFS 66
Query: 239 KPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELA 418
PS +Q ++IP+ L GKD+I A+TG+GKT AFA+PIL L N ALI+TPTRELA
Sbjct: 67 TPSPVQSQSIPIILQGKDLIAQAQTGTGKTAAFAIPILNTLNRNKD-IEALIITPTRELA 125
Query: 419 FQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNL 598
QISE+ LG +K + GG + Q +L KKP +IATPGRL+DHL+N + +
Sbjct: 126 MQISEEILKLGRFGRIKTICMYGGQSIKRQCDLLEKKPKAMIATPGRLLDHLQNGRIAHF 185
Query: 599 RPLKYLVMDEADRILNMDF 655
P + +V+DE+D +L+M F
Sbjct: 186 SP-QIVVLDESDEMLDMGF 203
>UniRef50_Q5L3G9 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=7; Bacteria|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Geobacillus kaustophilus
Length = 467
Score = 135 bits (327), Expect = 8e-31
Identities = 66/160 (41%), Positives = 102/160 (63%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF++LG+ + +A E + +++ + IQ + IP++L KD+IG A+TG+GKT AF +PI++
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVE 62
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
+ AL++ PTRELA Q+SE+ +GA V+ I GG D+ Q L K PH
Sbjct: 63 KVNVKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPH 122
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+I+ TPGR++DH+ N L + +V+DEAD +LNM F
Sbjct: 123 VIVGTPGRIIDHI-NRGTLRLEHVHTVVLDEADEMLNMGF 161
>UniRef50_Q09903 Cluster: ATP-dependent RNA helicase drs1; n=1;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase drs1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 754
Score = 135 bits (327), Expect = 8e-31
Identities = 67/163 (41%), Positives = 102/163 (62%), Gaps = 3/163 (1%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F+ + + + + L ++ P++IQ + IP+ALLGKDI+G A TGSGKT AF +PIL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 356 ALLENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
LL P++ LIL PTRELA Q + + + + +GG+ + Q L K
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+P I+IATPGR +DH+ N++GF + ++ +VMDEADR+L F
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGF 422
>UniRef50_A2DFG9 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 441
Score = 135 bits (326), Expect = 1e-30
Identities = 64/158 (40%), Positives = 102/158 (64%), Gaps = 4/158 (2%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F LG + + + C+E+ KP+ +Q+ + + G + I +++TG+GKT AFALPI+
Sbjct: 5 FTSLGCPEFIYQTCKEIGISKPTAVQQACVKQIITGHNCIVISQTGTGKTAAFALPIIST 64
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
L ++P +AL+++PTRELA QI +QF+ G + I+GG+ + QA L K PHI
Sbjct: 65 LSKDPYGIYALVISPTRELAQQICQQFKIFGRGMNADICPIIGGLAITDQASALEKNPHI 124
Query: 539 IIATPGRLVDHLEN-TKG---FNLRPLKYLVMDEADRI 640
++ATPGR++ HL + +KG F+ L+YLV+DE DR+
Sbjct: 125 VVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDRL 162
>UniRef50_Q8D563 Cluster: Superfamily II DNA and RNA helicase; n=13;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 412
Score = 134 bits (325), Expect = 1e-30
Identities = 70/141 (49%), Positives = 94/141 (66%)
Frame = +2
Query: 233 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRE 412
+KKP+ IQ AIP L G+D++ LA TGSGKT A+ LP+L+ L NP++ ALIL P RE
Sbjct: 20 FKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVNPEQK-ALILVPIRE 78
Query: 413 LAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGF 592
LA Q+SE +G ++G+ + GG+D Q L+ PHI++AT GRLVD N G
Sbjct: 79 LATQVSEAINQVGQALGLNAVCLCGGVDKEQQLQALATNPHILVATTGRLVDLANN--GL 136
Query: 593 NLRPLKYLVMDEADRILNMDF 655
+L + YLV+DEADR+LNM F
Sbjct: 137 DLSNIHYLVLDEADRLLNMGF 157
>UniRef50_Q08Q14 Cluster: HeliCase, c-terminal:dead/deah box
helicase, n-terminal; n=3; Bacteria|Rep: HeliCase,
c-terminal:dead/deah box helicase, n-terminal -
Stigmatella aurantiaca DW4/3-1
Length = 608
Score = 134 bits (325), Expect = 1e-30
Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Frame = +2
Query: 131 TPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAE 310
T V E + D TF+ LG++ L EA L +++P+ IQ+ A+P L GKD++G+A
Sbjct: 23 TSPSTVKETSAADN-TFESLGLLPPLVEALSALGYEEPTPIQRAALPPLLEGKDLLGIAA 81
Query: 311 TGSGKTGAFALPILQALLENPQRYF---ALILTPTRELAFQISEQFEALGASIGVKCAVI 481
TG+GKT AF+LP+LQ + F AL+L PTRELA Q++E G +G+ +
Sbjct: 82 TGTGKTAAFSLPLLQRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPL 141
Query: 482 VGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
GG + Q +L + +++ATPGR +DHL+ K L ++ +V+DEAD +L+M F
Sbjct: 142 YGGQVISQQLRVLKRGVDVVVATPGRALDHLQR-KTLKLEQVRVVVLDEADEMLDMGF 198
>UniRef50_A4BET4 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Reinekea sp. MED297|Rep: DEAD/DEAH box helicase-like
protein - Reinekea sp. MED297
Length = 579
Score = 134 bits (325), Expect = 1e-30
Identities = 69/164 (42%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Frame = +2
Query: 167 DKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALP 346
+ +TF DLG+ VL + + L ++ P+ IQ +AI L G D++GLA+TG+GKT AF+LP
Sbjct: 3 ESLTFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLP 62
Query: 347 ILQALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLS 523
+L + + AL+L PTRELA Q++E F+ + I GG DM Q L
Sbjct: 63 LLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLRALK 122
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ P +I+ TPGR++DHL +L LK+LV+DEAD +L M F
Sbjct: 123 QNPQVIVGTPGRVMDHLRRGT-LDLSDLKHLVLDEADEMLRMGF 165
>UniRef50_UPI00015B6038 Cluster: PREDICTED: similar to DEAD box
ATP-dependent RNA helicase; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to DEAD box
ATP-dependent RNA helicase - Nasonia vitripennis
Length = 836
Score = 134 bits (323), Expect = 2e-30
Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 3/167 (1%)
Frame = +2
Query: 164 DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFAL 343
D TF ++ + L +A + + P+ IQ IPVAL+G+DI G A TG+GKT A+ L
Sbjct: 151 DTLATFYNMNLSRPLLKAVTSMNFVNPTPIQAATIPVALMGRDICGCAATGTGKTAAYML 210
Query: 344 PILQALLENPQRYFA---LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQAL 514
P L+ LL P L+L PTREL Q+ + + L V+ + VGG+D+ Q
Sbjct: 211 PTLERLLYRPLDGAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVEVGLSVGGLDVKVQES 270
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+L K P I+IATPGRL+DHL NT F+L ++ L++DEADR+L+ F
Sbjct: 271 VLRKNPDIVIATPGRLIDHLANTPTFSLDTIEVLILDEADRMLDEYF 317
>UniRef50_Q0AVQ9 Cluster: ATP-dependent RNA helicase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
ATP-dependent RNA helicase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 530
Score = 134 bits (323), Expect = 2e-30
Identities = 65/159 (40%), Positives = 104/159 (65%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F +G+ L + +E ++KP+ IQ ++IP+A+ G D++G A+TG+GKT +F +PIL
Sbjct: 6 FYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPILNR 65
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
+++ + AL+L PTRELA Q++E+ +L + ++ I GG + Q L + P I
Sbjct: 66 VIKG-EGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLRSLRRNPEI 124
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I+ TPGRL+DH+ N +L PLKY+V+DEAD +L+M F
Sbjct: 125 IVGTPGRLMDHM-NRGTISLSPLKYVVLDEADEMLDMGF 162
>UniRef50_A0C321 Cluster: Chromosome undetermined scaffold_146,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_146,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 564
Score = 134 bits (323), Expect = 2e-30
Identities = 78/205 (38%), Positives = 115/205 (56%), Gaps = 8/205 (3%)
Frame = +2
Query: 68 KMTADKESYGDETNQDSEVEQTPTENVNEDTE-DDKI-----TFKDLGVVDVLCEACEEL 229
K+ E + +E Q E + P +++ ++ + D KI F L + L +AC +
Sbjct: 77 KIRKQNEQFYEEPEQVEE--EDPQQDLQQEQQLDSKIFAIDTEFHQLKLNKALVKACHDQ 134
Query: 230 KWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL--LENPQRYFALILTP 403
+ P+ +Q + IP+ + GKD++ + TGSGKT AF LPI+Q L+N Q ALI+ P
Sbjct: 135 GYTHPTNVQAKIIPIIMNGKDVLASSCTGSGKTAAFLLPIMQRFGNLKNLQYSKALIILP 194
Query: 404 TRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENT 583
TRELA Q E FE L A+++G + + Q L K P IIIATPGR VD L N+
Sbjct: 195 TRELALQCFEMFEKLNKYANCTAALVIGAVPIQQQETELRKYPDIIIATPGRTVDLLTNS 254
Query: 584 KGFNLRPLKYLVMDEADRILNMDFE 658
++ ++ LV DEADR++ M FE
Sbjct: 255 SSLEIQNIEILVFDEADRLMEMGFE 279
>UniRef50_P0C2N8 Cluster: ATP-dependent RNA helicase drs-1; n=16;
Fungi/Metazoa group|Rep: ATP-dependent RNA helicase
drs-1 - Neurospora crassa
Length = 829
Score = 134 bits (323), Expect = 2e-30
Identities = 69/195 (35%), Positives = 110/195 (56%), Gaps = 3/195 (1%)
Frame = +2
Query: 80 DKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQK 259
D+E +E + P E + + +F+++ + + + + KP+ IQ
Sbjct: 262 DEEGIDEEEEAKMKEFFAPEEENQPKKKGEMSSFQEMSLSRPILRGLTSVGFTKPTPIQA 321
Query: 260 EAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRY---FALILTPTRELAFQIS 430
+ IP++L+GKD++G A TGSGKT AF +PIL+ LL P++ +ILTPTRELA Q
Sbjct: 322 KTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCH 381
Query: 431 EQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLK 610
L + +K + VGG+ + Q L +P ++IATPGR +DH+ N+ F + ++
Sbjct: 382 AVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIE 441
Query: 611 YLVMDEADRILNMDF 655
LV+DEADR+L F
Sbjct: 442 ILVLDEADRMLEDGF 456
>UniRef50_A6CFZ8 Cluster: ATP-dependent RNA helicase; n=1;
Planctomyces maris DSM 8797|Rep: ATP-dependent RNA
helicase - Planctomyces maris DSM 8797
Length = 445
Score = 133 bits (322), Expect = 3e-30
Identities = 72/165 (43%), Positives = 103/165 (62%), Gaps = 5/165 (3%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF++L ++ + +A E +K P+ IQ + IP AL G+D++G A+TG+GKT A ALPIL
Sbjct: 3 TFQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPILN 62
Query: 356 ALLEN-----PQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
L +N P AL+L PTRELA QI + F+A G + ++ +I GG+ Q L
Sbjct: 63 QLGKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQVKAL 122
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ HI++ATPGRL+D L N L L+ V+DEADR+L+M F
Sbjct: 123 KRGAHILVATPGRLLD-LMNQGHIKLNQLEVFVLDEADRMLDMGF 166
>UniRef50_A4FZ46 Cluster: DEAD/DEAH box helicase domain protein;
n=4; Euryarchaeota|Rep: DEAD/DEAH box helicase domain
protein - Methanococcus maripaludis
Length = 541
Score = 133 bits (322), Expect = 3e-30
Identities = 66/161 (40%), Positives = 106/161 (65%), Gaps = 1/161 (0%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGK-DIIGLAETGSGKTGAFALPIL 352
+FK+LG+ D + EA E+ + P+ IQ++AIP+ + GK DI+G A+TG+GKT AF +PIL
Sbjct: 3 SFKNLGLSDEILEALEKKGFTTPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
+ + E+ + ALIL PTRELA Q++E+ +++ S + + GG + Q L +
Sbjct: 63 ETIDESSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRRGV 122
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I++ TPGR++DH+ + + L + Y+V+DEAD +LNM F
Sbjct: 123 QIVVGTPGRILDHI-SRRTIKLENVSYVVLDEADEMLNMGF 162
>UniRef50_Q62IF8 Cluster: ATP-dependent RNA helicase RhlE; n=59;
Betaproteobacteria|Rep: ATP-dependent RNA helicase RhlE
- Burkholderia mallei (Pseudomonas mallei)
Length = 482
Score = 133 bits (321), Expect = 4e-30
Identities = 75/168 (44%), Positives = 107/168 (63%), Gaps = 8/168 (4%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF G+ + +A E + P+ IQ +AIPV L G+D++G A+TG+GKT +F+LPI+Q
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 356 ALL------ENPQRY--FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQA 511
LL +P R+ ALILTPTRELA Q++ A ++ AV+ GG+DM Q
Sbjct: 72 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131
Query: 512 LMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L + I+IATPGRL+DH++ K NL ++ LV+DEADR+L+M F
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQ-KTANLGQVQILVLDEADRMLDMGF 178
>UniRef50_Q4FSS4 Cluster: Possible ATP-dependent DEAD/DEAH box
RNA-helicase; n=4; Gammaproteobacteria|Rep: Possible
ATP-dependent DEAD/DEAH box RNA-helicase - Psychrobacter
arcticum
Length = 567
Score = 133 bits (321), Expect = 4e-30
Identities = 77/193 (39%), Positives = 110/193 (56%), Gaps = 7/193 (3%)
Frame = +2
Query: 98 DETNQDSEVEQTPTEN---VNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAI 268
+ T+ + T T N + T+++K+TF DL + + A E + P+ IQ EAI
Sbjct: 16 ESTDTPNTTANTDTNNEAATTDATDENKVTFTDLNIAKPILSALERSGYTHPTPIQAEAI 75
Query: 269 PVALLGKDIIGLAETGSGKTGAFALPILQAL---LENPQRYFALILTPTRELAFQISEQF 439
P AL G+D++ A+TGSGKT AF +P+L L + ALILTPTRELA Q+ +
Sbjct: 76 PFALQGRDLLLSAQTGSGKTAAFVIPVLDRLSRATSFDKLTKALILTPTRELAQQVHDSV 135
Query: 440 EALGASI-GVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYL 616
+ G+ C +VGG Q L K +I+ATPGRL+DH+ N +L L+ L
Sbjct: 136 RTYSKDMRGLFCVPLVGGAPYNGQITALKKGVQVIVATPGRLLDHI-NAGRVDLSSLEIL 194
Query: 617 VMDEADRILNMDF 655
V+DEADR+L+M F
Sbjct: 195 VLDEADRMLDMGF 207
>UniRef50_Q0LVA0 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=7; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 542
Score = 133 bits (321), Expect = 4e-30
Identities = 71/164 (43%), Positives = 106/164 (64%), Gaps = 5/164 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F DLG+ L +A + + P+ IQ +AIP+ + G+D++G+A+TG+GKT AFALPIL
Sbjct: 67 FTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHR 126
Query: 359 LLEN----PQRYF-ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
L E+ P+R F L+L+PTRELA QI+E F G +G+ A I GG+ Q L+
Sbjct: 127 LAEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALA 186
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ATPGRL+DHL K +L ++ V+DEAD++L++ F
Sbjct: 187 AGVDVVVATPGRLMDHL-GEKSAHLNGVEIFVLDEADQMLDLGF 229
>UniRef50_Q7JQN4 Cluster: LD15481p; n=7; Endopterygota|Rep: LD15481p
- Drosophila melanogaster (Fruit fly)
Length = 782
Score = 133 bits (321), Expect = 4e-30
Identities = 82/209 (39%), Positives = 120/209 (57%), Gaps = 8/209 (3%)
Frame = +2
Query: 53 NDNLEKMTADKESYGDETNQDSEVEQTPTENVN-EDTED--DKIT-FKDLGVVDVLCEAC 220
+DNL ++ KES + E E+ E + DT + ++IT F + + L A
Sbjct: 114 HDNL-RLREKKESKKKKKKAGEEDEEDEGEKMQFADTVEANEQITSFYQMNLSRPLMRAI 172
Query: 221 EELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFA---- 388
L + P+ IQ IPVALLG+DI G A TG+GKT A+ LP L+ LL P A
Sbjct: 173 GVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRV 232
Query: 389 LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVD 568
L+L PTREL Q+ + + L + + +GG+D+ AQ +L + P I+IATPGRL+D
Sbjct: 233 LVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLID 292
Query: 569 HLENTKGFNLRPLKYLVMDEADRILNMDF 655
H++NT F L ++ L++DEADR+L+ F
Sbjct: 293 HIKNTPSFTLDSIEVLILDEADRMLDEYF 321
>UniRef50_Q4QJG6 Cluster: ATP-dependent RNA helicase, putative; n=3;
Leishmania|Rep: ATP-dependent RNA helicase, putative -
Leishmania major
Length = 625
Score = 133 bits (321), Expect = 4e-30
Identities = 77/164 (46%), Positives = 100/164 (60%), Gaps = 6/164 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ LG+ L E C + + P+ IQ + IP L G+ ++G A TGSGKT AFALPILQ
Sbjct: 4 FQRLGIQRWLSEQCTYMALETPTPIQCKCIPAILAGRHVVGGAATGSGKTAAFALPILQT 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
L + FAL+LTP+RELA+QI +QF A GA + V+ + VGG+ Q L +PHI
Sbjct: 64 LAADAYGVFALVLTPSRELAYQIIDQFIAFGAPLRVRTMLAVGGVPTETQVDALKARPHI 123
Query: 539 IIATPGRLVDHL------ENTKGFNLRPLKYLVMDEADRILNMD 652
+ ATPGRL HL E K F L+YLV+DEADR+ D
Sbjct: 124 VAATPGRL-RHLLEVFAPEVQKAF--AHLRYLVLDEADRLTEGD 164
>UniRef50_Q8EZ11 Cluster: ATP-dependent RNA helicase; n=4;
Leptospira|Rep: ATP-dependent RNA helicase - Leptospira
interrogans
Length = 521
Score = 132 bits (320), Expect = 5e-30
Identities = 74/167 (44%), Positives = 102/167 (61%), Gaps = 1/167 (0%)
Frame = +2
Query: 158 TEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAF 337
T K+ F +L + + A E+ +++ S IQ EAIPV L GKDIIG A+TG+GKT AF
Sbjct: 4 TSMKKLKFSELNLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAF 63
Query: 338 ALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIG-VKCAVIVGGMDMVAQAL 514
A+P ++ L + ALIL PTREL Q+SEQF L G + I GG ++ Q
Sbjct: 64 AIPTIELLEVESKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLR 123
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L K P I+IATPGR++DH+ +L +K +V+DEAD +L+M F
Sbjct: 124 ALRKNPQIVIATPGRMMDHMRR-GSIHLDEIKIVVLDEADEMLDMGF 169
>UniRef50_Q5FUQ9 Cluster: ATP-dependent RNA helicase; n=11; cellular
organisms|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 793
Score = 132 bits (320), Expect = 5e-30
Identities = 79/189 (41%), Positives = 116/189 (61%), Gaps = 3/189 (1%)
Frame = +2
Query: 98 DETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVA 277
+ET + V +T V ED D + F DLG+ + + A EEL ++ P+ IQ +AIP
Sbjct: 269 EETVEAPAVVETVV--VAEDVSD-RPRFADLGLSEPIMRAIEELGYEHPTPIQAQAIPEV 325
Query: 278 LLGKDIIGLAETGSGKTGAFALPILQALLENPQRY---FALILTPTRELAFQISEQFEAL 448
L G D++G+A+TG+GKT +F LP+LQ L + R +LIL PTRELA Q++E F+
Sbjct: 326 LKGHDVLGVAQTGTGKTASFTLPMLQKLAGSRARARMPRSLILEPTRELALQVAENFKLY 385
Query: 449 GASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDE 628
G + + A+++GG M Q +L++ ++IATPGRL+D L G L LV+DE
Sbjct: 386 GKYLRLTHALLIGGESMAEQRDVLNRGVDVLIATPGRLLD-LFGRGGLLLTQTSTLVIDE 444
Query: 629 ADRILNMDF 655
ADR+L+M F
Sbjct: 445 ADRMLDMGF 453
>UniRef50_Q24I45 Cluster: DEAD/DEAH box helicase family protein;
n=2; Tetrahymena thermophila|Rep: DEAD/DEAH box helicase
family protein - Tetrahymena thermophila SB210
Length = 713
Score = 132 bits (320), Expect = 5e-30
Identities = 74/170 (43%), Positives = 101/170 (59%), Gaps = 5/170 (2%)
Frame = +2
Query: 164 DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFAL 343
D +++ D + K++KPS IQ A PV L G D+IG+AETGSGKT +F L
Sbjct: 98 DPFLSWTDTHFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLL 157
Query: 344 PIL-----QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQ 508
P + Q ++ L+L PTRELA QI + E G S +KCA I GG D +Q
Sbjct: 158 PSIVHINAQPTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQ 217
Query: 509 ALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+L + ++IATPGRL+D LE ++ LR + YLV+DEADR+L+M FE
Sbjct: 218 RALLQQGVDVVIATPGRLIDFLE-SETTTLRRVTYLVLDEADRMLDMGFE 266
>UniRef50_P96614 Cluster: DEAD-box ATP-dependent RNA helicase ydbR;
n=90; Bacilli|Rep: DEAD-box ATP-dependent RNA helicase
ydbR - Bacillus subtilis
Length = 494
Score = 132 bits (320), Expect = 5e-30
Identities = 65/161 (40%), Positives = 98/161 (60%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
ITF+D + L +A + +++ + IQ + IP+ L KD+IG A+TG+GKT AF +P++
Sbjct: 3 ITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV 62
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
+ + A+++ PTRELA Q+SE+ +G K I GG D+ Q L K P
Sbjct: 63 EKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP 122
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+II+ TPGRL+DH+ N + L + +VMDEAD +LNM F
Sbjct: 123 NIIVGTPGRLLDHI-NRRTIRLNNVNTVVMDEADEMLNMGF 162
>UniRef50_Q9Y7T7 Cluster: Pre-mRNA-splicing ATP-dependent RNA
helicase prp28; n=1; Schizosaccharomyces pombe|Rep:
Pre-mRNA-splicing ATP-dependent RNA helicase prp28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 662
Score = 132 bits (320), Expect = 5e-30
Identities = 71/177 (40%), Positives = 109/177 (61%), Gaps = 8/177 (4%)
Frame = +2
Query: 152 EDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTG 331
+D + +++ G+ + + +++ +K+PS IQ+ AIPV L KD+IG+AETGSGKT
Sbjct: 242 DDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTA 301
Query: 332 AFALPILQALLENPQRY--------FALILTPTRELAFQISEQFEALGASIGVKCAVIVG 487
AF +P++ A+ + P +A++L PTRELA QI + +G +C +VG
Sbjct: 302 AFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVG 361
Query: 488 GMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
G Q+ +S+ HI++ATPGRL+D LE + F L Y+VMDEADR+L+M FE
Sbjct: 362 GHAFEEQSFQMSQGAHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFE 417
>UniRef50_A0Z0M4 Cluster: ATP-dependent RNA helicase; n=1; marine
gamma proteobacterium HTCC2080|Rep: ATP-dependent RNA
helicase - marine gamma proteobacterium HTCC2080
Length = 582
Score = 132 bits (319), Expect = 7e-30
Identities = 72/168 (42%), Positives = 105/168 (62%), Gaps = 1/168 (0%)
Frame = +2
Query: 155 DTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGA 334
DT+ + F LG+ D L E + L ++ + IQ IP+ L G+D++GLA+TG+GKT A
Sbjct: 5 DTQPSR--FNSLGLPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAA 62
Query: 335 FALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQA 511
FALPIL + + AL+L PTRELA Q++E F + G + G++ I GG DM Q
Sbjct: 63 FALPILANIDVKVRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQL 122
Query: 512 LMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L + HI++ATPGRL+DH+E + +L + +V+DEAD +L M F
Sbjct: 123 KSLREGTHIVVATPGRLLDHIER-RSIDLTGINAVVLDEADEMLRMGF 169
>UniRef50_Q5KIK3 Cluster: ATP-dependent RNA helicase DRS1; n=1;
Filobasidiella neoformans|Rep: ATP-dependent RNA
helicase DRS1 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 808
Score = 132 bits (319), Expect = 7e-30
Identities = 88/210 (41%), Positives = 117/210 (55%), Gaps = 18/210 (8%)
Frame = +2
Query: 80 DKESYGDETNQDSEVEQ-TPTENVNED--------TEDDKI--TFKDLGVVDVLCEACEE 226
D+E + + DSE E+ T E +D T D + +F + + L A
Sbjct: 180 DEEGENEVVDSDSESEEETAAEIARKDAFFSSDPTTTDPTLPSSFTAMNLSRPLLRALTS 239
Query: 227 LKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQ-----RYFAL 391
L++ P+ IQ AIP+ALLG+DI+G A TGSGKT AF +PIL+ L + L
Sbjct: 240 LQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVL 299
Query: 392 ILTPTRELAFQISEQFEALGASIG--VKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLV 565
+L PTRELA Q +AL G V+ A++VGG+ + AQA L P I+IATPGRL+
Sbjct: 300 VLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLI 359
Query: 566 DHLENTKGFNLRPLKYLVMDEADRILNMDF 655
DHL NT F L L LV+DEADR+L F
Sbjct: 360 DHLTNTPSFTLSALDVLVIDEADRMLEAGF 389
>UniRef50_Q6MQY6 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 473
Score = 132 bits (318), Expect = 9e-30
Identities = 72/160 (45%), Positives = 102/160 (63%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF+++ + VL A ++K KP+ +Q +AIP +L G DII +A+TGSGKT AFAL +L
Sbjct: 34 TFQEMNLAPVLLPALTKMKISKPTPVQSQAIPASLDGSDIIAIAQTGSGKTLAFALSLLT 93
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
L + P+ LIL P+RE+A QI + F L A + V + +GG QA L K P
Sbjct: 94 TLQKKPEAR-GLILVPSREMAQQIYKVFLELCAEMPVSVCLAIGGTTGSKQANQLKKNPR 152
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+IIATPGR+ DHL K L+ ++ +V+DEADR+L+M F
Sbjct: 153 LIIATPGRMNDHLSGNK-LLLQNVEVIVLDEADRMLDMGF 191
>UniRef50_Q1JTF7 Cluster: ATP-dependent RNA helicase, putative; n=1;
Toxoplasma gondii RH|Rep: ATP-dependent RNA helicase,
putative - Toxoplasma gondii RH
Length = 574
Score = 132 bits (318), Expect = 9e-30
Identities = 81/218 (37%), Positives = 118/218 (54%), Gaps = 15/218 (6%)
Frame = +2
Query: 50 NNDNLEKMTADKESYGDETNQDSEVE---QTPTENVNEDTE--------DDKITFKDLGV 196
N + E+ A+++ E + DSE + Q P EN E ++ TF LGV
Sbjct: 80 NKVSEEEDRAEEDQDAGEEDSDSEEDADDQQPRENEEEPAAAGSPWLGVENAPTFASLGV 139
Query: 197 VDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQ 376
L L PS IQ ++P L GK++ GLA TGSGKT + P+LQ +
Sbjct: 140 PPALIRTAASLHIFHPSPIQVLSLPHTLRGKNVCGLAPTGSGKTLGYCWPLLQRIGRGDG 199
Query: 377 RYF-ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATP 553
F L+L P RELA Q+ +QF G +GV+ +++GG D+V + +L + PHI+IATP
Sbjct: 200 HAFMGLVLLPARELAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQCPHIVIATP 259
Query: 554 GRLVDHLEN---TKGFNLRPLKYLVMDEADRILNMDFE 658
GR+ DH++N L + LV+DEADR+L+ +FE
Sbjct: 260 GRMSDHVQNDPLRMKKRLSLVDVLVLDEADRLLSDEFE 297
>UniRef50_Q31AC4 Cluster: DEAD/DEAH box helicase-like protein; n=7;
Prochlorococcus marinus|Rep: DEAD/DEAH box helicase-like
protein - Prochlorococcus marinus (strain MIT 9312)
Length = 593
Score = 131 bits (317), Expect = 1e-29
Identities = 69/183 (37%), Positives = 109/183 (59%), Gaps = 3/183 (1%)
Frame = +2
Query: 116 SEVEQTPTE-NVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKD 292
++++ P E ++ D E+ F D G + + +K P+ IQK AIP +LG+D
Sbjct: 34 TDIKSQPLEISIGNDNENG---FLDFGFNQSILNSLSNKGYKNPTPIQKAAIPELMLGRD 90
Query: 293 IIGLAETGSGKTGAFALPILQALLENPQ-RYFALILTPTRELAFQISEQFEALGA-SIGV 466
++G A+TG+GKT AFALP+++ L +N + L++TPTRELA Q++E F++ + S
Sbjct: 91 LLGQAQTGTGKTAAFALPLIEKLADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNF 150
Query: 467 KCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILN 646
K I GG D Q L +K +++ TPGR++DH+ F + + LV+DEAD +LN
Sbjct: 151 KTIAIYGGTDYRNQIYALKRKVDVVVGTPGRIMDHIRQGT-FKVNSINCLVLDEADEMLN 209
Query: 647 MDF 655
M F
Sbjct: 210 MGF 212
>UniRef50_Q30SZ2 Cluster: DEAD/DEAH box helicase-like; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: DEAD/DEAH
box helicase-like - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 432
Score = 131 bits (317), Expect = 1e-29
Identities = 68/165 (41%), Positives = 109/165 (66%), Gaps = 4/165 (2%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F+ LGV+ L A ++L ++KP+ IQ AIP+ L D+ A+TG+GKT AF L +L
Sbjct: 1 MSFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGML 60
Query: 353 QALL---ENPQRYF-ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
Q L ++ QR L++ PTREL+ QI E ++ ++G+ AV+VGG D+ +Q +L
Sbjct: 61 QRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKIL 120
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ I+IATPGR+++H++ KG +L ++ V+DEADR+L+M F
Sbjct: 121 KEGVDIVIATPGRVLEHVD--KGLSLSHVEIFVLDEADRMLDMGF 163
>UniRef50_Q21EB3 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Saccharophagus degradans (strain 2-40 / ATCC
43961 / DSM 17024)
Length = 436
Score = 131 bits (317), Expect = 1e-29
Identities = 69/163 (42%), Positives = 102/163 (62%), Gaps = 3/163 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F +LG+ L +A ++L + KP+ +Q + IP L GKDI+ A+TGSGKT AF LP+L
Sbjct: 3 FSELGLHQSLQKALDKLTFTKPTDVQVQTIPAVLAGKDIMVSAKTGSGKTAAFLLPMLHK 62
Query: 359 LLENPQ---RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
L +P+ ALIL PTRELA Q + FE +K +I+GG Q + K
Sbjct: 63 FLNDPRPNTSTRALILLPTRELALQTVKAFEQFAGYTQIKVGLIMGGEAYKHQVATVRKN 122
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
P +++ATPGRLV+H++N + L++LV+DE+DR+L+M F+
Sbjct: 123 PEVLVATPGRLVEHIKN-GNVDFSDLEFLVLDESDRMLDMGFQ 164
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 131 bits (316), Expect = 2e-29
Identities = 75/173 (43%), Positives = 105/173 (60%), Gaps = 5/173 (2%)
Frame = +2
Query: 152 EDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTG 331
E + D F LG+ + +A L + P+ IQ +AIP L KD++GLA+TG+GKT
Sbjct: 96 EQPKSDASAFSKLGLDAEIVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTA 155
Query: 332 AFALPILQALLENP-----QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMD 496
AFALP++Q LL NP + A+IL+PTRELA QI E F + G + + +GG
Sbjct: 156 AFALPLIQQLLMNPIAIKGRSARAIILSPTRELALQIHEAFVSFGKRLPLNFTHAIGGAP 215
Query: 497 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ Q LSK I++ATPGRL D L + KG L K+LV+DEAD++L++ F
Sbjct: 216 IRKQMRDLSKGVDILVATPGRLED-LVDQKGLRLDETKFLVLDEADQMLDIGF 267
>UniRef50_UPI0000499ECF Cluster: DEAD/DEAH box helicase; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DEAD/DEAH box
helicase - Entamoeba histolytica HM-1:IMSS
Length = 542
Score = 130 bits (315), Expect = 2e-29
Identities = 81/214 (37%), Positives = 121/214 (56%), Gaps = 13/214 (6%)
Frame = +2
Query: 56 DNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDK---------ITFKDLGVVDVL 208
+N E+ + E + TN++ E+ Q T++ E+ E K I +K L + + +
Sbjct: 34 ENEEENEEENEEKQERTNKE-EINQNKTKSKEENEEKTKGTTSSFLTDIEYKSLNLSEEI 92
Query: 209 CEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL----LENPQ 376
+A EE + K + IQ +IP+ L+GKDI+ A TGSGKT AF +PI++ L +
Sbjct: 93 QKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIVEILNKIHFQTRN 152
Query: 377 RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPG 556
A+I++PTRELA Q + E + A +I+GG + L K I++ATPG
Sbjct: 153 GTGAIIISPTRELAIQTFDVLEKILAHSERTRTLIIGGSSKKKEEEALKKGASIVVATPG 212
Query: 557 RLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
RL+DH+ NTK F R LK LV+DEADRI+ + FE
Sbjct: 213 RLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFE 246
>UniRef50_Q1FMF9 Cluster: Helicase-like:DbpA, RNA-binding:DEAD/DEAH
box helicase-like; n=1; Clostridium phytofermentans
ISDg|Rep: Helicase-like:DbpA, RNA-binding:DEAD/DEAH box
helicase-like - Clostridium phytofermentans ISDg
Length = 483
Score = 130 bits (315), Expect = 2e-29
Identities = 66/159 (41%), Positives = 101/159 (63%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F + + + +A L + +P+ IQ++ IP+AL GKDII ++TGSGKT AFA+PI ++
Sbjct: 6 FTQYKLCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICES 65
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
++ AL+L PTRELA+Q+ ++ +G VK V+ GG QAL L +K HI
Sbjct: 66 IVWEENLPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPFDKQALTLKQKSHI 125
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++ TPGR++DH E T +KY+++DEAD +L+M F
Sbjct: 126 VVGTPGRVLDHCE-TGTLKCSNVKYVIIDEADLMLDMGF 163
>UniRef50_A7CUH7 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Opitutaceae bacterium TAV2|Rep: DEAD/DEAH box
helicase domain protein - Opitutaceae bacterium TAV2
Length = 536
Score = 130 bits (314), Expect = 3e-29
Identities = 71/175 (40%), Positives = 101/175 (57%)
Frame = +2
Query: 131 TPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAE 310
TP E +DT F LG+ D L A E+ + +P+ IQ +A+P L G+D+ G A+
Sbjct: 124 TPVEIPPQDT-----AFSKLGLNDALAFAVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQ 178
Query: 311 TGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGG 490
TG+GKT AFALPIL L + +R L+L PTRELA Q+ E F+ + V+ GG
Sbjct: 179 TGTGKTAAFALPILHKLGAHERRLRCLVLEPTRELALQVEEAFQKYSKYTDLTATVVYGG 238
Query: 491 MDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ Q L + ++ ATPGRL+DH+E L ++ LV+DE DR+L+M F
Sbjct: 239 VGYGKQREDLQRGVDVVAATPGRLLDHIEQGT-MTLADVEILVLDEVDRMLDMGF 292
>UniRef50_A6TUK6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; Firmicutes|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 484
Score = 130 bits (314), Expect = 3e-29
Identities = 68/163 (41%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Frame = +2
Query: 170 KITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPI 349
K F D + D L ++ L ++ P+K+Q++ IP L KDII ++TGSGKT AFA+PI
Sbjct: 3 KSNFSDYQLSDELLKSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIPI 62
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
Q + + + AL+L PTRELA Q+ E +G +K A + G Q L +K
Sbjct: 63 CQLVDWDENKPQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQK 122
Query: 530 PHIIIATPGRLVDHLENTKG-FNLRPLKYLVMDEADRILNMDF 655
H+++ TPGR++DH+E KG F+ +KYLV+DEAD + NM F
Sbjct: 123 THVVVGTPGRIIDHME--KGTFDTSQIKYLVIDEADEMFNMGF 163
>UniRef50_Q0W8H7 Cluster: ATP-dependent RNA helicase; n=1;
uncultured methanogenic archaeon RC-I|Rep: ATP-dependent
RNA helicase - Uncultured methanogenic archaeon RC-I
Length = 497
Score = 130 bits (314), Expect = 3e-29
Identities = 59/161 (36%), Positives = 102/161 (63%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+ F +L + + A E+ +++ + IQ++AIP+A+ GKD+IG A TG+GKT AF +P++
Sbjct: 2 VKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMV 61
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
+A+ + L++ PTRELA Q++E+ +G G++ I GG D +Q L + P
Sbjct: 62 EAIRPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALEELP 121
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
HI++ TPGRL++H+ + ++ V+DEAD++L+M F
Sbjct: 122 HIVVGTPGRLLEHMRR-EYVRTSDIRIAVLDEADKMLDMGF 161
>UniRef50_P0A9P8 Cluster: Cold-shock DEAD box protein A; n=54;
Gammaproteobacteria|Rep: Cold-shock DEAD box protein A -
Shigella flexneri
Length = 629
Score = 130 bits (314), Expect = 3e-29
Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF DLG+ + EA +L ++KPS IQ E IP L G+D++G+A+TGSGKT AF+LP+LQ
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKKP 532
L + L+L PTRELA Q++E + GV + GG Q L + P
Sbjct: 67 NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I++ TPGRL+DHL+ +L L LV+DEAD +L M F
Sbjct: 127 QIVVGTPGRLLDHLKRGT-LDLSKLSGLVLDEADEMLRMGF 166
>UniRef50_Q95QN2 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 730
Score = 130 bits (313), Expect = 4e-29
Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
+++ G D + +A +E+ + +P+ IQ++AIP+ L +D+IG+AETGSGKT AF LP+L
Sbjct: 303 WEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVW 362
Query: 359 LLENPQRY---------FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQA 511
+ P+ +A+I+ PTRELA QI E+ G +G+K ++GG Q
Sbjct: 363 ITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQG 422
Query: 512 LMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+ L ++IATPGRL+D LEN + L Y+++DEADR+L+M FE
Sbjct: 423 MKLRMGVEVVIATPGRLLDVLEN-RYLLLNQCTYVILDEADRMLDMGFE 470
>UniRef50_Q9BUQ8 Cluster: Probable ATP-dependent RNA helicase DDX23;
n=50; Eumetazoa|Rep: Probable ATP-dependent RNA helicase
DDX23 - Homo sapiens (Human)
Length = 820
Score = 130 bits (313), Expect = 4e-29
Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL- 352
++KD + + E ++ +K+P+ IQ++AIP+ L +DIIG+AETGSGKT AF +P+L
Sbjct: 392 SWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
Query: 353 --------QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQ 508
+ E+ Q +A+IL PTRELA QI E+ G +G++ ++GG+ Q
Sbjct: 452 WITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQ 511
Query: 509 ALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
L I+IATPGRL+D LEN + L Y+V+DEADR+++M FE
Sbjct: 512 GFRLRMGCEIVIATPGRLIDVLEN-RYLVLSRCTYVVLDEADRMIDMGFE 560
>UniRef50_Q8YXJ0 Cluster: ATP-dependent RNA helicase; n=11;
Cyanobacteria|Rep: ATP-dependent RNA helicase - Anabaena
sp. (strain PCC 7120)
Length = 513
Score = 129 bits (312), Expect = 5e-29
Identities = 64/161 (39%), Positives = 99/161 (61%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F +LG+ E E+L + P+ IQ +AIP L G+D++G ++TG+GKT AF+LPIL
Sbjct: 3 LSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL 62
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
+ L + A++LTPTRELA Q+ + + G++ I GG + Q L L +
Sbjct: 63 ERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKRGV 122
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
HI++ TPGR++D LE L +K+ V+DEAD +L+M F
Sbjct: 123 HIVVGTPGRVIDLLER-GNLKLDQVKWFVLDEADEMLSMGF 162
>UniRef50_Q5NZY2 Cluster: ATP-dependent RNA helicase DeaD; n=18;
Bacteria|Rep: ATP-dependent RNA helicase DeaD - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 658
Score = 129 bits (311), Expect = 7e-29
Identities = 71/164 (43%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F L + L +A E+ ++ PS IQ IP L G D++G A+TG+GKT AFALP+L
Sbjct: 45 SFAQLDLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLD 104
Query: 356 AL---LENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLS 523
L ++NPQ L+L PTRELA Q++E F+ ++ G + GG MV Q L+
Sbjct: 105 RLDLAVKNPQ---VLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLA 161
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ H+I+ TPGR++DH+E K NL L LV+DEAD +L M F
Sbjct: 162 RGAHVIVGTPGRVMDHIER-KSLNLDSLTTLVLDEADEMLRMGF 204
>UniRef50_Q5GRS8 Cluster: Superfamily II DNA/RNA helicase; n=4;
Wolbachia|Rep: Superfamily II DNA/RNA helicase -
Wolbachia sp. subsp. Brugia malayi (strain TRS)
Length = 408
Score = 129 bits (311), Expect = 7e-29
Identities = 65/161 (40%), Positives = 103/161 (63%), Gaps = 1/161 (0%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F ++G+ +L +A ++ + P+ +Q +AIP+AL GKDI+G A+TG+GKT AFA+P++
Sbjct: 3 SFYEMGLPLLLAQALDKNSFSVPTPVQAQAIPLALKGKDILGSAQTGTGKTLAFAIPLIA 62
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGV-KCAVIVGGMDMVAQALMLSKKP 532
LL P AL++ PTRELA Q++ + L V K A+++GG + Q L ++P
Sbjct: 63 KLLGEPNASTALVIVPTRELAQQVTNEIGKLLLKNSVLKIALLIGGEPIFRQLNQLQRRP 122
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I+I TPGR++DH+E K + LV+DE DR+ +M F
Sbjct: 123 RIVIGTPGRIIDHIER-KTLITNNVSTLVLDEVDRMFDMGF 162
>UniRef50_Q1MYS3 Cluster: Probable ATP-dependent RNA helicase; n=1;
Oceanobacter sp. RED65|Rep: Probable ATP-dependent RNA
helicase - Oceanobacter sp. RED65
Length = 449
Score = 129 bits (311), Expect = 7e-29
Identities = 69/163 (42%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ + + + E L + K + +Q++ IP AL +D++ A TGSGKT AF +P+LQ
Sbjct: 2 FQSFSLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQH 61
Query: 359 LLENPQRYF---ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
LL + ALIL PTRELA Q+ +Q +AL G++ +I GG + QA + K
Sbjct: 62 LLTHKAPNSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRKN 121
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
P IIIATPGRL+DHL+ K + ++Y ++DEADR+L+M FE
Sbjct: 122 PEIIIATPGRLIDHLKQKKDL-MEDVEYFILDEADRMLDMGFE 163
>UniRef50_A6FEC9 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Moritella sp. PE36|Rep: ATP-dependent RNA
helicase, DEAD box family - Moritella sp. PE36
Length = 460
Score = 129 bits (311), Expect = 7e-29
Identities = 71/165 (43%), Positives = 106/165 (64%), Gaps = 6/165 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+D G+ L + E L +++ +++Q+ AIP+ L G DI+ ++TGSGKT A+ LPILQ
Sbjct: 3 FQDFGIDPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPILQR 62
Query: 359 LLENPQRYF------ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
+L+ QR F A+IL PTRELA Q+ + LG S+ + +I+G Q +L
Sbjct: 63 MLK--QRRFEHRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLL 120
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
K P ++IATPGRL+DH+ K +L L++LV+DEADR+L+M F
Sbjct: 121 RKNPEVLIATPGRLLDHIRE-KSISLEHLEFLVLDEADRMLDMGF 164
>UniRef50_P44586 Cluster: Cold-shock DEAD box protein A homolog;
n=20; Pasteurellaceae|Rep: Cold-shock DEAD box protein A
homolog - Haemophilus influenzae
Length = 613
Score = 129 bits (311), Expect = 7e-29
Identities = 64/164 (39%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Frame = +2
Query: 167 DKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALP 346
DKITF DLG+ + + +A +L ++ PS IQ+ IP L G D++G+A+TGSGKT AFALP
Sbjct: 3 DKITFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALP 62
Query: 347 ILQALLENPQRYFALILTPTRELAFQISEQFEA-LGASIGVKCAVIVGGMDMVAQALMLS 523
+L + + + L++ PTRELA Q+++ E + + G + + GG Q L
Sbjct: 63 LLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALK 122
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ +++ TPGR++DH+ NL L+++V+DEAD +L M F
Sbjct: 123 QGAQVVVGTPGRILDHIRRGT-LNLSELRFIVLDEADEMLRMGF 165
>UniRef50_Q81JK1 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family; n=30; Firmicutes|Rep: ATP-dependent RNA
helicase, DEAD/DEAH box family - Bacillus anthracis
Length = 481
Score = 128 bits (310), Expect = 9e-29
Identities = 68/163 (41%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
Frame = +2
Query: 170 KITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPI 349
K +F + + + A L ++ P+++Q E IPVAL KD++ ++TGSGKT +F +P+
Sbjct: 3 KKSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPL 62
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
+ + + AL+LTPTRELA Q+ E +G +K A I G Q L L +K
Sbjct: 63 CEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQK 122
Query: 530 PHIIIATPGRLVDHLENTKG-FNLRPLKYLVMDEADRILNMDF 655
HI++ TPGR++DH+E KG +L LKYLV+DEAD +LNM F
Sbjct: 123 THIVVGTPGRVLDHIE--KGTLSLERLKYLVIDEADEMLNMGF 163
>UniRef50_Q9SB89 Cluster: DEAD-box ATP-dependent RNA helicase 27;
n=1; Arabidopsis thaliana|Rep: DEAD-box ATP-dependent
RNA helicase 27 - Arabidopsis thaliana (Mouse-ear cress)
Length = 633
Score = 128 bits (310), Expect = 9e-29
Identities = 74/202 (36%), Positives = 117/202 (57%), Gaps = 4/202 (1%)
Frame = +2
Query: 65 EKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKP 244
+K D E+ +E + + E+ E + T TF+ L + D ++ +E+ + +
Sbjct: 121 KKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNK---TFESLSLSDNTYKSIKEMGFARM 177
Query: 245 SKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLE---NPQRYFA-LILTPTRE 412
++IQ +AIP ++G+D++G A TGSGKT AF +P ++ L P+ L++ PTRE
Sbjct: 178 TQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRE 237
Query: 413 LAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGF 592
LA Q + L ++GG +A +L+K ++++ATPGRL+DHLENT GF
Sbjct: 238 LAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGF 297
Query: 593 NLRPLKYLVMDEADRILNMDFE 658
+ LK+LVMDEADRIL +FE
Sbjct: 298 IFKNLKFLVMDEADRILEQNFE 319
>UniRef50_A6VTY7 Cluster: DEAD/DEAH box helicase domain protein;
n=48; root|Rep: DEAD/DEAH box helicase domain protein -
Marinomonas sp. MWYL1
Length = 463
Score = 128 bits (309), Expect = 1e-28
Identities = 70/165 (42%), Positives = 105/165 (63%), Gaps = 4/165 (2%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F LG+ + +A E+ + +PS IQ +AIP L G+D++ A+TG+GKT F LP+L
Sbjct: 5 MSFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLL 64
Query: 353 QALL--ENPQ--RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
+ L EN Q + AL+LTPTRELA Q++E + G + +K V+ GG+ + Q + L
Sbjct: 65 EILSKGENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMMAL 124
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ I+IATPGR++D L N K L+ LV+DEADR+L+M F
Sbjct: 125 RRGADILIATPGRMMD-LYNQKAVRFDKLEVLVLDEADRMLDMGF 168
>UniRef50_P39517 Cluster: ATP-dependent RNA helicase DHH1; n=103;
Eukaryota|Rep: ATP-dependent RNA helicase DHH1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 506
Score = 128 bits (309), Expect = 1e-28
Identities = 66/161 (40%), Positives = 98/161 (60%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF+D + L E ++KPS IQ+EAIPVA+ G+DI+ A+ G+GKT AF +P L+
Sbjct: 47 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 106
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
+ + ALI+ PTRELA Q S+ LG G+ C V GG ++ L L++ H
Sbjct: 107 KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 166
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
I++ TPGR++D L + K +L +MDEAD++L+ DF+
Sbjct: 167 ILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFK 206
>UniRef50_Q5ZT20 Cluster: ATP-dependent RNA helicase; n=4;
Legionella pneumophila|Rep: ATP-dependent RNA helicase -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 589
Score = 128 bits (308), Expect = 2e-28
Identities = 72/161 (44%), Positives = 96/161 (59%), Gaps = 2/161 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F + L +A E++K+ PS IQ + IP+ L G+D I LA+TG+GKT AFALPILQ
Sbjct: 8 FSTFNFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQN 67
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGA-SIGVKCAVIVGGMDMVAQALMLSKKPH 535
L ALIL PTRELA Q++EQFE L V AV+ GG + Q L
Sbjct: 68 LSPEISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSGAQ 127
Query: 536 IIIATPGRLVDHLENTKG-FNLRPLKYLVMDEADRILNMDF 655
+++ TPGR++DH++ KG L LK ++DEAD +L M F
Sbjct: 128 VVVGTPGRILDHID--KGTLLLNNLKTFILDEADEMLRMGF 166
>UniRef50_Q0G0P8 Cluster: Superfamily II DNA and RNA helicase; n=2;
Aurantimonadaceae|Rep: Superfamily II DNA and RNA
helicase - Fulvimarina pelagi HTCC2506
Length = 457
Score = 128 bits (308), Expect = 2e-28
Identities = 69/165 (41%), Positives = 103/165 (62%), Gaps = 5/165 (3%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF G+ + L A L+ P+ IQ+ AIP AL G+D++G+A+TG+GKT AFALP+L
Sbjct: 5 TFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPLLH 64
Query: 356 ALL-----ENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
L+ + ALIL+PTRELA QI+E L + V+ GG+ + Q L
Sbjct: 65 HLMTVGGKPTTRTTKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQIQAL 124
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++ I++ATPGRL+D +E + +LR ++L++DEADR+L+M F
Sbjct: 125 ARGVDILVATPGRLLDLMEQ-RAIDLRETRHLILDEADRMLDMGF 168
>UniRef50_Q4P7Y2 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 568
Score = 128 bits (308), Expect = 2e-28
Identities = 71/169 (42%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
++++ G+ + EE+ +K+PS IQ++AIP+ L +D+IG+AETGSGKT +F +P+L
Sbjct: 268 SWRESGIPASILSTIEEVGYKEPSPIQRQAIPIGLQNRDLIGIAETGSGKTASFLIPLLA 327
Query: 356 ALLENPQ--------RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQA 511
+ + P+ ALIL PTRELA QI + +G++C IVGG DM QA
Sbjct: 328 YISKLPKLDEHTKALGPQALILVPTRELAQQIETETNKFAGRLGLRCVSIVGGRDMNDQA 387
Query: 512 LMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
L I+IATPGRL D +E L Y+VMDEAD++++M FE
Sbjct: 388 YALRDGAEIVIATPGRLKDCIER-HVLVLSQCTYVVMDEADKMVDMGFE 435
>UniRef50_Q6MN50 Cluster: ATP-dependent RNA helicase; n=1;
Bdellovibrio bacteriovorus|Rep: ATP-dependent RNA
helicase - Bdellovibrio bacteriovorus
Length = 656
Score = 127 bits (307), Expect = 2e-28
Identities = 66/161 (40%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG-KDIIGLAETGSGKTGAFALPILQ 355
F+ G+ + A ++ + P+ IQ++A+P+ L G D IGLA TG+GKT AF +P+++
Sbjct: 46 FESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLIE 105
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
+ + AL+L+PTRELA Q++EQ LG GV+ I GG Q + + H
Sbjct: 106 NIDSTVKDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGASYRTQIDGIKRGAH 165
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
I++ATPGRLVD LE K L+ +K +V+DEAD +L+M F+
Sbjct: 166 IVVATPGRLVDFLEQ-KMIKLQSVKTVVLDEADEMLSMGFK 205
>UniRef50_Q725W5 Cluster: ATP-dependent RNA helicase, DEAD/DEAH
family; n=2; Desulfovibrio vulgaris subsp. vulgaris|Rep:
ATP-dependent RNA helicase, DEAD/DEAH family -
Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB8303)
Length = 532
Score = 127 bits (306), Expect = 3e-28
Identities = 68/161 (42%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+FKDL + + L +A EEL + +PS IQ AIP L G+D+IG A+TG+GKT AF LP+LQ
Sbjct: 6 SFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQ 65
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKKP 532
+ + AL+L PTRELA Q++ AL + GV+ + GG + QA L +
Sbjct: 66 RIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALRRGA 125
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ TPGR++DH+ N L ++ V+DEAD +L+M F
Sbjct: 126 QVVVGTPGRILDHI-NRGTLQLGVVRMTVLDEADEMLDMGF 165
>UniRef50_Q3AFI3 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: ATP-dependent RNA helicase, DEAD box family
- Carboxydothermus hydrogenoformans (strain Z-2901 / DSM
6008)
Length = 430
Score = 127 bits (306), Expect = 3e-28
Identities = 63/159 (39%), Positives = 102/159 (64%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
FK LG++ L +A +L ++ P+ IQKEAIP+ L G +++G A TG+GKT A+ LP+LQ
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
++ ++ LI+TPTRELA Q++++ LG + V+ + GG + Q L + +
Sbjct: 64 -IQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEV 122
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I+ TPGR++DH+ K F +K +++DEAD +L+M F
Sbjct: 123 IVGTPGRILDHI-GRKTFPAAEIKIVILDEADEMLDMGF 160
>UniRef50_A0KTC9 Cluster: DEAD/DEAH box helicase domain protein;
n=132; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain ANA-3)
Length = 578
Score = 127 bits (306), Expect = 3e-28
Identities = 69/165 (41%), Positives = 101/165 (61%), Gaps = 4/165 (2%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F LG+ + +A E + PS IQ +AIP L GKD++ A+TG+GKT F LP+L
Sbjct: 1 MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 353 QALLENPQ----RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
+ L + + + AL+LTPTRELA Q+SE E G + ++ AV+ GG+ + Q L
Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ATPGRL+D LE K L+ LV+DEADR+L+M F
Sbjct: 121 RHGVDVLVATPGRLLD-LEQQKAVKFNQLEVLVLDEADRMLDMGF 164
>UniRef50_Q6MR64 Cluster: ATP-dependent RNA helicase; n=5; cellular
organisms|Rep: ATP-dependent RNA helicase - Bdellovibrio
bacteriovorus
Length = 505
Score = 126 bits (305), Expect = 4e-28
Identities = 75/164 (45%), Positives = 101/164 (61%), Gaps = 5/164 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F DL ++ L + +E ++ P+ IQ AIPV L G D++G+A+TG+GKT AF+LPILQ
Sbjct: 6 FTDLPLIAPLQFSLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSLPILQN 65
Query: 359 LLEN-----PQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
L ++ P+ LILTPTRELA QI E EA + +K AVI GG+ Q L
Sbjct: 66 LSKHTRKIEPKSPRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQVRALQ 125
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I+IATPGRL+D L K L ++ V+DEADR+L+M F
Sbjct: 126 GGVDILIATPGRLMD-LHGQKHLKLDRVEIFVLDEADRMLDMGF 168
>UniRef50_A7HKQ8 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Fervidobacterium nodosum Rt17-B1|Rep: DEAD/DEAH box
helicase domain protein - Fervidobacterium nodosum
Rt17-B1
Length = 571
Score = 126 bits (305), Expect = 4e-28
Identities = 69/175 (39%), Positives = 113/175 (64%), Gaps = 2/175 (1%)
Frame = +2
Query: 137 TENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVAL-LGKDIIGLAET 313
T +V ++T++ + F+D G+ + + A ++ ++KP++IQK +P AL KD+I A+T
Sbjct: 7 TGSVLDETKNYE-RFEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQT 65
Query: 314 GSGKTGAFALPILQALLENPQRYF-ALILTPTRELAFQISEQFEALGASIGVKCAVIVGG 490
G+GKT AF +P+L+ + ++ A+I+TPTRELA QI E+ ++L + VK + GG
Sbjct: 66 GTGKTAAFGIPLLERIDFKANKFVKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGG 125
Query: 491 MDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ Q L K I++ TPGR++DHL N +L ++YLV+DEADR+L+M F
Sbjct: 126 QSLEKQFKDLEKGVDIVVGTPGRIIDHL-NRDTLDLSHVEYLVLDEADRMLDMGF 179
>UniRef50_A4B5L7 Cluster: ATP-dependent RNA helicase DbpA; n=3;
Proteobacteria|Rep: ATP-dependent RNA helicase DbpA -
Alteromonas macleodii 'Deep ecotype'
Length = 459
Score = 126 bits (305), Expect = 4e-28
Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 1/162 (0%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
T K L + + +A + + S IQ +++P AL GKD+IG A+TGSGKT F +P L+
Sbjct: 5 TVKQLDINPAITKALDSQGIHQLSPIQAQSLPDALQGKDVIGQAQTGSGKTLCFVIPALE 64
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIG-VKCAVIVGGMDMVAQALMLSKKP 532
+ N A++L PTRELA Q+++Q + IG +K + GG M Q L P
Sbjct: 65 KIEVNDFSTQAIMLCPTRELAEQVAQQCRSAAKDIGNIKVTTLCGGQPMGPQIQSLKHSP 124
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
HII+ TPGR++DH+E + +LR +K V+DEADR+L+M FE
Sbjct: 125 HIIVGTPGRVMDHVEKRR-IDLRNVKLRVLDEADRMLDMGFE 165
>UniRef50_Q7QQ49 Cluster: GLP_139_12217_14094; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_139_12217_14094 - Giardia lamblia
ATCC 50803
Length = 625
Score = 126 bits (305), Expect = 4e-28
Identities = 64/164 (39%), Positives = 102/164 (62%), Gaps = 3/164 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++++ L + L A L WK P+ +Q++ IP+ L G+D + A TGSGKTGAF +P+L
Sbjct: 1 MSWQGLSLSRQLTRAVLRLGWKFPTTVQEKVIPIVLAGRDALVSAVTGSGKTGAFGIPLL 60
Query: 353 QALLENPQRYF---ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
+ ++ + + ALIL+PTRELA Q + + L + +++GG D QA L
Sbjct: 61 ERMILRGRDTYGTTALILSPTRELAAQTAAVLQELAYFTNFRVYLLIGGTDTAKQAAQLR 120
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+P II+ATPGRL+D + NT F+L ++ LV+DE D++L++ F
Sbjct: 121 TEPDIIVATPGRLIDLVRNTVNFSLDTIEVLVLDEGDKMLDIGF 164
>UniRef50_Q8D3Y6 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=8; Gammaproteobacteria|Rep: ATP-dependent RNA
helicase, DEAD box family - Vibrio vulnificus
Length = 447
Score = 126 bits (304), Expect = 5e-28
Identities = 70/165 (42%), Positives = 105/165 (63%), Gaps = 4/165 (2%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+ FKDLG+ + L + + L ++K +KIQ++AIPVA+ GKD++ ++TGSGKT AF LP+L
Sbjct: 5 LQFKDLGLDNRLLKNLKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 64
Query: 353 QALLE----NPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
L+ + + +IL PTRELA Q+ + + + +IVGG + Q L
Sbjct: 65 HKSLKTKALSARDPRGVILAPTRELAKQVYGELRTMLGGLSYDATLIVGGENFNDQVKAL 124
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++ P I+ATPGRL DHLE+ F L L+ LV+DEADR+L++ F
Sbjct: 125 ARYPKFIVATPGRLADHLEHKSVF-LEGLETLVLDEADRMLDLGF 168
>UniRef50_Q8YH70 Cluster: ATP-DEPENDENT RNA HELICASE RHLE; n=10;
Rhizobiales|Rep: ATP-DEPENDENT RNA HELICASE RHLE -
Brucella melitensis
Length = 535
Score = 126 bits (303), Expect = 6e-28
Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 5/173 (2%)
Frame = +2
Query: 152 EDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTG 331
E T+++ F LG+ VL + E +P IQ +AIP L G+DI+G+A+TGSGKT
Sbjct: 80 ELTKENTGGFAALGITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTA 139
Query: 332 AFALPILQALL-----ENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMD 496
AF+LPILQ ++ P+ ALIL PTRELA QI + + S + A+++GG+
Sbjct: 140 AFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVS 199
Query: 497 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++Q ++ ++IATPGRL D + + +L ++LV+DEADR+L+M F
Sbjct: 200 KLSQIKRIAPGIDVLIATPGRLTDLMRDGL-VDLSQTRWLVLDEADRMLDMGF 251
>UniRef50_Q4UBP8 Cluster: RNA helicase, putative; n=4;
Eukaryota|Rep: RNA helicase, putative - Theileria
annulata
Length = 976
Score = 126 bits (303), Expect = 6e-28
Identities = 66/167 (39%), Positives = 99/167 (59%), Gaps = 7/167 (4%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F G+ D + + E+ ++++P IQ + IP + G+D+IG+AETGSGKT AF LP ++
Sbjct: 369 SFSQCGLPDPILKILEKREYERPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPAIR 428
Query: 356 ALLENP-----QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
L+ P L++ PTREL QIS + ++G+K I GG + Q L
Sbjct: 429 HALDQPSLRENDGMIVLVIAPTRELVIQISNESSKFSRAVGLKTLAIYGGAGIGEQLNAL 488
Query: 521 SKKPHIIIATPGRLVDHLENTKG--FNLRPLKYLVMDEADRILNMDF 655
+ I+I TPGRL+D L +KG NLR + +LV+DEADR+ +M F
Sbjct: 489 KRGAEIVIGTPGRLIDVLTLSKGKVTNLRRVTFLVLDEADRMFDMGF 535
>UniRef50_A7RY08 Cluster: Predicted protein; n=2; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 518
Score = 126 bits (303), Expect = 6e-28
Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
I+F G + + + +L++ +P++IQ +A+P+AL G+DIIG+A+TGSGKT AF P L
Sbjct: 106 ISFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPAL 165
Query: 353 QALLENPQRY-----FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 517
+++ P+ LI PTREL QI + G + + + GG + Q+
Sbjct: 166 VHIMDQPELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKA 225
Query: 518 LSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
L + I++ATPGRL+DH++ K NL + YLV DEADR+ +M FE
Sbjct: 226 LQEGAEIVVATPGRLIDHVK-AKATNLHRVTYLVFDEADRMFDMGFE 271
>UniRef50_A2ED04 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 521
Score = 126 bits (303), Expect = 6e-28
Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Frame = +2
Query: 101 ETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVAL 280
E Q +E+ + + E+ +TF++L + + E +E W P+ IQ +IP+ L
Sbjct: 61 EEEQKKYLEKNQIKLLGENIPPVAVTFEELNLPQEIMEVIKENNWTNPTPIQSLSIPIGL 120
Query: 281 LGKDIIGLAETGSGKTGAFALPIL-----QALLENPQRYFALILTPTRELAFQISEQFEA 445
G D++G+A+TGSGKT +F +P L Q + L+L+PTRELA Q E
Sbjct: 121 KGNDMVGIAKTGSGKTASFLIPALMHISAQRKISENDGPIVLVLSPTRELALQTDEVAAQ 180
Query: 446 LGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMD 625
+G K I GG D Q L P I+ ATPGRL+D L++ FN +LV+D
Sbjct: 181 FCVKMGYKHVCIYGGEDRHRQINKLRFHPEIVTATPGRLIDFLQSGV-FNPNRANFLVLD 239
Query: 626 EADRILNMDFE 658
EADR+L+M FE
Sbjct: 240 EADRMLDMGFE 250
>UniRef50_Q9P9G7 Cluster: DEAD-box RNA helicase; n=3;
Methanosarcinaceae|Rep: DEAD-box RNA helicase -
Methanococcoides burtonii
Length = 522
Score = 126 bits (303), Expect = 6e-28
Identities = 70/160 (43%), Positives = 103/160 (64%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+FK LG+ D + + E+ K+++P++IQK AIP+ L GKDIIG A TGSGKT AF I+Q
Sbjct: 3 SFKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGIIQ 62
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
+E AL+LTPTRELA Q+ + ++ A I GG+ + Q L ++
Sbjct: 63 K-IEKGNGIRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQIRQL-ERAD 120
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ATPGRL+DH+E +L ++ LV+DEADR+L+M F
Sbjct: 121 VVVATPGRLLDHIERGT-IDLGDVEILVLDEADRMLDMGF 159
>UniRef50_Q5QVE4 Cluster: ATP-dependent RNA helicase; n=2;
Idiomarina|Rep: ATP-dependent RNA helicase - Idiomarina
loihiensis
Length = 409
Score = 125 bits (302), Expect = 8e-28
Identities = 68/163 (41%), Positives = 106/163 (65%), Gaps = 4/163 (2%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
+++ + D L + + KP+K+Q+++IP AL G+D++ A TG+GKT AF LP LQ
Sbjct: 5 WEEFDLDDRLIAVLRDAELNKPAKVQQQSIPAALDGRDLLISAPTGTGKTLAFLLPALQH 64
Query: 359 LLENPQRYFA----LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
LL+ P++ L+L PTRELA QI EQ + A G+ V+ GG++ +Q +L K
Sbjct: 65 LLDFPRQQPGPARILVLAPTRELAEQIHEQAKQFEAKTGLTSVVVTGGINYGSQLSVLEK 124
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I++ATPGRL+D LE + +NL +++L++DEADR+L+M F
Sbjct: 125 THDILVATPGRLMDLLE-AEQYNLEGIEWLIIDEADRMLDMGF 166
>UniRef50_Q11TW3 Cluster: Possible ATP-dependent RNA helicase; n=5;
Bacteria|Rep: Possible ATP-dependent RNA helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 388
Score = 125 bits (302), Expect = 8e-28
Identities = 71/168 (42%), Positives = 108/168 (64%), Gaps = 6/168 (3%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F LG+ + +A E+ + P IQ++AIP L GKDI+G+A+TGSGKT +F LPIL
Sbjct: 9 MSFATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTASFVLPIL 68
Query: 353 QALLENP---QRYF-ALILTPTRELAFQISEQFEALGASI--GVKCAVIVGGMDMVAQAL 514
Q L P R+ AL+L PTRELA Q+ + F+A ++ +K + GG+ + Q +
Sbjct: 69 QMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGVSINPQMI 128
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
L + I+IATPGRL+D L ++K L ++ LV+DEAD++LN+ F+
Sbjct: 129 QL-QGVEILIATPGRLLD-LVDSKAVYLSDVEVLVLDEADKMLNLGFK 174
>UniRef50_Q11QF9 Cluster: Inducible ATP-independent RNA helicase;
n=1; Cytophaga hutchinsonii ATCC 33406|Rep: Inducible
ATP-independent RNA helicase - Cytophaga hutchinsonii
(strain ATCC 33406 / NCIMB 9469)
Length = 457
Score = 125 bits (302), Expect = 8e-28
Identities = 69/163 (42%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG-KDIIGLAETGSGKTGAFALPI 349
+TF DLG+ L ++ E PS+IQ++AIPV L K+++G+A+TG+GKT AF LP+
Sbjct: 1 MTFSDLGLNAALLQSLSENNISSPSEIQQKAIPVILNSTKNVVGVAQTGTGKTAAFGLPV 60
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSK 526
LQ + + Q+ L+L PTREL Q+++ I + + GG + Q L
Sbjct: 61 LQQINPSLQQTQVLVLVPTRELGQQVAKDLFVFSRYIVRIHTEAVYGGKKIEEQIKKLET 120
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
HI++ATPGRL+D L K NL LKYL++DEAD +LNM F
Sbjct: 121 PKHILVATPGRLLD-LIARKAVNLSNLKYLILDEADEMLNMGF 162
>UniRef50_A5UZK3 Cluster: DEAD/DEAH box helicase domain protein;
n=12; Bacteria|Rep: DEAD/DEAH box helicase domain
protein - Roseiflexus sp. RS-1
Length = 467
Score = 125 bits (302), Expect = 8e-28
Identities = 66/145 (45%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Frame = +2
Query: 224 ELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQ-RYFALILT 400
+L + P+ IQ++ IP AL G+D+IG+A+TG+GKT AF LPILQ L+ P+ R A+I+T
Sbjct: 18 DLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQRLMRGPRGRVRAMIVT 77
Query: 401 PTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLEN 580
PTRELA QI EALG G++ + GG+ Q L + I + PGRL+DHLE
Sbjct: 78 PTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLRRGVEIAVVCPGRLLDHLER 137
Query: 581 TKGFNLRPLKYLVMDEADRILNMDF 655
L L L++DEAD++ +M F
Sbjct: 138 GT-LTLEHLDMLILDEADQMFDMGF 161
>UniRef50_Q9SWV9 Cluster: Ethylene-responsive RNA helicase; n=5;
Eukaryota|Rep: Ethylene-responsive RNA helicase -
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Length = 474
Score = 125 bits (302), Expect = 8e-28
Identities = 72/166 (43%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL- 352
+F D+G D + + E+ + +P+ IQ + P+AL G+D+IG+AETGSGKT A+ LP +
Sbjct: 97 SFHDVGFPDYVLQEIEKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPAIV 156
Query: 353 ----QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
Q +L++ L+L PTRELA QI ++ GAS +K I GG+ Q L
Sbjct: 157 HVNAQPILDHGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDL 216
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
K I+IATPGRL+D LE+ NLR + +V+DEADR+L+M FE
Sbjct: 217 QKGVEIVIATPGRLIDMLESNH-TNLRRVT-IVLDEADRMLDMGFE 260
>UniRef50_Q9LKL6 Cluster: DEAD box protein P68; n=5;
Viridiplantae|Rep: DEAD box protein P68 - Pisum sativum
(Garden pea)
Length = 622
Score = 125 bits (302), Expect = 8e-28
Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 6/149 (4%)
Frame = +2
Query: 230 KWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ-ALLENPQRY----FALI 394
++ +PS IQ +A+P+AL G+D++G AETGSGKT AF +P+LQ L++ P R AL+
Sbjct: 137 EYTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMLQHCLVQPPIRRGDGPLALV 196
Query: 395 LTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 571
L PTRELA QI ++ +A S+ +K ++VGG ++ Q L I +ATPGR +DH
Sbjct: 197 LAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQRSELRAGVEIAVATPGRFIDH 256
Query: 572 LENTKGFNLRPLKYLVMDEADRILNMDFE 658
L+ +L + Y+V+DEADR+L+M FE
Sbjct: 257 LQQ-GNTSLSRISYVVLDEADRMLDMGFE 284
>UniRef50_A5BHG9 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 757
Score = 125 bits (302), Expect = 8e-28
Identities = 75/189 (39%), Positives = 109/189 (57%), Gaps = 9/189 (4%)
Frame = +2
Query: 119 EVEQTPTE-NVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDI 295
EVE T ++N D +D + + + L + K+ KP+ IQ+ AIP+A+ G+D+
Sbjct: 101 EVEDTNGGLSINFDAYEDIPVEAKIHLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDL 160
Query: 296 IGLAETGSGKTGAFALPILQALLENPQRY--------FALILTPTRELAFQISEQFEALG 451
+ A+TGSGKT AF PI+ +L N ALIL+PTREL+ QI E+ +
Sbjct: 161 MACAQTGSGKTAAFCFPIICGILRNQLSRGGARLACPTALILSPTRELSCQIHEEAKKFS 220
Query: 452 ASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEA 631
G+K V GG + Q L + I++ATPGRLVD +E + +LR +KYL +DEA
Sbjct: 221 YKTGLKVVVAYGGAPISQQFRNLERGVDILVATPGRLVDMIERAR-VSLRMIKYLALDEA 279
Query: 632 DRILNMDFE 658
DR+L+M FE
Sbjct: 280 DRMLDMGFE 288
>UniRef50_Q54CD8 Cluster: Putative RNA helicase; n=2; Dictyostelium
discoideum|Rep: Putative RNA helicase - Dictyostelium
discoideum AX4
Length = 1091
Score = 125 bits (302), Expect = 8e-28
Identities = 77/210 (36%), Positives = 118/210 (56%), Gaps = 9/210 (4%)
Frame = +2
Query: 53 NDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDD-----KIT--FKDLGVVDVLC 211
N + + + K + +E + E P + NE E+ K T F+ + + L
Sbjct: 183 NADADNKKSKKSNKKEEIESSEKFESFPMDENNEQEEETTSKKKKKTGGFQSMDLTKNLL 242
Query: 212 EACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQR--YF 385
+A + + P+ IQ+++IP+ L G DI+G+A TGSGKTGAF +P++Q L ++
Sbjct: 243 KAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVR 302
Query: 386 ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLV 565
A+IL+PTRELA Q + + ++ +IVGG M Q L++ P IIIATPGRL+
Sbjct: 303 AVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLM 362
Query: 566 DHLENTKGFNLRPLKYLVMDEADRILNMDF 655
HL T G +L ++Y+V DEADR+ M F
Sbjct: 363 HHLLET-GMSLSKVQYIVFDEADRLFEMGF 391
>UniRef50_Q4JF01 Cluster: Vasa homlogue; n=2; Eukaryota|Rep: Vasa
homlogue - Platynereis dumerilii (Dumeril's clam worm)
Length = 712
Score = 125 bits (302), Expect = 8e-28
Identities = 69/173 (39%), Positives = 102/173 (58%), Gaps = 11/173 (6%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+ F + + + + K+ +P+ IQK AIP+ L GKD++G A+TGSGKT AF LP+L
Sbjct: 270 LNFDQADLSETVRSNVRKAKYDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVL 329
Query: 353 QALLEN-----------PQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDM 499
+++N PQ A+I+ PTREL QI + +S V+ V+ GG +
Sbjct: 330 TGIIKNDLIEGGSGFGGPQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSV 389
Query: 500 VAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
QA L K H+++ TPGRL+D + K NL +KYL++DEADR+L+M FE
Sbjct: 390 GYQARELEKGAHVVVGTPGRLLDFIGKGK-INLSKVKYLILDEADRMLDMGFE 441
>UniRef50_P20448 Cluster: ATP-dependent RNA helicase DBP4; n=13;
Saccharomycetales|Rep: ATP-dependent RNA helicase DBP4 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 770
Score = 125 bits (302), Expect = 8e-28
Identities = 73/194 (37%), Positives = 110/194 (56%), Gaps = 8/194 (4%)
Frame = +2
Query: 101 ETNQDSEVEQTPTENVNEDTEDDKIT----FKDLGVVDVLCEACEELKWKKPSKIQKEAI 268
+T + E E D D KIT FKDL + D + E + K ++IQ ++I
Sbjct: 13 KTLRQKEDEYIENLKTKIDEYDPKITKAKFFKDLPISDPTLKGLRESSFIKLTEIQADSI 72
Query: 269 PVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF----ALILTPTRELAFQISEQ 436
PV+L G D++ A+TGSGKT AF +P+++ L F ALI++PTRELA QI E
Sbjct: 73 PVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAMQIYEV 132
Query: 437 FEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYL 616
+G+ +++GG D+ + +S + +I+I TPGR++ HL+ G N L+ L
Sbjct: 133 LTKIGSHTSFSAGLVIGGKDVKFELERIS-RINILIGTPGRILQHLDQAVGLNTSNLQML 191
Query: 617 VMDEADRILNMDFE 658
V+DEADR L+M F+
Sbjct: 192 VLDEADRCLDMGFK 205
>UniRef50_UPI0000D57716 Cluster: PREDICTED: similar to CG9143-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG9143-PA - Tribolium castaneum
Length = 643
Score = 125 bits (301), Expect = 1e-27
Identities = 71/191 (37%), Positives = 112/191 (58%), Gaps = 11/191 (5%)
Frame = +2
Query: 104 TNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALL 283
+ Q S VE N D + + + G+ D + +A + +P+ IQ ++P A+L
Sbjct: 76 SKQGSSVETRVEINEKIQKSDSYLVWSNFGLPDSIIKALVLQGFNEPTLIQSLSLPAAVL 135
Query: 284 GK-DIIGLAETGSGKTGAFALPILQALLE--------NPQRYFALILTPTRELAFQISEQ 436
G+ DI+G AETGSGKT AF LPI+ +L + ++ +AL+LTPTRELA Q+ +
Sbjct: 136 GRRDIVGAAETGSGKTLAFGLPIVAGILNEKSKVVGNSDKKLYALVLTPTRELAVQVRDH 195
Query: 437 FEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLE--NTKGFNLRPLK 610
+A+ + AV++GGM V Q +LSK+P I++ATPGRL + ++ N + ++
Sbjct: 196 LKAIVKFTDINIAVVLGGMAAVKQERILSKRPEIVVATPGRLWELIQQGNEHLSQINDIR 255
Query: 611 YLVMDEADRIL 643
YL +DE DR+L
Sbjct: 256 YLAIDETDRML 266
>UniRef50_Q7VQL9 Cluster: Cold-shock DEAD-box protein A, inducible
ATP-independent RNA helicase; n=2;
Enterobacteriaceae|Rep: Cold-shock DEAD-box protein A,
inducible ATP-independent RNA helicase - Blochmannia
floridanus
Length = 487
Score = 125 bits (301), Expect = 1e-27
Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 3/167 (1%)
Frame = +2
Query: 164 DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFAL 343
D + +F DLG+ + + + ++ P IQ + IP+ L G D++G+A TGSGKT AF L
Sbjct: 3 DSENSFVDLGLNTYIVDMLSNIGYQAPLPIQTQCIPLLLKGCDLLGMAHTGSGKTAAFLL 62
Query: 344 PILQALLENPQRYF-ALILTPTRELAFQISE--QFEALGASIGVKCAVIVGGMDMVAQAL 514
P+LQ ++ QR+ LI+ PTRELA QI + S + AV+ GG + Q
Sbjct: 63 PLLQN-IDIKQRFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQFN 121
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L K PHIII TPGRL+DHL ++G ++ LK L++DEAD +L M F
Sbjct: 122 DLKKNPHIIIGTPGRLLDHL--SRGLDISKLKTLIIDEADEMLRMGF 166
>UniRef50_Q28T45 Cluster: DEAD/DEAH box helicase-like protein; n=18;
Alphaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Jannaschia sp. (strain CCS1)
Length = 644
Score = 125 bits (301), Expect = 1e-27
Identities = 66/163 (40%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF DL + + +A E ++ P+ IQ AIP AL G+D++G+A+TG+GKT +F LP++
Sbjct: 12 TFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMIT 71
Query: 356 ALLENPQRYF---ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
L R +L+L PTRELA Q++E F+ + + A+++GG+ Q + K
Sbjct: 72 MLARGRARARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQAIDK 131
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++IATPGRL+DH E K L +K +V+DEADR+L+M F
Sbjct: 132 GVDVLIATPGRLLDHFERGK-LILNDVKVMVVDEADRMLDMGF 173
>UniRef50_A2EVI2 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 598
Score = 125 bits (301), Expect = 1e-27
Identities = 67/173 (38%), Positives = 106/173 (61%), Gaps = 5/173 (2%)
Frame = +2
Query: 155 DTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGA 334
D +TF++L + D + + + KW+KP+ IQ +IPVAL G D+IG+A+TGSGKT A
Sbjct: 119 DVPSPALTFEELNLPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAA 178
Query: 335 FALPILQAL-LENPQRY----FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDM 499
F +P + + L+ P L+L+PTRELA QI+E + ++ ++ + GG
Sbjct: 179 FLIPAMVHIGLQEPMYRGDGPIVLVLSPTRELAQQIAEVAKGFCDNLMIRQTCLFGGAGR 238
Query: 500 VAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
QA L P +++ATPGRL+D +E + + + +LV+DEAD++L+M FE
Sbjct: 239 GPQANDLRHLPSLVVATPGRLIDFIEGGQ-CPMNRVNFLVLDEADQMLDMGFE 290
>UniRef50_Q03532 Cluster: ATP-dependent RNA helicase HAS1; n=70;
Eukaryota|Rep: ATP-dependent RNA helicase HAS1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 505
Score = 125 bits (301), Expect = 1e-27
Identities = 74/203 (36%), Positives = 116/203 (57%), Gaps = 9/203 (4%)
Frame = +2
Query: 77 ADKESYGDETNQDSEVEQTPTENVNEDTEDDKIT-----FKDLGVVDVLCEACEELKWKK 241
++K S E+ ++ V++ T N + + T F++L + +A E++ +
Sbjct: 5 SNKRSRDSESTEEPVVDEKSTSKQNNAAPEGEQTTCVEKFEELKLSQPTLKAIEKMGFTT 64
Query: 242 PSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALP---ILQALLENPQRYFALI-LTPTR 409
+ +Q IP L G+D++G A+TGSGKT AF +P +L +L P+ +I +TPTR
Sbjct: 65 MTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVITPTR 124
Query: 410 ELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKG 589
ELA QI L +++GG + +A L K +++IATPGRL+DHL+NTKG
Sbjct: 125 ELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKG 184
Query: 590 FNLRPLKYLVMDEADRILNMDFE 658
F + LK L++DEADRIL + FE
Sbjct: 185 FVFKNLKALIIDEADRILEIGFE 207
>UniRef50_Q31EF0 Cluster: ATP-dependent RNA helicase; n=1;
Thiomicrospira crunogena XCL-2|Rep: ATP-dependent RNA
helicase - Thiomicrospira crunogena (strain XCL-2)
Length = 401
Score = 124 bits (300), Expect = 1e-27
Identities = 71/162 (43%), Positives = 103/162 (63%), Gaps = 3/162 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+TF++L + L A EE + KP+ IQ EAIP LL KD++ A TG+GKT AF LP L
Sbjct: 1 MTFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPAL 60
Query: 353 QALLENP---QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
Q LL++P ++ LIL PTRELAFQI + + LGA + V+ GG Q +L
Sbjct: 61 QFLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCPFESNVVTGGFASDKQLEILQ 120
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNM 649
K I++ATPGRL+ ++ + + +L ++ L++DEADR+L+M
Sbjct: 121 SKIDILVATPGRLL-NIMSKEFIDLSDIELLIIDEADRMLDM 161
>UniRef50_Q2BP56 Cluster: Putative ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: Putative ATP-dependent
RNA helicase - Neptuniibacter caesariensis
Length = 427
Score = 124 bits (300), Expect = 1e-27
Identities = 65/164 (39%), Positives = 104/164 (63%), Gaps = 4/164 (2%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F +L + L + L +++P+ IQ +AIP+ L G D++ A+TG+GKT +FALPI++
Sbjct: 5 SFAELALCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPIIE 64
Query: 356 ALLENP----QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
L +NP + AL+L PTRELA Q+++ G +G++ + GG+ + Q L
Sbjct: 65 KLSKNPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLK 124
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ I++ATPGRL+D L K +L L+YLV+DEADR+L++ F
Sbjct: 125 RGTDILVATPGRLLDLLRQ-KAISLEKLEYLVLDEADRMLDLGF 167
>UniRef50_A6GPV2 Cluster: Helicase; n=1; Limnobacter sp. MED105|Rep:
Helicase - Limnobacter sp. MED105
Length = 539
Score = 124 bits (300), Expect = 1e-27
Identities = 72/181 (39%), Positives = 109/181 (60%), Gaps = 8/181 (4%)
Frame = +2
Query: 137 TENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 316
T + E+ +TF D + + +A + + +P+ IQ +AIPV + G D++G A+TG
Sbjct: 8 TISAAEEAALANVTFADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTG 67
Query: 317 SGKTGAFALPILQALL----EN--PQRY--FALILTPTRELAFQISEQFEALGASIGVKC 472
+GKT F+LPIL L+ EN P R+ ALILTPTRELA Q++ ++
Sbjct: 68 TGKTAGFSLPILNRLMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKFTPLRS 127
Query: 473 AVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMD 652
V+ GG+D+ Q L + ++IATPGRL+DH++ K NL ++ LV+DEADR+L+M
Sbjct: 128 TVVYGGVDINPQIQTLRRGVELVIATPGRLLDHVQQ-KSINLGQVQVLVLDEADRMLDMG 186
Query: 653 F 655
F
Sbjct: 187 F 187
>UniRef50_Q4N215 Cluster: RNA helicase, putative; n=3;
Aconoidasida|Rep: RNA helicase, putative - Theileria
parva
Length = 635
Score = 124 bits (300), Expect = 1e-27
Identities = 72/156 (46%), Positives = 98/156 (62%), Gaps = 5/156 (3%)
Frame = +2
Query: 206 LCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL-----QALLEN 370
+ + E +K+P+ IQ ++ P+AL G+D+IG+AETGSGKT AF LP + QALL
Sbjct: 221 ILSSIEAAGFKEPTPIQVQSWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQALLRP 280
Query: 371 PQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIAT 550
L+L PTRELA QI E G S +K +V GG+ Q + L + I+IA
Sbjct: 281 GDGPIVLVLAPTRELAEQIKETALVFGRSSKLKTSVAYGGVPKRFQTIALRRGVEILIAC 340
Query: 551 PGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
PGRL+D LE++ NLR + YLV+DEADR+L+M FE
Sbjct: 341 PGRLIDFLESSV-TNLRRVTYLVLDEADRMLDMGFE 375
>UniRef50_Q89M45 Cluster: ATP-dependent RNA helicase; n=29; cellular
organisms|Rep: ATP-dependent RNA helicase -
Bradyrhizobium japonicum
Length = 500
Score = 124 bits (299), Expect = 2e-27
Identities = 68/164 (41%), Positives = 102/164 (62%), Gaps = 3/164 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F +LG+ + + A + P+ IQ++AIP L KD++G+A+TG+GKT AF LP+L
Sbjct: 1 MSFSNLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARKDVLGIAQTGTGKTAAFVLPML 60
Query: 353 QALLENPQRYF---ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
L + R LIL PTRELA Q+ E F+ GA + A+++GG+ Q L+
Sbjct: 61 TILEKGRARARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLT 120
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ ++IATPGRL+DH E G L ++ LV+DEADR+L+M F
Sbjct: 121 RGVDVLIATPGRLLDHTER-GGLLLTGVELLVIDEADRMLDMGF 163
>UniRef50_Q6F0U0 Cluster: ATP-dependent RNA helicase; n=1;
Mesoplasma florum|Rep: ATP-dependent RNA helicase -
Mesoplasma florum (Acholeplasma florum)
Length = 666
Score = 124 bits (299), Expect = 2e-27
Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+TFK+L + D + A E+ + + ++IQ AIP+ L GK+I G + TG+GKT +F LPIL
Sbjct: 1 MTFKELQLSDKVLVALEKANFNEATEIQARAIPLFLEGKNIFGKSSTGTGKTASFVLPIL 60
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKK 529
+ + N +R A+I+ PTRELA QI Q G+ I + A ++GG DM Q L K
Sbjct: 61 EKIEPNKRRVQAVIMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGADMRDQIKRL-KD 119
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
I++ TPGR+ DHL N K L ++ +++DEAD +L M F+
Sbjct: 120 SQIVVGTPGRVNDHL-NRKTLKLDDVRTIILDEADEMLKMGFK 161
>UniRef50_Q3AX69 Cluster: DEAD/DEAH box helicase-like; n=15;
Cyanobacteria|Rep: DEAD/DEAH box helicase-like -
Synechococcus sp. (strain CC9902)
Length = 624
Score = 124 bits (299), Expect = 2e-27
Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 3/203 (1%)
Frame = +2
Query: 56 DNLEKMTADKESYGDE--TNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEEL 229
D E +T ES E T + S E T +E + + F G + L + +
Sbjct: 30 DQEEVLTTTIESSTAEPSTTEASTTEVTAEVTADEAKSEPQSGFDGFGFSEALLKTLADK 89
Query: 230 KWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTR 409
+ PS IQK A P +LG+D++G A+TG+GKT AFALP+L+ L + L+L PTR
Sbjct: 90 GYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLESGQKTPQVLVLAPTR 149
Query: 410 ELAFQISEQFEALGAS-IGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTK 586
ELA Q+++ F+A A +K + GG D +Q L + +++ TPGR++DH+
Sbjct: 150 ELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVDVVVGTPGRVMDHMRQGT 209
Query: 587 GFNLRPLKYLVMDEADRILNMDF 655
+ L LV+DEAD +L M F
Sbjct: 210 -LDTSGLTSLVLDEADEMLRMGF 231
>UniRef50_Q185X0 Cluster: ATP-dependent RNA helicase; n=3;
Clostridium difficile|Rep: ATP-dependent RNA helicase -
Clostridium difficile (strain 630)
Length = 497
Score = 124 bits (299), Expect = 2e-27
Identities = 59/162 (36%), Positives = 101/162 (62%)
Frame = +2
Query: 170 KITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPI 349
K TF+ + + + ++ + L + PS++Q+E IP L G++++ ++TGSGKT +FA+P+
Sbjct: 2 KYTFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPL 61
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
+ + + ALI+ PTRELA Q+ ++ +G V+C+ I G + Q L ++
Sbjct: 62 CENINVDYNNIQALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQR 121
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
HI++ATPGR++DH+ N L +KYLV+DEAD++ N F
Sbjct: 122 VHIVVATPGRILDHI-NRGSIKLENVKYLVIDEADKMFNKGF 162
>UniRef50_A6DIU5 Cluster: Probable ATP dependent RNA helicase; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ATP
dependent RNA helicase - Lentisphaera araneosa HTCC2155
Length = 537
Score = 124 bits (299), Expect = 2e-27
Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 1/160 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALL-GKDIIGLAETGSGKTGAFALPILQ 355
F LG+ + + E +K+PS IQ++AIPV L DIIG A+TG+GKT AF LPI+Q
Sbjct: 4 FTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLPIVQ 63
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
+ ++ ALIL PTRELA Q++E+ ++ G+ + GG ++ Q L K
Sbjct: 64 KIEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKKGVD 123
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ATPGR + +E+ K L L+YLV+DEAD +LNM F
Sbjct: 124 LVVATPGRCIHFIEDGK-LELDSLEYLVLDEADEMLNMGF 162
>UniRef50_A4M6V6 Cluster: DEAD/DEAH box helicase domain protein;
n=2; cellular organisms|Rep: DEAD/DEAH box helicase
domain protein - Petrotoga mobilis SJ95
Length = 530
Score = 124 bits (299), Expect = 2e-27
Identities = 60/160 (37%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKD-IIGLAETGSGKTGAFALPILQ 355
F+ +G+ D + A + ++ P+ IQ++ IP+ L GK+ +IG A+TG+GKT AF +P+++
Sbjct: 4 FQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPLIE 63
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
L E AL+LTPTRELA Q+ + ++L + + + GG+ + Q L ++
Sbjct: 64 RLDEKANDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIRALKRRVD 123
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ TPGR++DHL N ++ +KYLV+DEAD +L+M F
Sbjct: 124 LVVGTPGRIIDHL-NRGTLDITKIKYLVIDEADEMLDMGF 162
>UniRef50_Q95XM9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 763
Score = 124 bits (299), Expect = 2e-27
Identities = 60/145 (41%), Positives = 88/145 (60%), Gaps = 3/145 (2%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F+ + + + +AC + P+ IQ+ IPVAL GKDI A TG+GKT AF LPIL
Sbjct: 148 VSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPIL 207
Query: 353 QALLENPQRYFA---LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
+ ++ P+ L+L PTRELA Q+ + F L I ++ + GG+D+ AQ L
Sbjct: 208 ERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALR 267
Query: 524 KKPHIIIATPGRLVDHLENTKGFNL 598
P +++ATPGRL+DHL N+ FNL
Sbjct: 268 SGPDVVVATPGRLIDHLHNSPSFNL 292
>UniRef50_Q5D9C4 Cluster: SJCHGC09528 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09528 protein - Schistosoma
japonicum (Blood fluke)
Length = 454
Score = 124 bits (299), Expect = 2e-27
Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 14/175 (8%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F +LGV + E + P+++QK IPV L G D++ A+TGSGKT AF +PIL
Sbjct: 1 MSFGELGVCPEIVELLRDKGISAPTEVQKGCIPVILEGNDVVACAKTGSGKTAAFLIPIL 60
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASIG---VKCAVIVGGMDMVAQALMLS 523
Q+L+ + +ALI+TPTRELA QI EQ L G VI GG ++ Q++ L+
Sbjct: 61 QSLMTELKPLYALIITPTRELAHQIGEQAAGLNLIQGEPLCNVLVITGGRSIIHQSIDLA 120
Query: 524 KKPHIIIATPGRLVD-----------HLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ PHII++TPGRL D ++ + + + L K +V+DEADR+L +F
Sbjct: 121 RSPHIIVSTPGRLADLLRTQIAAQEANVTDKQEWTLSRTKVVVLDEADRLLEDNF 175
>UniRef50_Q4P9P3 Cluster: ATP-dependent RNA helicase DRS1; n=1;
Ustilago maydis|Rep: ATP-dependent RNA helicase DRS1 -
Ustilago maydis (Smut fungus)
Length = 932
Score = 124 bits (299), Expect = 2e-27
Identities = 79/226 (34%), Positives = 113/226 (50%), Gaps = 24/226 (10%)
Frame = +2
Query: 50 NNDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKD-------------- 187
++D L+ D+ES E + D E EQ ED T D
Sbjct: 275 DDDELQVAEQDEESNSSEDDSDLETEQEKARKAAFFAEDPIATSADSSSKSKSTNDAESS 334
Query: 188 LGVVDV---LCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
G D+ + A L + KP+ IQ IP+AL GKDI+ A TGSGKT AF +P ++
Sbjct: 335 FGAFDLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIER 394
Query: 359 LL-------ENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 517
L + + LIL PTRELA Q +++ ++ + VGG+ + +Q
Sbjct: 395 LTWRAKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAE 454
Query: 518 LSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L +P ++IATPGRL+DH+ N+ F L ++ LVMDEADR+L F
Sbjct: 455 LKLRPEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGF 500
>UniRef50_Q92GV2 Cluster: ATP-dependent RNA helicase RhlE; n=10;
Rickettsia|Rep: ATP-dependent RNA helicase RhlE -
Rickettsia conorii
Length = 414
Score = 124 bits (298), Expect = 2e-27
Identities = 64/156 (41%), Positives = 97/156 (62%)
Frame = +2
Query: 182 KDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL 361
K+ + + L A E + +P++IQK++IPVA+ G DI+ ++TGSGKT A+ LP++ +
Sbjct: 6 KNFNLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSF 65
Query: 362 LENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHII 541
++N + ALIL PTRELA QI + S + AV++GG M Q + L K P +I
Sbjct: 66 IKN--KTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFIQLKKNPKVI 123
Query: 542 IATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNM 649
I TPGR++DHL N + + V+DE DR+L+M
Sbjct: 124 IGTPGRIIDHL-NRGSLKIDRIGITVLDEMDRMLDM 158
>UniRef50_Q5NN72 Cluster: DNA and RNA helicase; n=3;
Sphingomonadales|Rep: DNA and RNA helicase - Zymomonas
mobilis
Length = 492
Score = 124 bits (298), Expect = 2e-27
Identities = 68/164 (41%), Positives = 102/164 (62%), Gaps = 3/164 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F DLG+ L +A EL +++P+ +Q AIP L+ +D+I +A+TG+GKT +F LP++
Sbjct: 1 MSFADLGLSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMI 60
Query: 353 QALLENPQRYF---ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
L R +LIL PTRELA Q++E FE G + ++++GG+ M Q L
Sbjct: 61 DILAHGRCRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALE 120
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
K ++IATPGRL+D E K L + LV+DEADR+L+M F
Sbjct: 121 KGVDVLIATPGRLLDLFERGK-ILLSSCEMLVIDEADRMLDMGF 163
>UniRef50_Q11UI8 Cluster: DEAD box-related helicase; n=3;
Sphingobacteriales|Rep: DEAD box-related helicase -
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Length = 437
Score = 124 bits (298), Expect = 2e-27
Identities = 68/165 (41%), Positives = 97/165 (58%), Gaps = 4/165 (2%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+TF D L ++ + + KP+ IQ EAIPV + D++ A+TG+GKT A+ LPIL
Sbjct: 1 MTFNDFNFNSGLLDSLSSMGFNKPTPIQTEAIPVIMSNSDLVACAQTGTGKTAAYMLPIL 60
Query: 353 QALLE-NPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVA---QALML 520
++E N L+L PTRELA QI +Q E I V + GG D Q L
Sbjct: 61 HKIIESNTDSLDTLVLVPTRELAIQIDQQIEGFSYFINVSSIAVYGGGDGATWDQQRKAL 120
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ +I+IATPGRL+ L++ NL+ +K+LV+DEADR+L+M F
Sbjct: 121 TDGANIVIATPGRLLAQLQSGTA-NLKQIKHLVLDEADRMLDMGF 164
>UniRef50_A2DB16 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 449
Score = 124 bits (298), Expect = 2e-27
Identities = 69/168 (41%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = +2
Query: 161 EDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFA 340
ED I+F DL + + A E + P+K+Q E IP L G+DI A TGSGK+ AF
Sbjct: 3 EDKIISFLDLKLAKPIIRALNENNFTNPTKVQAETIPKILSGQDICATAITGSGKSMAFL 62
Query: 341 LPILQALL--ENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQAL 514
+PI+Q LL ALI++PTRELA Q+ + L A + +++GG+ Q
Sbjct: 63 IPIVQKLLTFRGLPGPKALIMSPTRELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRE 122
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+L+ P III TPGR +D + N K L L++ V+DEADR+L FE
Sbjct: 123 LLTPAPDIIIGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFE 170
>UniRef50_P21507 Cluster: ATP-dependent RNA helicase srmB; n=82;
Proteobacteria|Rep: ATP-dependent RNA helicase srmB -
Escherichia coli (strain K12)
Length = 444
Score = 124 bits (298), Expect = 2e-27
Identities = 67/164 (40%), Positives = 104/164 (63%), Gaps = 4/164 (2%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF +L + + L EA ++ + +P+ IQ AIP AL G+D++G A TG+GKT A+ LP LQ
Sbjct: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 356 ALLENPQRYFA----LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
LL+ P++ LILTPTRELA Q+S+ L + A I GG+ + A + S
Sbjct: 65 HLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFS 124
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ I++AT GRL+ +++ + F+ R ++ L++DEADR+L+M F
Sbjct: 125 ENQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGF 167
>UniRef50_O22907 Cluster: DEAD-box ATP-dependent RNA helicase 24;
n=7; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 24 - Arabidopsis thaliana (Mouse-ear cress)
Length = 760
Score = 124 bits (298), Expect = 2e-27
Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 7/223 (3%)
Frame = +2
Query: 11 TCFQYSRLFCIPQNNDNLEKMTADKESYGDETNQDS-EVEQTPTENVNE-DTEDDKITFK 184
T +S + P N D E++ ES T Q++ + Q V+ D TF+
Sbjct: 176 TALDHSSIDYEPINKDFYEEL----ESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFE 231
Query: 185 DLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALL 364
D G + A ++ ++KP+ IQ +A+P+ L G+D+IG+A+TGSGKT AF LP++ ++
Sbjct: 232 DCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIM 291
Query: 365 ENPQRY-----FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
+ P+ +I PTRELA QI + + + G++ + + GGM Q L
Sbjct: 292 DQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAG 351
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
I++ATPGRL+D L+ K + YLV+DEADR+ ++ FE
Sbjct: 352 CEIVVATPGRLIDMLK-MKALTMMRASYLVLDEADRMFDLGFE 393
>UniRef50_Q5KNF8 Cluster: Pre-mRNA-splicing ATP-dependent RNA
helicase PRP28; n=1; Filobasidiella neoformans|Rep:
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 738
Score = 124 bits (298), Expect = 2e-27
Identities = 66/168 (39%), Positives = 103/168 (61%), Gaps = 8/168 (4%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
+++ + + + EE+ +K+PS IQ++AIP+ + +D+IG+A+TGSGKT AF +P+L
Sbjct: 317 WRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDY 376
Query: 359 L-----LENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQAL 514
+ L + R+ +ALI+ PTRELA QI + +G KC IVGG + Q
Sbjct: 377 IGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQF 436
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
L IIIATPGRL D ++ + + +Y+VMDEADR++++ FE
Sbjct: 437 ALRDGAEIIIATPGRLKDMVDKSI-LVMSQCRYVVMDEADRMVDLGFE 483
>UniRef50_Q2YZZ9 Cluster: Putative uncharacterized protein; n=1;
uncultured candidate division OP8 bacterium|Rep:
Putative uncharacterized protein - uncultured candidate
division OP8 bacterium
Length = 453
Score = 123 bits (297), Expect = 3e-27
Identities = 67/160 (41%), Positives = 96/160 (60%), Gaps = 1/160 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F L + L +A +EL + +P+ IQ +AIP A+ G+D++ A TGSGKT AF LPIL
Sbjct: 3 FSSLHLHPTLLKALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPILHQ 62
Query: 359 LLENPQ-RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
L++ P+ AL++TPTRELA QI E L + A + GG+ + Q +
Sbjct: 63 LIDRPRGTTRALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVSIRPQEHAFRRGVD 122
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++I TPGRL+DH L L++LV+DEADR+L+M F
Sbjct: 123 VLIGTPGRLLDHFRAPYA-KLAGLEHLVLDEADRMLDMGF 161
>UniRef50_A6T3R2 Cluster: ATP-dependent RNA helicase; n=52; cellular
organisms|Rep: ATP-dependent RNA helicase -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 778
Score = 123 bits (297), Expect = 3e-27
Identities = 66/160 (41%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F DL + + L +EL ++ PS IQ IP+ L +D++G A+TG+GKT +FALPIL
Sbjct: 9 FADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILAR 68
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKKPH 535
+ AL+L PTRELA Q++E F+ I G I GG AQ L + H
Sbjct: 69 IDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGVH 128
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ TPGR++DHLE +L +K +V+DEAD +L M F
Sbjct: 129 VVVGTPGRVIDHLEK-GSLDLSRIKTMVLDEADEMLRMGF 167
>UniRef50_A4BBH5 Cluster: Probable ATP-dependent RNA helicase; n=1;
Reinekea sp. MED297|Rep: Probable ATP-dependent RNA
helicase - Reinekea sp. MED297
Length = 448
Score = 123 bits (297), Expect = 3e-27
Identities = 67/153 (43%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Frame = +2
Query: 206 LCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN--PQR 379
L A E+ W +P+ +Q +IP AL GKD++ AETGSGKT A+ LP L +L P+
Sbjct: 11 LTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHRVLSERKPKA 70
Query: 380 YF-ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPG 556
L++ PTRELA Q+ + EAL G+K +I GG + QA +L + P I+IATPG
Sbjct: 71 GIRVLVMVPTRELAQQVMKDCEALTQQTGLKTVIIRGGQEFQYQASLLRRNPEIVIATPG 130
Query: 557 RLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
R+ +HL N +L ++ LV+DE DR+L+M F
Sbjct: 131 RMTEHL-NKNSTDLLDVECLVLDECDRMLDMGF 162
>UniRef50_A3EUK2 Cluster: Superfamily II DNA and RNA helicase; n=1;
Leptospirillum sp. Group II UBA|Rep: Superfamily II DNA
and RNA helicase - Leptospirillum sp. Group II UBA
Length = 444
Score = 123 bits (297), Expect = 3e-27
Identities = 63/164 (38%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+TF+ LG+ + A +L P+ IQK++IP + G+D++G+A+TG+GKTG F LP+L
Sbjct: 1 MTFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVL 60
Query: 353 QALLENPQ---RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
+ E + R AL+L+PTRELA QI + + + ++VGG+D + Q L
Sbjct: 61 HKIAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLK 120
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ I++ATPGRL+DH+ L +++DEADR+L+M F
Sbjct: 121 RNWDIVVATPGRLLDHVRR-NNLTLANTSLVIIDEADRMLDMGF 163
>UniRef50_P93008 Cluster: DEAD-box ATP-dependent RNA helicase 21;
n=8; Viridiplantae|Rep: DEAD-box ATP-dependent RNA
helicase 21 - Arabidopsis thaliana (Mouse-ear cress)
Length = 733
Score = 123 bits (297), Expect = 3e-27
Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 8/159 (5%)
Frame = +2
Query: 206 LCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENP---- 373
L +A E +KKPS IQ AIP+ L +D+IG+AETGSGKT AF LP+L + P
Sbjct: 324 LLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSE 383
Query: 374 ----QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHII 541
+ +A+++ PTRELA QI E+ +G + IVGG + Q L +++ I+
Sbjct: 384 ENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIV 443
Query: 542 IATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
IATPGRL+D LE L Y+V+DEADR+++M FE
Sbjct: 444 IATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFE 481
>UniRef50_Q98RE0 Cluster: ATP-DEPENDENT RNA HELICASE; n=1;
Mycoplasma pulmonis|Rep: ATP-DEPENDENT RNA HELICASE -
Mycoplasma pulmonis
Length = 480
Score = 123 bits (296), Expect = 4e-27
Identities = 66/159 (41%), Positives = 97/159 (61%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F + + + ++ +E+ ++KP+KIQ+ +P A GKDIIG A+TG+GKT AFA+PIL
Sbjct: 3 FTQMNIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSN 62
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
L + R L++ PTRELA QI +Q LG K A+I+GG+ Q L+ +I
Sbjct: 63 LDCSINRIQHLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQKAALNSGVNI 122
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++ATPGRL D L K +L +K +DEAD +L + F
Sbjct: 123 VVATPGRLEDLLAQNK-IDLSHIKTFTLDEADELLKIGF 160
>UniRef50_Q8D6Y8 Cluster: Superfamily II DNA and RNA helicase; n=32;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 427
Score = 123 bits (296), Expect = 4e-27
Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 5/166 (3%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F G + +A EE ++K + IQ++AIPVA G DI A+TG+GKT AF+LP++
Sbjct: 1 MSFASQGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLI 60
Query: 353 QALLENPQRYF-----ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 517
Q LLE+ + ALI PTRELA QI++ +A + A I GG M +Q M
Sbjct: 61 QQLLESGKSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERM 120
Query: 518 LSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L I++ATPGRL +H+E + ++ +++LV DEADRIL+M F
Sbjct: 121 LENGVDILVATPGRLEEHIE-SGNVSVANIEFLVFDEADRILDMGF 165
>UniRef50_Q6YPL1 Cluster: Superfamily II DNA and RNA helicase; n=3;
Candidatus Phytoplasma|Rep: Superfamily II DNA and RNA
helicase - Onion yellows phytoplasma
Length = 552
Score = 123 bits (296), Expect = 4e-27
Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ L +++ +A +EL + + IQ IP + G D+IG A+TG+GKT AF +PI++
Sbjct: 5 FEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPIIEK 64
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKKPH 535
+ Q+ +LIL PTREL Q+ E+ + L ++ AV+ GG Q L KPH
Sbjct: 65 IEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALEAKPH 124
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+IIATPGR +DHLE K +L LK L +DEAD +L M F+
Sbjct: 125 LIIATPGRAIDHLERGK-IDLSALKILTLDEADEMLKMGFQ 164
>UniRef50_Q4IZ16 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain; n=18;
Pseudomonadaceae|Rep: DEAD/DEAH box helicase:Helicase,
C-terminal:DbpA RNA binding domain - Azotobacter
vinelandii AvOP
Length = 575
Score = 123 bits (296), Expect = 4e-27
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F LG+ + A + +++PS IQ +AIPV L G D+IG A+TG+GKT AFALP+L
Sbjct: 25 FAALGIHPAVLAAITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPMLSR 84
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKKPH 535
+ + LIL PTRELA Q++ FE + + GV + GG M Q L +
Sbjct: 85 IDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQGAQ 144
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I++ATPGRL DHL + L +K+LV+DEAD +L + F
Sbjct: 145 ILVATPGRLCDHLRRDEQL-LSTVKHLVLDEADEMLKLGF 183
>UniRef50_Q1VL45 Cluster: DEAD/DEAH box helicase-like protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: DEAD/DEAH box
helicase-like protein - Psychroflexus torquis ATCC
700755
Length = 255
Score = 123 bits (296), Expect = 4e-27
Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +2
Query: 200 DVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQR 379
D L +L W+ +++Q++ +P+A G D+IG A TGSGKT AF LPIL+ + +
Sbjct: 14 DALRTGLAQLGWEFATQVQRDTVPIARQGTDVIGQARTGSGKTAAFGLPILERC-QPSGK 72
Query: 380 YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGR 559
AL+L PTRELA Q++++FE L + G+ + GG D+ QA L+K II+ TPGR
Sbjct: 73 LQALVLAPTRELANQVAQEFELLQGNAGLSIVTVYGGTDLEKQAKTLAKGVDIIVGTPGR 132
Query: 560 LVDHLENTKG-FNLRPLKYLVMDEADRILNMDF 655
++D N +G +L K L +DEADR+L+M F
Sbjct: 133 VMD--MNERGHIDLNSPKMLCLDEADRMLDMGF 163
>UniRef50_Q12QV2 Cluster: DEAD/DEAH box helicase-like protein; n=16;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013)
Length = 433
Score = 123 bits (296), Expect = 4e-27
Identities = 66/164 (40%), Positives = 97/164 (59%), Gaps = 5/164 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ + A E ++ + +Q++AIP G+D++ A+TG+GKT AFALPILQ
Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQK 62
Query: 359 LLENPQRYF-----ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
+ E P ALILTPTRELA Q+++ A + + I GGM M QA L
Sbjct: 63 MHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQKLK 122
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ II+ATPGRL++H+ +L +++LV+DEADR+L+M F
Sbjct: 123 QGADIIVATPGRLLEHIV-ACNLSLSNVEFLVLDEADRMLDMGF 165
>UniRef50_Q9VXW2 Cluster: CG6227-PA; n=11; Coelomata|Rep: CG6227-PA -
Drosophila melanogaster (Fruit fly)
Length = 1224
Score = 123 bits (296), Expect = 4e-27
Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 7/168 (4%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
T+ GV E L ++KP+ IQ +AIP + G+D+IG+A+TGSGKT AF LP+ +
Sbjct: 511 TWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFR 570
Query: 356 ALLENPQR-----YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
+L+ P A+I+ PTREL QI + S+G++ + GG + Q L
Sbjct: 571 HILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAEL 630
Query: 521 SKKPHIIIATPGRLVDHLENTKG--FNLRPLKYLVMDEADRILNMDFE 658
+ II+ TPGR++D L G NLR + Y+V+DEADR+ +M FE
Sbjct: 631 KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE 678
>UniRef50_Q1AG34 Cluster: Ded1-like DEAD-box RNA helicase; n=1;
Chironomus tentans|Rep: Ded1-like DEAD-box RNA helicase
- Chironomus tentans (Midge)
Length = 776
Score = 123 bits (296), Expect = 4e-27
Identities = 73/196 (37%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Frame = +2
Query: 116 SEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDI 295
S+ E P E + + +F D+ + +++ + ++ KP+ +QK AIP+ L G+D+
Sbjct: 248 SKYEDIPVEATGQQVPEHITSFDDIKLTEIIRTNIKMARYDKPTPVQKYAIPIILSGRDL 307
Query: 296 IGLAETGSGKTGAFALPILQALLE-----NP----------QRYFALILTPTRELAFQIS 430
+ A+TGSGKT AF +PIL +LE NP Q L+L PTRELA QI
Sbjct: 308 MSCAQTGSGKTAAFLVPILNRMLEQGASMNPASNRPYQRRKQYPLGLVLAPTRELATQIY 367
Query: 431 EQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLK 610
E+ + ++ AV+ GG + Q L + H+I+ATPGRL D + N L L+
Sbjct: 368 EEAKKFSYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRL-DDIINRGKIGLENLR 426
Query: 611 YLVMDEADRILNMDFE 658
+LV+DEADR+L+M FE
Sbjct: 427 FLVLDEADRMLDMGFE 442
>UniRef50_A3BT52 Cluster: DEAD-box ATP-dependent RNA helicase 29;
n=3; Magnoliophyta|Rep: DEAD-box ATP-dependent RNA
helicase 29 - Oryza sativa subsp. japonica (Rice)
Length = 851
Score = 123 bits (296), Expect = 4e-27
Identities = 65/159 (40%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ +G+ + + ++ P+ IQ++A+P+ L G DI +A TGSGKT AF +P++Q
Sbjct: 51 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQR 110
Query: 359 LLENPQR--YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
L + ALIL+PTR+LA Q + + LG +K ++IVGG M +Q L++ P
Sbjct: 111 LRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP 170
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNM 649
IIIATPGRLV HL + NLR ++Y+V DEAD + ++
Sbjct: 171 DIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSL 209
>UniRef50_UPI00006CA44F Cluster: DEAD/DEAH box helicase family
protein; n=1; Tetrahymena thermophila SB210|Rep:
DEAD/DEAH box helicase family protein - Tetrahymena
thermophila SB210
Length = 642
Score = 122 bits (295), Expect = 6e-27
Identities = 71/205 (34%), Positives = 115/205 (56%), Gaps = 4/205 (1%)
Frame = +2
Query: 56 DNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKW 235
DN++ +++ Y + ++ +E + PT + D F DL V +A +++K+
Sbjct: 115 DNVKITSSNMNKYLSDESKATEQQDAPTSRAGFFSND---LFDDLEVCKPTKDALKQMKF 171
Query: 236 KKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN----PQRYFALILTP 403
+ IQ IP L G+D++G A+TGSGKT AF +P ++ L + +++TP
Sbjct: 172 TNMTHIQSRTIPHLLKGRDVLGAAKTGSGKTLAFLIPAIEMLYKTNFVQSMGTGIIVITP 231
Query: 404 TRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENT 583
TRELA QI + + L +++GG + A+A+ L ++IIATPGRL+DHL+NT
Sbjct: 232 TRELATQIYDVAKQLMFFHSKTLGLLIGGANRKAEAIKLKTGVNMIIATPGRLLDHLQNT 291
Query: 584 KGFNLRPLKYLVMDEADRILNMDFE 658
GF L L++DEAD IL + F+
Sbjct: 292 AGFAYHNLLGLIIDEADAILRIGFQ 316
>UniRef50_Q484Q1 Cluster: RNA helicase DeaD; n=1; Colwellia
psychrerythraea 34H|Rep: RNA helicase DeaD - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 611
Score = 122 bits (295), Expect = 6e-27
Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 1/167 (0%)
Frame = +2
Query: 158 TEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAF 337
TE + + F LG+ + L A + + + IQ IP L GKD++G A+TG+GKT AF
Sbjct: 10 TEPEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAF 69
Query: 338 ALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQAL 514
LP L + + ++ ++L PTRELA Q++E E+ G + G++ A + GG Q
Sbjct: 70 GLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQ 129
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L + +++ TPGRL+DHL K L L+ V+DEAD +LNM F
Sbjct: 130 QLERGAQVVVGTPGRLMDHLRR-KSLKLDELRVCVLDEADEMLNMGF 175
>UniRef50_Q0M1B5 Cluster: Helicase-like:DEAD/DEAH box helicase-like;
n=11; Alphaproteobacteria|Rep: Helicase-like:DEAD/DEAH
box helicase-like - Caulobacter sp. K31
Length = 678
Score = 122 bits (295), Expect = 6e-27
Identities = 63/162 (38%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F +LG+ +A + + + IQ AIPVAL G+D++G+A+TG+GKT AF LP++
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDK 63
Query: 359 LLENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
L+ + AL++ PTRELA Q++ FE + A+++GG+ Q L +
Sbjct: 64 LMNGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDRG 123
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++IATPGRL+DH E K + +++LV+DEADR+L+M F
Sbjct: 124 VDVLIATPGRLLDHFERGK-LLMTGVQFLVVDEADRMLDMGF 164
>UniRef50_A5FST0 Cluster: DEAD/DEAH box helicase domain protein;
n=8; Bacteria|Rep: DEAD/DEAH box helicase domain protein
- Dehalococcoides sp. BAV1
Length = 561
Score = 122 bits (295), Expect = 6e-27
Identities = 61/143 (42%), Positives = 95/143 (66%), Gaps = 1/143 (0%)
Frame = +2
Query: 233 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQ-RYFALILTPTR 409
+K+P+ IQ +AIP + G D+IGLA+TG+GKT A+ALPI+Q +L P+ R L++ PTR
Sbjct: 21 YKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPIIQKMLSTPRGRVRTLVIAPTR 80
Query: 410 ELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKG 589
ELA QIS+ F +LG ++ I GG++M Q L +++A PGRL+DH+
Sbjct: 81 ELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRGT- 139
Query: 590 FNLRPLKYLVMDEADRILNMDFE 658
++ ++ L++DEADR+ +M F+
Sbjct: 140 IDVCGVETLIIDEADRMFDMGFQ 162
>UniRef50_Q54CB8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 573
Score = 122 bits (295), Expect = 6e-27
Identities = 60/148 (40%), Positives = 99/148 (66%), Gaps = 5/148 (3%)
Frame = +2
Query: 230 KWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENP-QRYF----ALI 394
K++KP+ +Q P+AL G D++G+++TGSGKT +F LP ++ +L P Q Y+ L+
Sbjct: 158 KFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPGPSVLV 217
Query: 395 LTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHL 574
+ PTRELA QI+++ E + ++ A I GG +Q L LS++P I++ TPGR++D +
Sbjct: 218 VAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRIIDFM 277
Query: 575 ENTKGFNLRPLKYLVMDEADRILNMDFE 658
E + +L+ + +LV+DEADR++ M FE
Sbjct: 278 E-SGDLSLKNISFLVVDEADRLMEMGFE 304
>UniRef50_A7S2R2 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 643
Score = 122 bits (295), Expect = 6e-27
Identities = 69/195 (35%), Positives = 110/195 (56%), Gaps = 4/195 (2%)
Frame = +2
Query: 83 KESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKE 262
K+S+ E + ++E E + + E F D + + + + P+ IQK+
Sbjct: 24 KKSWDKEQQEMKDLEDRCKEIGSSEVEK----FSDFPISKRTLDGLMKAGFVTPTDIQKQ 79
Query: 263 AIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF----ALILTPTRELAFQIS 430
IPVAL G+D++G A+TGSGKT AF +PI++ L AL+++PTRELA+Q
Sbjct: 80 GIPVALSGRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTF 139
Query: 431 EQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLK 610
E +G + +I+GG D+ + + K +I++ TPGRL+ H++ T F+ L+
Sbjct: 140 EVLVKIGNKHDLSAGLIIGGKDLKNEQKRI-MKTNIVVCTPGRLLQHMDETPNFDCTSLQ 198
Query: 611 YLVMDEADRILNMDF 655
LV+DEADRIL+M F
Sbjct: 199 ILVLDEADRILDMGF 213
>UniRef50_Q58083 Cluster: Probable ATP-dependent RNA helicase
MJ0669; n=11; cellular organisms|Rep: Probable
ATP-dependent RNA helicase MJ0669 - Methanococcus
jannaschii
Length = 367
Score = 122 bits (295), Expect = 6e-27
Identities = 66/166 (39%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Frame = +2
Query: 161 EDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGK-DIIGLAETGSGKTGAF 337
E + + F +L + D + A ++KP+ IQ + IP+ L + +I+ A TGSGKT +F
Sbjct: 2 EVEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASF 61
Query: 338 ALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 517
A+P+++ + EN A+ILTPTRELA Q++++ E+L + +K A I GG + Q
Sbjct: 62 AIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA 120
Query: 518 LSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L K +I++ TPGR++DH+ N NL+ +KY ++DEAD +LNM F
Sbjct: 121 L-KNANIVVGTPGRILDHI-NRGTLNLKNVKYFILDEADEMLNMGF 164
>UniRef50_P42305 Cluster: ATP-dependent RNA helicase dbpA; n=9;
Firmicutes|Rep: ATP-dependent RNA helicase dbpA -
Bacillus subtilis
Length = 479
Score = 122 bits (295), Expect = 6e-27
Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
FK+ + + A E L + +P+K+Q+ IP AL KD++ ++TGSGKT +F +P+ +
Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
+ + ALILTPTRELA Q+ E +G +K + G Q L +K HI
Sbjct: 64 ANWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQKSHI 123
Query: 539 IIATPGRLVDHLENTKG-FNLRPLKYLVMDEADRILNMDF 655
++ TPGR++DH+E KG L L YLV+DEAD +LNM F
Sbjct: 124 VVGTPGRVLDHIE--KGTLPLDRLSYLVIDEADEMLNMGF 161
>UniRef50_UPI00015BD198 Cluster: UPI00015BD198 related cluster; n=1;
unknown|Rep: UPI00015BD198 UniRef100 entry - unknown
Length = 364
Score = 122 bits (294), Expect = 8e-27
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Frame = +2
Query: 206 LCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF 385
L +A E+ +K+P+ IQ++AIP+AL G DI+G A TG+GKTGAFA+PI++ L +
Sbjct: 11 LQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVEKLQKGKPDVK 70
Query: 386 ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQA-LMLSKKPHIIIATPGRL 562
AL+LTPTRELA Q+ EQ L + V GG + ++ +K I+I TPGR+
Sbjct: 71 ALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDILQNKNVDILIGTPGRI 130
Query: 563 VDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
D L + K NL ++YLV+DE D++L+M F
Sbjct: 131 KD-LIDRKALNLSKVEYLVLDEFDQMLDMGF 160
>UniRef50_Q9KKW0 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=19; Vibrio cholerae|Rep: ATP-dependent RNA
helicase, DEAD box family - Vibrio cholerae
Length = 428
Score = 122 bits (294), Expect = 8e-27
Identities = 63/139 (45%), Positives = 90/139 (64%)
Frame = +2
Query: 239 KPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELA 418
+PS IQ IP L GKD+ LA TGSGKT A+ LP+L+ L +P++ AL+L PTRELA
Sbjct: 44 EPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLERLKTSPEQQ-ALVLVPTRELA 102
Query: 419 FQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNL 598
Q+SE +G ++G+ + GG+D Q L++ P+I++AT GRL D ++ G L
Sbjct: 103 MQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFDLTQS--GLRL 160
Query: 599 RPLKYLVMDEADRILNMDF 655
+ LV+DEADR+L+M F
Sbjct: 161 NRVTTLVLDEADRLLDMGF 179
>UniRef50_Q087U7 Cluster: DEAD/DEAH box helicase domain protein;
n=5; Gammaproteobacteria|Rep: DEAD/DEAH box helicase
domain protein - Shewanella frigidimarina (strain NCIMB
400)
Length = 421
Score = 122 bits (294), Expect = 8e-27
Identities = 71/176 (40%), Positives = 101/176 (57%), Gaps = 14/176 (7%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F DL + +L ELK+++P+ IQ +AIPV L GKD++ A+TG+GKT AFALP+L
Sbjct: 1 MSFADLSLHPILINRLAELKYQQPTPIQLQAIPVILSGKDVMAGAQTGTGKTAAFALPLL 60
Query: 353 QALLE--------------NPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGG 490
LL N AL+L PTRELA Q+ E V ++ GG
Sbjct: 61 HQLLTHQDNLAAQPDTQHINSTPITALVLVPTRELAQQVHSSIEQYAYGSSVTSVMVYGG 120
Query: 491 MDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+ + Q L+ HI++ATPGRL+D L + +L L +LV DEADR+L+M F+
Sbjct: 121 VSIGEQIRQLANGTHILVATPGRLLDLLRK-RALSLSQLTHLVFDEADRMLDMGFK 175
>UniRef50_Q8SQM5 Cluster: ATP-dependent RNA helicase eIF4A; n=1;
Encephalitozoon cuniculi|Rep: ATP-dependent RNA helicase
eIF4A - Encephalitozoon cuniculi
Length = 425
Score = 122 bits (294), Expect = 8e-27
Identities = 68/201 (33%), Positives = 117/201 (58%), Gaps = 2/201 (0%)
Frame = +2
Query: 62 LEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKI--TFKDLGVVDVLCEACEELKW 235
++++T E + D + +E+ + E++ D+ ++ T++D G+ + L + + +
Sbjct: 1 MKQVTEQAEDFVDTRSSGTEIREF--EDLRSDSSQIRMFDTWEDYGLKEDLLKGIYSIGF 58
Query: 236 KKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTREL 415
+ PS IQK AI + G+DI A++G+GKTGAFA+ LQ + L+L TRE+
Sbjct: 59 ETPSFIQKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQILVLASTREI 118
Query: 416 AFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFN 595
A Q + +FE LG +G + A++ GG + A + L KKPHI++ TPGR V+H+ N +
Sbjct: 119 AAQNAARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHIVVGTPGR-VEHMININELS 177
Query: 596 LRPLKYLVMDEADRILNMDFE 658
+ +K V+DEAD +L F+
Sbjct: 178 MDNIKLFVIDEADEMLKAGFQ 198
>UniRef50_Q8TDD1 Cluster: ATP-dependent RNA helicase DDX54; n=45;
Eukaryota|Rep: ATP-dependent RNA helicase DDX54 - Homo
sapiens (Human)
Length = 881
Score = 122 bits (294), Expect = 8e-27
Identities = 74/184 (40%), Positives = 107/184 (58%), Gaps = 4/184 (2%)
Frame = +2
Query: 116 SEVEQTPTENVNEDTEDDKIT--FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGK 289
S+VE E V + K + F+ +G+ + + + +K P+ IQ++ IPV L GK
Sbjct: 75 SDVEPDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGK 134
Query: 290 DIIGLAETGSGKTGAFALPILQALLENPQRYFA--LILTPTRELAFQISEQFEALGASIG 463
D++ +A TGSGKT F LP+ + L + + A LIL+PTRELA Q + + LG G
Sbjct: 135 DVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTG 194
Query: 464 VKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRIL 643
+K A+I+GG M Q L + P IIIATPGRLV H+ L+ ++Y+V DEADR+
Sbjct: 195 LKTALILGGDRMEDQFAALHENPDIIIATPGRLV-HVAVEMSLKLQSVEYVVFDEADRLF 253
Query: 644 NMDF 655
M F
Sbjct: 254 EMGF 257
>UniRef50_Q5FS73 Cluster: ATP-dependent RNA helicase; n=2;
Gluconobacter oxydans|Rep: ATP-dependent RNA helicase -
Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 432
Score = 122 bits (293), Expect = 1e-26
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F DL + L A +E + KP+ IQ ++IP+ L G+D++GLA+TG+GKT +FALP+L
Sbjct: 9 FADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPLLHR 68
Query: 359 LLENPQ-----RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
L P+ L+L PTREL QI++ FE+ V+ I GG+ V Q L
Sbjct: 69 LAATPRPAPKNGARVLVLAPTRELVSQIADGFESFSRHQPVRVTTIFGGVSQVHQVKALE 128
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ II+A PGRL+D +E +L L+ LV+DEAD++L+M F
Sbjct: 129 EGVDIIVAAPGRLLDLIEQGL-CDLSQLETLVLDEADQMLDMGF 171
>UniRef50_Q0HYG8 Cluster: DEAD/DEAH box helicase domain protein;
n=62; Proteobacteria|Rep: DEAD/DEAH box helicase domain
protein - Shewanella sp. (strain MR-7)
Length = 549
Score = 122 bits (293), Expect = 1e-26
Identities = 69/166 (41%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F LG+ + +A E + PS IQ +AIP L GKD++ A+TG+GKT F LP+L
Sbjct: 1 MSFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 353 QALLENPQ----RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
+ L + + + AL+LTPTRELA Q+SE E G + ++ AV+ GG+ + Q L
Sbjct: 61 ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120
Query: 521 SKKPHIIIATPGRLVDHL-ENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ATPGRL+D + +N FN L+ LV+DEADR+L+M F
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNVVKFN--QLEILVLDEADRMLDMGF 164
>UniRef50_A1FEC3 Cluster: DEAD/DEAH box helicase-like; n=21;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like -
Pseudomonas putida W619
Length = 621
Score = 122 bits (293), Expect = 1e-26
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 3/162 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F + + L +A ELK+ +P+ +Q AIP+AL G+D+ A+TGSGKT AF LP+L
Sbjct: 184 FSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNR 243
Query: 359 LLE---NPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
L++ ALIL PTRELA Q +Q + +K ++ GG D QA ML K
Sbjct: 244 LVDLKGARVEIRALILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKV 303
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
P ++I TPGRL++ L N +L ++ +++DEADR+L+M F
Sbjct: 304 PDVLIGTPGRLLEQL-NAGNLDLSHVQVMILDEADRMLDMGF 344
>UniRef50_Q9N478 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 732
Score = 122 bits (293), Expect = 1e-26
Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 4/191 (2%)
Frame = +2
Query: 95 GDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPV 274
G E EVEQ E + + + + F+D + E ++ + KP++IQ++ I
Sbjct: 51 GQEETMLDEVEQKYQEMLKKSSRTF-LRFEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAY 109
Query: 275 ALLGKDIIGLAETGSGKTGAFALPILQALLE---NPQRYF-ALILTPTRELAFQISEQFE 442
+L G D++G A+TGSGKT A +P+L+AL +P ALI++PTRELA Q
Sbjct: 110 SLTGSDVVGAAKTGSGKTLALVIPVLEALWRAKWSPDYGLGALIISPTRELALQTFSTIN 169
Query: 443 ALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVM 622
A+GA G C +++GG D+ + +S +II+ TPGRL+ H++ + L+ LV+
Sbjct: 170 AVGAHHGFSCGLVIGGSDVAFERNRIS-GINIIVCTPGRLLQHMDENAQMSCDSLQVLVL 228
Query: 623 DEADRILNMDF 655
DEADR+L+M F
Sbjct: 229 DEADRMLDMGF 239
>UniRef50_Q54Y81 Cluster: Putative RNA helicase; n=2; Dictyostelium
discoideum|Rep: Putative RNA helicase - Dictyostelium
discoideum AX4
Length = 834
Score = 122 bits (293), Expect = 1e-26
Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 8/169 (4%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
T+++ + + EA +L ++KPS IQ ++IP++L G+DI+G+AETGSGKT AF +P+L
Sbjct: 414 TWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLI 473
Query: 356 ALLENPQRY--------FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQA 511
+ + P+ +AL++ PTREL QI ++ G + +VGG + QA
Sbjct: 474 YISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQA 533
Query: 512 LMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+SK IIIATPGRL D LE + L Y+V+DEAD ++++ FE
Sbjct: 534 YQVSKGCEIIIATPGRLNDCLEK-RYLVLNQCNYIVLDEADMMIDLGFE 581
>UniRef50_Q39MK8 Cluster: DEAD/DEAH box helicase; n=10;
Proteobacteria|Rep: DEAD/DEAH box helicase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 481
Score = 121 bits (292), Expect = 1e-26
Identities = 63/166 (37%), Positives = 101/166 (60%), Gaps = 5/166 (3%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F LG++D L ++L ++ P+ +Q +AIP L GKD++ A+TG+GKT FALP+L
Sbjct: 1 MSFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLL 60
Query: 353 QALLE-----NPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 517
Q L++ + R L+L PTRELA Q+ + F A G + ++ GG+ + Q +
Sbjct: 61 QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMK 120
Query: 518 LSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L K +++ATPGRL+D L ++ LV+DEADR+L++ F
Sbjct: 121 LRKGVDVLVATPGRLLD-LNRQNAVQFDQVQTLVLDEADRMLDLGF 165
>UniRef50_A3ZWP8 Cluster: ATP-dependent RNA helicase; n=1;
Blastopirellula marina DSM 3645|Rep: ATP-dependent RNA
helicase - Blastopirellula marina DSM 3645
Length = 428
Score = 121 bits (292), Expect = 1e-26
Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
I + D+ + + A E ++ +PS IQ IP+AL G+D++G A TG+GKT AF +PI+
Sbjct: 4 INYADMALSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPII 63
Query: 353 QALLENP--QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
+ L P + ALILTPTRELA Q+ ++ L + + GG + +Q L +
Sbjct: 64 ERLEHGPNSRNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQMEKLKR 123
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
PHI++ TPGR++D L + L L+ +V+DEADR+L++ F
Sbjct: 124 APHIVVGTPGRVID-LMTRRALQLEMLRTVVLDEADRMLDIGF 165
>UniRef50_O26305 Cluster: ATP-dependent RNA helicase, eIF-4A family;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: ATP-dependent RNA helicase, eIF-4A family -
Methanobacterium thermoautotrophicum
Length = 425
Score = 121 bits (292), Expect = 1e-26
Identities = 62/161 (38%), Positives = 99/161 (61%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+ F + + + A +++ ++ + IQ +PV L G D++G A+TG+GKT AFA+P+L
Sbjct: 4 LEFSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVL 63
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
+ L E + ALI+ PTREL Q+SE+ + +G + VK + GG + Q L +
Sbjct: 64 ENL-EAERVPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLRRGV 122
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
H+I+ATPGRL+DH+E +L + +V+DEAD +LNM F
Sbjct: 123 HVIVATPGRLIDHIERGT-VDLGGISTVVLDEADEMLNMGF 162
>UniRef50_O74393 Cluster: ATP-dependent RNA helicase mak5; n=1;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase mak5 - Schizosaccharomyces pombe (Fission
yeast)
Length = 648
Score = 121 bits (292), Expect = 1e-26
Identities = 65/140 (46%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
Frame = +2
Query: 233 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF--ALILTPT 406
+ KP IQ IP A +G DIIG A+TGSGKT AF +PIL+ L N + AL++ PT
Sbjct: 142 FSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPT 201
Query: 407 RELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHL-ENT 583
RELA QI + FE + S ++ I GG+ + Q +L+K PH+++ATPGRL + EN
Sbjct: 202 RELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENN 261
Query: 584 KGFNLRPLKYLVMDEADRIL 643
N + +K LV+DEADR+L
Sbjct: 262 LTGNFKKIKCLVLDEADRLL 281
>UniRef50_Q4IF76 Cluster: ATP-dependent RNA helicase DBP2; n=4;
Fungi/Metazoa group|Rep: ATP-dependent RNA helicase DBP2
- Gibberella zeae (Fusarium graminearum)
Length = 555
Score = 121 bits (292), Expect = 1e-26
Identities = 76/201 (37%), Positives = 109/201 (54%), Gaps = 9/201 (4%)
Frame = +2
Query: 83 KESYGDETNQDSEVEQTPTEN----VNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSK 250
KE ET D++VE ++ + TF + G + + + + P+
Sbjct: 100 KEHPDVETRSDADVEAFRRKHQMTIAGSNVPKPVETFDEAGFPRYVMDEVKAQGFPAPTA 159
Query: 251 IQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL-----QALLENPQRYFALILTPTREL 415
IQ + P+AL G+D++G+AETGSGKT + LP + Q LL L+L PTREL
Sbjct: 160 IQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTREL 219
Query: 416 AFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFN 595
A QI E+ + G S ++ + GG+ Q LS+ + IATPGRL+D LE K N
Sbjct: 220 AVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGK-TN 278
Query: 596 LRPLKYLVMDEADRILNMDFE 658
LR + YLV+DEADR+L+M FE
Sbjct: 279 LRRVTYLVLDEADRMLDMGFE 299
>UniRef50_Q6A6U7 Cluster: ATP-dependent RNA helicase; n=3;
Actinomycetales|Rep: ATP-dependent RNA helicase -
Propionibacterium acnes
Length = 700
Score = 121 bits (291), Expect = 2e-26
Identities = 74/195 (37%), Positives = 108/195 (55%), Gaps = 3/195 (1%)
Frame = +2
Query: 80 DKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQK 259
D S D + + + E T +++ D + F LGV D + A + P +IQ
Sbjct: 198 DDWSRDDHDDDNMDWEATELTDLDVTGIDHEGGFSALGVPDEIVAALAKTGITDPFRIQI 257
Query: 260 EAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQ---RYFALILTPTRELAFQIS 430
AIP A+ G+D++G A TGSGKT AF +P+L L P+ R ALIL+PTRELA QI+
Sbjct: 258 AAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATPREDNRPRALILSPTRELAMQIA 317
Query: 431 EQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLK 610
+ +L +S+G+ +I GGM Q + +++ATPGRLVD LE T +L +
Sbjct: 318 DALSSLASSMGLSTILIAGGMSYGPQTKAFKRGVDLVVATPGRLVDLLE-TGDADLSGVA 376
Query: 611 YLVMDEADRILNMDF 655
V+DEAD + + F
Sbjct: 377 VTVLDEADHMAELGF 391
>UniRef50_Q11UP8 Cluster: ATP-dependent RNA helicase; n=1; Cytophaga
hutchinsonii ATCC 33406|Rep: ATP-dependent RNA helicase
- Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469)
Length = 580
Score = 121 bits (291), Expect = 2e-26
Identities = 60/160 (37%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
FKDLG+ + EA E + + + + IQ++ IP+ + GKD+ G A+TG+GKT AF +P ++
Sbjct: 3 FKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEH 62
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGA-SIGVKCAVIVGGMDMVAQALMLSKKPH 535
+ + + +LIL PTRELA Q+ + + L G++ + GG + Q L H
Sbjct: 63 VDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGAH 122
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I++ TPGR++DHL+ + N L +++DEAD +LNM F
Sbjct: 123 IVVGTPGRIIDHLDR-RTLNASHLSQIILDEADEMLNMGF 161
>UniRef50_Q8I0W7 Cluster: Snrnp protein, putative; n=6;
Plasmodium|Rep: Snrnp protein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 1123
Score = 121 bits (291), Expect = 2e-26
Identities = 67/159 (42%), Positives = 98/159 (61%), Gaps = 8/159 (5%)
Frame = +2
Query: 206 LCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLE-NPQRY 382
L +A ++ K++KP+ IQ +AIP+AL +D+IG+AETGSGKT AF LP+L + + P Y
Sbjct: 709 LLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTY 768
Query: 383 -------FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHII 541
+AL++ P+RELA QI E+ + + +VGG + AQA L + I+
Sbjct: 769 ETSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIV 828
Query: 542 IATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
I TPGRL D LE L Y+++DEADR+++M FE
Sbjct: 829 IGTPGRLQDCLEKAYTV-LNQCNYVILDEADRMMDMGFE 866
>UniRef50_Q5CP59 Cluster: DEAD box polypeptide, Y
chromosome-related; n=3; Apicomplexa|Rep: DEAD box
polypeptide, Y chromosome-related - Cryptosporidium
hominis
Length = 702
Score = 121 bits (291), Expect = 2e-26
Identities = 75/218 (34%), Positives = 125/218 (57%), Gaps = 18/218 (8%)
Frame = +2
Query: 56 DNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKI--TFKDL-GVVDVLCEACEE 226
D+ +K+ + + + N D+ + P E DT K +F +L G+ ++L +
Sbjct: 160 DDEDKIFSKSKEHRAGINFDA-YDNIPVEMTGSDTNKIKPMQSFMELEGIHEILLDNIRR 218
Query: 227 LKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN-----PQRY--- 382
+K+++P+ +QK +IP L G+D++ A+TGSGKT AF PI+ +L + PQ+
Sbjct: 219 VKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIVMKMLNDGPPPTPQQSSLR 278
Query: 383 -------FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHII 541
AL+L+PTRELA Q E+ G++ V+ GG ++ +Q + L + II
Sbjct: 279 IKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYGGSEVRSQIMDLDRGSDII 338
Query: 542 IATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ATPGRL D ++ K NL+ +K+L++DEADR+L+M F
Sbjct: 339 VATPGRLRDLIDRGK-VNLKLIKFLILDEADRMLDMGF 375
>UniRef50_Q86XP3 Cluster: ATP-dependent RNA helicase DDX42; n=47;
Coelomata|Rep: ATP-dependent RNA helicase DDX42 - Homo
sapiens (Human)
Length = 938
Score = 121 bits (291), Expect = 2e-26
Identities = 66/166 (39%), Positives = 98/166 (59%), Gaps = 5/166 (3%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL- 352
+F G + L + ++ +P+ IQ + +PVAL G+D+IG+A+TGSGKT AF P+L
Sbjct: 254 SFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLI 313
Query: 353 ----QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
Q LE A+I+ PTREL QI + + G + ++ + GG M QA L
Sbjct: 314 HIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKAL 373
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+ I++ TPGRL+DH++ K NL+ + YLV DEADR+ +M FE
Sbjct: 374 QEGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFE 418
>UniRef50_Q13206 Cluster: Probable ATP-dependent RNA helicase DDX10;
n=24; Coelomata|Rep: Probable ATP-dependent RNA helicase
DDX10 - Homo sapiens (Human)
Length = 875
Score = 121 bits (291), Expect = 2e-26
Identities = 68/175 (38%), Positives = 106/175 (60%), Gaps = 4/175 (2%)
Frame = +2
Query: 143 NVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSG 322
NVNE T F D + + +E +++ ++IQK+ I +AL GKD++G A+TGSG
Sbjct: 64 NVNEITR-----FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSG 118
Query: 323 KTGAFALPILQALLE----NPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGG 490
KT AF +P+L+AL + LI++PTRELA+Q E +G + +I+GG
Sbjct: 119 KTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGG 178
Query: 491 MDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
D+ +A ++ +I++ TPGRL+ H++ T F+ L+ LV+DEADRIL+M F
Sbjct: 179 KDLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGF 232
>UniRef50_Q9KAA6 Cluster: ATP-dependent RNA helicase; n=5;
Firmicutes|Rep: ATP-dependent RNA helicase - Bacillus
halodurans
Length = 539
Score = 120 bits (290), Expect = 2e-26
Identities = 63/161 (39%), Positives = 99/161 (61%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
I F +L + + + +A E+ +++PS IQ +AIP L G D+IG A+TG+GKT AF +P++
Sbjct: 6 IKFNELQIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVV 65
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
+ + + ALILTPTRELA Q+S + + L ++ I GG +V Q L +
Sbjct: 66 EKV-STGRHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALKQGV 124
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++I TPGR++DHL K L + +++DEAD +L+M F
Sbjct: 125 QVVIGTPGRIIDHLRR-KTLILDHVNTVILDEADEMLDMGF 164
>UniRef50_Q8XKJ8 Cluster: ATP-dependent RNA helicase; n=12;
Clostridium|Rep: ATP-dependent RNA helicase -
Clostridium perfringens
Length = 528
Score = 120 bits (290), Expect = 2e-26
Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Frame = +2
Query: 167 DKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALP 346
+ I F DLG+ + L +A +++ +++PS+IQ E+IPVAL G DIIG A+TG+GKT AF
Sbjct: 2 NNIKFDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCA 61
Query: 347 IL-QALLENPQRY-FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
I+ A ++ ALIL PTRELA Q++E+ LG + I GG + Q L
Sbjct: 62 IINNADFSGKKKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRAL 121
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I++ TPGR++D L K L + +LV+DEAD +LNM F
Sbjct: 122 KNGVDIVVGTPGRVLD-LIRRKSLPLNDIGFLVLDEADEMLNMGF 165
>UniRef50_A2YDR2 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 523
Score = 120 bits (290), Expect = 2e-26
Identities = 65/168 (38%), Positives = 101/168 (60%), Gaps = 4/168 (2%)
Frame = +2
Query: 167 DKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALP 346
DK+ F DL + D+ A ++ + ++IQ +IP +LG D++ A+TGSGKT AF +P
Sbjct: 85 DKL-FSDLPISDLTANAIRDMNYTHLTEIQARSIPPLMLGSDVMASAKTGSGKTLAFLIP 143
Query: 347 ILQALLE---NPQRYFALI-LTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQAL 514
++ L +P+ +I L PTRELA Q + L ++GG+D+ +A
Sbjct: 144 AIELLCRLRFSPRNGTGVIVLCPTRELAIQTHNVAKELMRYHSQTLGYVIGGIDLRGEAE 203
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
L+K ++++ATPGRL+DH++ TK F LK L++DEADRIL +FE
Sbjct: 204 QLAKGINVLVATPGRLLDHMQKTKSFKYECLKCLIIDEADRILEQNFE 251
>UniRef50_Q965K2 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 970
Score = 120 bits (290), Expect = 2e-26
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 7/168 (4%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
T+ GV + ++ ++ KP+ IQ +AIP + G+D+IG+A+TGSGKT AF LP+ +
Sbjct: 305 TWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFR 364
Query: 356 ALLENPQRY-----FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
+L+ P+ A+IL PTRELA Q ++ +G+K A GG+ + Q L
Sbjct: 365 HILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADL 424
Query: 521 SKKPHIIIATPGRLVDHLENTKG--FNLRPLKYLVMDEADRILNMDFE 658
+ I++ TPGR++D L G NLR + YLV+DEADR+ + FE
Sbjct: 425 KRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFE 472
>UniRef50_Q9SF41 Cluster: DEAD-box ATP-dependent RNA helicase 45;
n=15; Eukaryota|Rep: DEAD-box ATP-dependent RNA helicase
45 - Arabidopsis thaliana (Mouse-ear cress)
Length = 989
Score = 120 bits (290), Expect = 2e-26
Identities = 61/163 (37%), Positives = 95/163 (58%), Gaps = 7/163 (4%)
Frame = +2
Query: 191 GVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN 370
G+ + + ++L ++KP IQ +A+P+ + G+D IG+A+TGSGKT F LP+L+ + +
Sbjct: 402 GLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQ 461
Query: 371 P-----QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
P L++ PTREL QI ++G+ C + GG + Q L +
Sbjct: 462 PPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTE 521
Query: 536 IIIATPGRLVDHLENTKG--FNLRPLKYLVMDEADRILNMDFE 658
I++ TPGR++D L + G NLR + YLVMDEADR+ +M FE
Sbjct: 522 IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFE 564
>UniRef50_Q8H0U8 Cluster: DEAD-box ATP-dependent RNA helicase 42; n=2;
Arabidopsis thaliana|Rep: DEAD-box ATP-dependent RNA
helicase 42 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1166
Score = 120 bits (290), Expect = 2e-26
Identities = 60/163 (36%), Positives = 95/163 (58%), Gaps = 7/163 (4%)
Frame = +2
Query: 191 GVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN 370
G+ + + ++L ++KP IQ +A+P+ + G+D IG+A+TGSGKT F LP+L+ + +
Sbjct: 535 GLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQ 594
Query: 371 P-----QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPH 535
P L++ PTREL QI +G++C + GG + Q L +
Sbjct: 595 PPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE 654
Query: 536 IIIATPGRLVDHLENTKG--FNLRPLKYLVMDEADRILNMDFE 658
I++ TPGR++D L + G NLR + +LVMDEADR+ +M FE
Sbjct: 655 IVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFE 697
>UniRef50_Q26CN9 Cluster: ATP-dependent RNA helicase; n=1;
Flavobacteria bacterium BBFL7|Rep: ATP-dependent RNA
helicase - Flavobacteria bacterium BBFL7
Length = 644
Score = 120 bits (289), Expect = 3e-26
Identities = 67/162 (41%), Positives = 100/162 (61%), Gaps = 2/162 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGK-DIIGLAETGSGKTGAFALPILQ 355
F+ LG+ L ++ ++ P++IQ+++IP+ L D IGLA+TG+GKT AF LP+L
Sbjct: 15 FEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLPLLD 74
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIG-VKCAVIVGGMDMVAQALMLSKKP 532
+ N + ALIL PTRELA QI Q E + +G + + GG +++ Q + +
Sbjct: 75 LIDVNSREVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMNQIRDIRRGA 134
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
II+ATPGRL+D L + L LKY+V+DEAD +LNM F+
Sbjct: 135 QIIVATPGRLMD-LMKRREVKLDALKYMVLDEADEMLNMGFK 175
>UniRef50_A4BHZ9 Cluster: ATP-dependent RNA helicase; n=1; Reinekea
sp. MED297|Rep: ATP-dependent RNA helicase - Reinekea
sp. MED297
Length = 534
Score = 120 bits (289), Expect = 3e-26
Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
Frame = +2
Query: 170 KITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPI 349
K+ F DL + L A +E+ ++ S IQ +P AL G D IG A+TG+GKT AF +
Sbjct: 26 KVRFHDLFLPIALMRAIQEVGYEYCSPIQAMTLPYALAGHDCIGKAQTGTGKTAAFLITA 85
Query: 350 LQALLEN--PQRYF----ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQA 511
+ LLE+ ++Y ALIL PTRELA QI+E +AL +K A +VGGMD Q
Sbjct: 86 ITDLLEHRLEEQYVGEPRALILAPTRELALQIAEDAKALTKYSRLKVAAVVGGMDFDKQK 145
Query: 512 LML-SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L ++ I++ATPGRL+D + N K L ++ L++DEADR+L+M F
Sbjct: 146 QQLHEQRTDILVATPGRLIDFM-NRKAVFLDQIEMLIIDEADRMLDMGF 193
>UniRef50_A1U3D6 Cluster: DEAD/DEAH box helicase domain protein;
n=1; Marinobacter aquaeolei VT8|Rep: DEAD/DEAH box
helicase domain protein - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 528
Score = 120 bits (289), Expect = 3e-26
Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Frame = +2
Query: 170 KITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPI 349
+++F +LG+ + EA + ++ PS IQ ++IP L G ++G+A+TG+GKT AFALP+
Sbjct: 23 ELSFAELGLDPAVLEAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPL 82
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSK 526
L + N L+L PTRELA Q++E F + I GG D Q L +
Sbjct: 83 LSRIDANVAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGLKR 142
Query: 527 KPHIIIATPGRLVDHLENTKG-FNLRPLKYLVMDEADRILNMDF 655
+I+ TPGR++DHL KG L LK LV+DEAD +L M F
Sbjct: 143 GAQVIVGTPGRMLDHLR--KGTLKLDGLKALVLDEADEMLRMGF 184
>UniRef50_A5K9H3 Cluster: Pre-mRNA splicing factor RNA helicase PRP28,
putative; n=2; Eukaryota|Rep: Pre-mRNA splicing factor
RNA helicase PRP28, putative - Plasmodium vivax
Length = 1006
Score = 120 bits (289), Expect = 3e-26
Identities = 68/159 (42%), Positives = 98/159 (61%), Gaps = 8/159 (5%)
Frame = +2
Query: 206 LCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLE-NPQRY 382
L +A ++ K++KP+ IQ +AIP+AL +D+IG+AETGSGKT AF LP+L + + P Y
Sbjct: 592 LLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLAYVKQLPPLTY 651
Query: 383 -------FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHII 541
+ALI+ P+RELA QI ++ + + +VGG + AQA L K II
Sbjct: 652 ETSQDGPYALIIAPSRELAIQIFDETNKFASYCSCRTVAVVGGRNAEAQAFELRKGVEII 711
Query: 542 IATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
I TPGR+ D LE L Y+++DEADR+++M FE
Sbjct: 712 IGTPGRIHDCLEKAYTV-LNQCNYVILDEADRMMDMGFE 749
>UniRef50_P44701 Cluster: ATP-dependent RNA helicase srmB homolog;
n=39; Gammaproteobacteria|Rep: ATP-dependent RNA
helicase srmB homolog - Haemophilus influenzae
Length = 439
Score = 120 bits (289), Expect = 3e-26
Identities = 65/163 (39%), Positives = 98/163 (60%), Gaps = 4/163 (2%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ + L +A E+ + +P+ IQ EAIP A+ D++G A TG+GKT AF LP LQ
Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQH 65
Query: 359 LLENPQRY----FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
LL+ P+R L+LTPTRELA Q++EQ E L + A I GG+ + +
Sbjct: 66 LLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ATPGRL+ +++ + F+ R ++ L+ DEADR+L M F
Sbjct: 126 NQDLVVATPGRLLQYIKE-ENFDCRSVEMLIFDEADRMLQMGF 167
>UniRef50_Q6BML1 Cluster: Pre-mRNA-processing ATP-dependent RNA
helicase PRP5; n=4; Saccharomycetales|Rep:
Pre-mRNA-processing ATP-dependent RNA helicase PRP5 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 913
Score = 120 bits (289), Expect = 3e-26
Identities = 67/170 (39%), Positives = 96/170 (56%), Gaps = 8/170 (4%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACE-ELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPI 349
I + LG+ + E L + PS IQ +AIP + G+DIIG+A+TGSGKT +F LP+
Sbjct: 316 IRWSQLGLPSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPL 375
Query: 350 LQALLENP-----QRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQAL 514
L+ + + P LI+TPTRELA QI ++ + + GG + +Q
Sbjct: 376 LRHIQDQPPLRRGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCCFGGSSIESQIA 435
Query: 515 MLSKKPHIIIATPGRLVDHLENTKG--FNLRPLKYLVMDEADRILNMDFE 658
L K II+ TPGR++D L G NL+ + YLV+DEADR+ +M FE
Sbjct: 436 ELKKGAQIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFE 485
>UniRef50_Q11039 Cluster: Cold-shock DEAD box protein A homolog;
n=31; Bacteria|Rep: Cold-shock DEAD box protein A
homolog - Mycobacterium tuberculosis
Length = 563
Score = 120 bits (289), Expect = 3e-26
Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 1/161 (0%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF DL + + A ++ ++ P+ IQ IP + G D++GLA+TG+GKT AFA+P+L
Sbjct: 14 TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73
Query: 356 ALLENPQRYFALILTPTRELAFQISEQFEALGASIG-VKCAVIVGGMDMVAQALMLSKKP 532
+ + AL+L PTRELA Q++E F GA + + I GG Q L +
Sbjct: 74 KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+++ TPGR++DHLE +L + +LV+DEAD +L M F
Sbjct: 134 QVVVGTPGRMIDHLERAT-LDLSRVDFLVLDEADEMLTMGF 173
>UniRef50_Q12389 Cluster: ATP-dependent RNA helicase DBP10; n=10;
Saccharomycetales|Rep: ATP-dependent RNA helicase DBP10
- Saccharomyces cerevisiae (Baker's yeast)
Length = 995
Score = 120 bits (289), Expect = 3e-26
Identities = 68/200 (34%), Positives = 113/200 (56%), Gaps = 2/200 (1%)
Frame = +2
Query: 65 EKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKP 244
E + K GD+ +D E T N+ E T+ K +F G+ ++ + +++P
Sbjct: 104 ENNASGKTQTGDD--EDDVNEYFSTNNL-EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQP 160
Query: 245 SKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRY--FALILTPTRELA 418
+ IQ++ IP+ L +DI+G+A TGSGKT AF LP+++ L + + A+IL+P+RELA
Sbjct: 161 TPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELA 220
Query: 419 FQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNL 598
Q F+ ++ ++ GG + Q M+ P +IIATPGR + HL+ +L
Sbjct: 221 MQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFL-HLKVEMNLDL 279
Query: 599 RPLKYLVMDEADRILNMDFE 658
+ ++Y+V DEADR+ M F+
Sbjct: 280 KSVEYVVFDEADRLFEMGFQ 299
>UniRef50_Q8D7D0 Cluster: Superfamily II DNA and RNA helicase; n=20;
Gammaproteobacteria|Rep: Superfamily II DNA and RNA
helicase - Vibrio vulnificus
Length = 418
Score = 120 bits (288), Expect = 4e-26
Identities = 68/166 (40%), Positives = 99/166 (59%), Gaps = 6/166 (3%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
TF +LG+ L + +L + P+ IQ++AIP L G+D++ A+TG+GKT A+ LP++Q
Sbjct: 4 TFIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQ 63
Query: 356 ALLEN------PQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 517
L P+ ALIL PTRELA Q+ + + + + GG + Q
Sbjct: 64 MLSRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQ 123
Query: 518 LSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L+K I+IATPGRL+DHL TK +L L+ LV+DEADR+L+M F
Sbjct: 124 LAKGVDILIATPGRLLDHL-FTKKTSLNQLQMLVLDEADRMLDMGF 168
>UniRef50_Q8A2K2 Cluster: ATP-dependent RNA helicase; n=10; cellular
organisms|Rep: ATP-dependent RNA helicase - Bacteroides
thetaiotaomicron
Length = 647
Score = 120 bits (288), Expect = 4e-26
Identities = 70/163 (42%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGK--DIIGLAETGSGKTGAFALPI 349
TF++LGV + +A EE+ ++ P +Q+E IP LLG+ D++ LA+TG+GKT AF LP+
Sbjct: 3 TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPY-LLGENNDVVALAQTGTGKTAAFGLPL 61
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSK 526
LQ + + +LIL PTREL QI+ I G+K + GG + +Q L +
Sbjct: 62 LQQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLKR 121
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
HII+ATPGRL+D +E K +L + +VMDEAD +LNM F
Sbjct: 122 GVHIIVATPGRLLDLMER-KTVSLSTVHNIVMDEADEMLNMGF 163
>UniRef50_Q2BMZ1 Cluster: ATP-dependent RNA helicase; n=1;
Neptuniibacter caesariensis|Rep: ATP-dependent RNA
helicase - Neptuniibacter caesariensis
Length = 417
Score = 120 bits (288), Expect = 4e-26
Identities = 70/167 (41%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F LG+ D L +K+P+ IQ +AIP L G D+I AETGSGKT F LP+L
Sbjct: 1 MSFVSLGLSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLL 60
Query: 353 QALLENP----QRYFALILTPTRELAFQISEQFEALGASI--GVKCAVIVGGMDMVAQAL 514
+ L P AL+L PTRELA Q+S+ + + ++ I GG + Q
Sbjct: 61 EKLHSIPAPGNNLTHALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQ 120
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
LSK I++ATPGRL+D L +LR LK LV+DEADR+L++ F
Sbjct: 121 SLSKGCDIVVATPGRLLD-LMRKNALDLRGLKALVLDEADRMLDLGF 166
>UniRef50_Q5T1V6 Cluster: Probable ATP-dependent RNA helicase DDX59;
n=34; Euteleostomi|Rep: Probable ATP-dependent RNA
helicase DDX59 - Homo sapiens (Human)
Length = 619
Score = 120 bits (288), Expect = 4e-26
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
I F+ + +VL ++ ++ P+ IQ + IPV LLG+DI+ A+TGSGKT AF LP++
Sbjct: 203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKK 529
L + ALILTPTRELA QI Q + L + + +K ++VGG+ + Q L +
Sbjct: 263 MRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQH 322
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+IIATPGRL+D ++ + L +K +V+DEAD +L M F+
Sbjct: 323 VKVIIATPGRLLDIIKQS-SVELCGVKIVVVDEADTMLKMGFQ 364
>UniRef50_UPI00015B5D7B Cluster: PREDICTED: similar to LD28101p;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
LD28101p - Nasonia vitripennis
Length = 782
Score = 119 bits (287), Expect = 5e-26
Identities = 69/199 (34%), Positives = 109/199 (54%), Gaps = 7/199 (3%)
Frame = +2
Query: 80 DKESYGDETNQDSEVEQTPT---ENVNEDTEDDKIT--FKDLGVVDVLCEACEELKWKKP 244
D E Y D N D + E+ EN + + + F+ +G+ + + +K P
Sbjct: 2 DVEEYADPRNSDEDDEEENNIIKENKKKAGKKSNKSGGFQSMGLSQSVIRGILKRGYKIP 61
Query: 245 SKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFA--LILTPTRELA 418
+ IQ++ IP+AL G+D++ +A TGSGKT F +P+ + L + A LIL+PTRELA
Sbjct: 62 TPIQRKTIPIALDGRDVVAMARTGSGKTACFLIPMFEKLKTRQAKTGARALILSPTRELA 121
Query: 419 FQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNL 598
Q + +G G+K +VI+GG M Q + P II+ATPGR + H+ NL
Sbjct: 122 LQTQRFIKEIGRFTGLKSSVILGGDSMDNQFSAIHGNPDIIVATPGRFL-HICIEMDMNL 180
Query: 599 RPLKYLVMDEADRILNMDF 655
+ +++++ DEADR+ M F
Sbjct: 181 KSIEFVIFDEADRLFEMGF 199
>UniRef50_Q87HW1 Cluster: ATP-dependent RNA helicase, DEAD box
family; n=6; Vibrio|Rep: ATP-dependent RNA helicase,
DEAD box family - Vibrio parahaemolyticus
Length = 421
Score = 119 bits (287), Expect = 5e-26
Identities = 65/163 (39%), Positives = 94/163 (57%), Gaps = 2/163 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+ F DLG+ L E + P+ +Q+++IP L GKD++ A+TG+GKT AF LPI+
Sbjct: 7 VNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPII 66
Query: 353 QALLENPQR--YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
QA+ + + ALIL PTRELA Q+ + ++ + GG + Q L +
Sbjct: 67 QAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEE 126
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I+IATPGRL+DHL N N+ LV+DEADR+L+M F
Sbjct: 127 GADILIATPGRLLDHLFN-GNVNISKTGVLVLDEADRMLDMGF 168
>UniRef50_A6TTG0 Cluster: DEAD/DEAH box helicase domain protein;
n=3; Clostridiaceae|Rep: DEAD/DEAH box helicase domain
protein - Alkaliphilus metalliredigens QYMF
Length = 549
Score = 119 bits (287), Expect = 5e-26
Identities = 67/162 (41%), Positives = 93/162 (57%)
Frame = +2
Query: 170 KITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPI 349
K F LG+ + + + +P+ +Q +AIP L +D++ A+TG+GKT AF LPI
Sbjct: 2 KNKFAKLGISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPI 61
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
L+ + ALI+TPTRELA QI+ + + L G+ GG D+ Q L
Sbjct: 62 LERVNVEKPTIQALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKLKGS 121
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
HIII TPGRL+DHL K NL L LV+DEAD++L+M F
Sbjct: 122 IHIIIGTPGRLLDHLRR-KTINLGKLSMLVLDEADQMLHMGF 162
>UniRef50_A2TP65 Cluster: ATP-dependent RNA helicase, DEAD/DEAH box
family protein; n=13; Bacteroidetes|Rep: ATP-dependent
RNA helicase, DEAD/DEAH box family protein - Dokdonia
donghaensis MED134
Length = 638
Score = 119 bits (287), Expect = 5e-26
Identities = 64/163 (39%), Positives = 100/163 (61%), Gaps = 2/163 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALL-GKDIIGLAETGSGKTGAFALPI 349
+TF LG+ L +A ++ ++ PSKIQ+EAIP L +D++ LA+TG+GKT AF P+
Sbjct: 1 MTFDQLGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPL 60
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSK 526
LQ + + + LI+ PTREL QI+ + + I GV+ + GG ++ QA +S+
Sbjct: 61 LQNIDASSKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGSNIQEQAREISR 120
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I++ATPGR+ D + + ++ L Y V+DEAD +LNM F
Sbjct: 121 GAQIVVATPGRMQDMMRR-RMVDITKLSYCVLDEADEMLNMGF 162
>UniRef50_A0RUV7 Cluster: Superfamily II helicase; n=3;
Thermoprotei|Rep: Superfamily II helicase - Cenarchaeum
symbiosum
Length = 434
Score = 119 bits (287), Expect = 5e-26
Identities = 62/159 (38%), Positives = 99/159 (62%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F++LG+ + +A ++ ++K IQ+ AIPV L G+D++G A TG+GKTGA+++ +LQ
Sbjct: 4 FEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISMLQE 63
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
+ E LI+ PTRELA QI+E+ + V+ I GG M Q L + I
Sbjct: 64 IKEG-GGIQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQLDALKRGAEI 122
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++ATPGRL+DH++ ++ + +LV+DEAD +L+M F
Sbjct: 123 LVATPGRLIDHIKR-GSISIDRVTHLVLDEADTMLDMGF 160
>UniRef50_UPI0000D5571E Cluster: PREDICTED: similar to CG5800-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG5800-PA - Tribolium castaneum
Length = 770
Score = 119 bits (286), Expect = 7e-26
Identities = 65/165 (39%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F DL + + +E + KP+ IQ+E I + L GKDI+G A+TGSGKT AF +PIL+
Sbjct: 52 SFDDLPLSPKTLKGLKECGYTKPTDIQRETIKLGLTGKDILGAAQTGSGKTLAFLIPILE 111
Query: 356 ALL----ENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
L AL++TPTRELA+QI E+ +G +I+GG D+ + +
Sbjct: 112 RLYCKQWTRLDGLGALVITPTRELAYQIFEELRRVGEHHEFSAGLIIGGKDLKFERNRMD 171
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+ +I+I TPGR++ H++ F+ ++ LV+DEADR L+M FE
Sbjct: 172 -QCNIVIGTPGRILQHMDENPLFDCVNMEILVLDEADRCLDMGFE 215
>UniRef50_UPI0000ECBDA5 Cluster: ATP-dependent RNA helicase DDX24
(EC 3.6.1.-) (DEAD box protein 24).; n=2; Gallus
gallus|Rep: ATP-dependent RNA helicase DDX24 (EC
3.6.1.-) (DEAD box protein 24). - Gallus gallus
Length = 625
Score = 119 bits (286), Expect = 7e-26
Identities = 76/196 (38%), Positives = 112/196 (57%), Gaps = 19/196 (9%)
Frame = +2
Query: 113 DSEVEQTPTENVNEDTED--DKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG 286
D +V+ TE ++ T+ D +KDL V + +A L + P+ IQ +P A+
Sbjct: 60 DKKVKNWTTEVLSTSTDHKADVSAWKDLFVPQPVLKALSSLGFSAPTPIQALTLPSAIRD 119
Query: 287 K-DIIGLAETGSGKTGAFALPILQALLENPQR--------------YFALILTPTRELAF 421
DI+G AETGSGKT AFA+P++ ++LE Q L+LTPTRELA
Sbjct: 120 NMDILGAAETGSGKTLAFAIPMIHSVLEWQQSNNKEHTVGLHKKRPLLGLVLTPTRELAV 179
Query: 422 QISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGF--N 595
Q+ +A+ G+K A++VGGM Q +L++KP I+IATPGRL + ++ N
Sbjct: 180 QVKHHIDAVAKFTGIKTAILVGGMAAQKQERVLNRKPEIVIATPGRLWELIKERHPHLSN 239
Query: 596 LRPLKYLVMDEADRIL 643
LR L+ LV+DEADR++
Sbjct: 240 LRQLRCLVIDEADRMV 255
>UniRef50_Q9KLE2 Cluster: ATP-dependent RNA helicase DeaD; n=35;
Vibrionales|Rep: ATP-dependent RNA helicase DeaD -
Vibrio cholerae
Length = 663
Score = 119 bits (286), Expect = 7e-26
Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 1/166 (0%)
Frame = +2
Query: 161 EDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFA 340
+D I F DL + + A E+ + P+ IQ AIPV L G+D +G A+TG+GKT AF+
Sbjct: 22 QDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFS 81
Query: 341 LPILQALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALM 517
LP+L L + + A+++ PTRELA Q++ + + LG +I G+K I GG ++ Q
Sbjct: 82 LPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRA 141
Query: 518 LSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L HI++ TPGR+ D + + +L ++DEAD +L M F
Sbjct: 142 LKSGAHIVVGTPGRVKDLITRDR-LHLDECHTFILDEADEMLKMGF 186
>UniRef50_Q5QY63 Cluster: ATP-dependent RNA helicase; n=3;
Alteromonadales|Rep: ATP-dependent RNA helicase -
Idiomarina loihiensis
Length = 594
Score = 119 bits (286), Expect = 7e-26
Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F D+ + + E +++ P+ IQ +AIP L G+D++G A+TG+GKT AF LP L
Sbjct: 8 LSFNDMALPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPAL 67
Query: 353 QALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALMLSKK 529
+ + ++ L++TPTRELA Q++E E A + GV A + GG Q L +
Sbjct: 68 AKIDASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKALKQG 127
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I++ TPGRL+D L N L LK V+DEAD +LNM F
Sbjct: 128 TAIVVGTPGRLID-LLNKNVLQLDGLKVGVLDEADEMLNMGF 168
>UniRef50_Q5NML9 Cluster: DNA and RNA helicase; n=28;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Zymomonas mobilis
Length = 458
Score = 119 bits (286), Expect = 7e-26
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Frame = +2
Query: 164 DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFAL 343
+ ++FK LG+ L +A + L + KP+ IQ +AIP L GKD+ G+A+TG+GKT AFAL
Sbjct: 3 ETSVSFKTLGLDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFAL 62
Query: 344 PILQALLENPQR-----YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQ 508
P + L NPQ LIL+PTRELA QI+ + + + GG+ + Q
Sbjct: 63 PSIHYLATNPQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQ 122
Query: 509 ALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
ML + I++ATPGRL+D L + + L+ ++ V+DEAD++L++ F
Sbjct: 123 MRMLDRGTDILVATPGRLLD-LIDQRALVLKDVEVFVLDEADQMLDLGF 170
>UniRef50_A7JLA3 Cluster: ATP-dependent RNA helicase; n=20;
Francisella|Rep: ATP-dependent RNA helicase -
Francisella tularensis subsp. novicida GA99-3548
Length = 569
Score = 119 bits (286), Expect = 7e-26
Identities = 68/174 (39%), Positives = 105/174 (60%), Gaps = 4/174 (2%)
Frame = +2
Query: 146 VNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGK 325
+N +T+ D F LG+ + + +L ++ P+ IQ+ AIP L G+D++G A+TG+GK
Sbjct: 1 MNSETKKD---FSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGK 57
Query: 326 TGAFALPIL--QALLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMD 496
T AFALP++ L + L+L PTRELA Q++EQFEA ++ + A I GG +
Sbjct: 58 TAAFALPLINNMDLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQE 117
Query: 497 MVAQALMLSKKPHIIIATPGRLVDHLENTKG-FNLRPLKYLVMDEADRILNMDF 655
+Q L + +++ T GR++DH+E KG L L+ LV+DEAD +L M F
Sbjct: 118 YGSQIRALKQGVKVVVGTTGRVMDHIE--KGTLQLDNLRALVLDEADEMLRMGF 169
>UniRef50_A3WD13 Cluster: DNA and RNA helicase; n=2;
Alphaproteobacteria|Rep: DNA and RNA helicase -
Erythrobacter sp. NAP1
Length = 484
Score = 119 bits (286), Expect = 7e-26
Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 5/164 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F DLG+ + +A + + P+ IQ++AIP L G+D++G+A+TG+GKT AF LP +
Sbjct: 4 FSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 359 LLENPQRY-----FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
L E R L+L PTREL QI+ + GA G+K IVGG + L
Sbjct: 64 LREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKLH 123
Query: 524 KKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+ I+IATPGRL+D L + K FNL ++ LV+DEAD++L++ F
Sbjct: 124 RGTDILIATPGRLLD-LIDQKAFNLGSVEVLVLDEADQMLDLGF 166
>UniRef50_A2FYU9 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 633
Score = 119 bits (286), Expect = 7e-26
Identities = 72/202 (35%), Positives = 116/202 (57%), Gaps = 5/202 (2%)
Frame = +2
Query: 65 EKMTADKESYGDETNQDSE-VEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKK 241
E+ +++++ DE + +E + Q N + D+ F L +++ ++ E+ K+ K
Sbjct: 14 EEKQKERKAFDDEVDSINERLNQIAHNNYIDPGMTDE--FSSLPILESTKKSLEKSKFTK 71
Query: 242 PSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL----LENPQRYFALILTPTR 409
S IQK+ + L G+DIIG AETGSGKT AF +PI+++L A+I++PTR
Sbjct: 72 MSPIQKQTLLYTLCGRDIIGAAETGSGKTLAFCIPIVESLKKAKFSKMSGIGAIIISPTR 131
Query: 410 ELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKG 589
+LA Q + + L + +I GGMD + LS+ +III T GRL +H+E T
Sbjct: 132 DLAAQTFDVLKKLIKDTDISAGLITGGMDFEMEQEGLSRL-NIIICTMGRLKEHMETTST 190
Query: 590 FNLRPLKYLVMDEADRILNMDF 655
FN L+ LV+DEAD+++N +F
Sbjct: 191 FNADHLQILVLDEADKLMNKEF 212
>UniRef50_A2XVF7 Cluster: DEAD-box ATP-dependent RNA helicase 13;
n=2; Oryza sativa|Rep: DEAD-box ATP-dependent RNA
helicase 13 - Oryza sativa subsp. indica (Rice)
Length = 832
Score = 119 bits (286), Expect = 7e-26
Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 26/220 (11%)
Frame = +2
Query: 62 LEKMTADKESYGDETNQDSEVEQTPTENVNEDT---EDDKITFKDLGVVDVLCEACEELK 232
+E+ KE D+ +D + ++ N+ ED+ +++L + +L A L
Sbjct: 158 MEEKMESKEDVSDDNVEDMQDGNDMEQDNNDGLILGEDEVYAWRELRLHPLLITAVRRLG 217
Query: 233 WKKPSKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQALLENPQRYF-------- 385
+K+P+ IQK P A GKD+IG AETGSGKT AF LPILQ LLE ++
Sbjct: 218 FKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDES 277
Query: 386 ------------ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
ALILTPTRELA Q+ + + + ++ IVGG+ M Q +L +K
Sbjct: 278 TQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRK 337
Query: 530 PHIIIATPGRLVDHLE--NTKGFNLRPLKYLVMDEADRIL 643
P I++ TPGRL + + N L L + V+DEADR++
Sbjct: 338 PEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMI 377
>UniRef50_Q80Y44 Cluster: Probable ATP-dependent RNA helicase DDX10;
n=14; Eutheria|Rep: Probable ATP-dependent RNA helicase
DDX10 - Mus musculus (Mouse)
Length = 875
Score = 119 bits (286), Expect = 7e-26
Identities = 68/175 (38%), Positives = 106/175 (60%), Gaps = 4/175 (2%)
Frame = +2
Query: 143 NVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSG 322
NVNE T F D + + +E +++ ++IQK+ I +AL GKD++G A+TGSG
Sbjct: 64 NVNEITR-----FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSG 118
Query: 323 KTGAFALPILQALLE----NPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGG 490
KT AF +P+L+AL + LI++PTRELA+Q E +G + +I+GG
Sbjct: 119 KTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGG 178
Query: 491 MDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
D+ +A ++ +I++ TPGRL+ H++ T F+ L+ LV+DEADRIL+M F
Sbjct: 179 KDLKHEAERIN-NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGF 232
>UniRef50_Q2H2J1 Cluster: ATP-dependent RNA helicase DBP4; n=14;
Pezizomycotina|Rep: ATP-dependent RNA helicase DBP4 -
Chaetomium globosum (Soil fungus)
Length = 825
Score = 119 bits (286), Expect = 7e-26
Identities = 62/164 (37%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F DL + + ++ + +Q+ AIP+AL G+DI+G A+TGSGKT AF +P+L+
Sbjct: 55 FTDLPLCEATASGLRASHFEVLTDVQRAAIPLALKGRDILGAAKTGSGKTLAFLVPVLEK 114
Query: 359 LLENPQRYF----ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
L + ALI++PTRELA QI E +G + +++GG + +A L +
Sbjct: 115 LYHAKWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHFFSAGLVIGGKSLKEEAERLGR 174
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+I++ TPGR++ HL+ T F++ L+ LV+DEADRI++M F+
Sbjct: 175 M-NILVCTPGRMLQHLDQTANFDVNNLQILVLDEADRIMDMGFQ 217
>UniRef50_Q1MY97 Cluster: DEAD/DEAH box helicase-like protein; n=2;
Gammaproteobacteria|Rep: DEAD/DEAH box helicase-like
protein - Oceanobacter sp. RED65
Length = 614
Score = 118 bits (285), Expect = 9e-26
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F LG+ L A EE +++PS IQ+++IP L GKD++GLA+TG+GKT AF LP+L
Sbjct: 8 FASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPLLAR 67
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGA-SIGVKCAVIVGGMDMVAQALMLSKKPH 535
+ L+L PTRELA Q++ E+ VK A I GG D +Q L + P
Sbjct: 68 TQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQGPQ 127
Query: 536 IIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
++ TPGR++DH+ L ++ +V+DEAD +L M F
Sbjct: 128 WVVGTPGRVMDHIRRGT-LKLEGIRAVVLDEADEMLRMGF 166
>UniRef50_Q17JB5 Cluster: DEAD box ATP-dependent RNA helicase; n=4;
Eukaryota|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 699
Score = 118 bits (285), Expect = 9e-26
Identities = 70/166 (42%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL-- 352
F+ G+ D + E + + KP+ IQ + +P+AL G+D++G+A+TGSGKT A+ P L
Sbjct: 124 FEQGGLPDYILEEANKQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYIAPALVH 183
Query: 353 ---QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLS 523
Q L AL+L PTRELA QI + G I + GG Q L
Sbjct: 184 ITHQDQLRRGDGPIALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRDLE 243
Query: 524 KKPHIIIATPGRLVDHLENTKGF-NLRPLKYLVMDEADRILNMDFE 658
+ I+IATPGRL+D LE +G NLR YLV+DEADR+L+M FE
Sbjct: 244 RGAEIVIATPGRLIDFLE--RGITNLRRCTYLVLDEADRMLDMGFE 287
>UniRef50_Q17II7 Cluster: DEAD box ATP-dependent RNA helicase; n=1;
Aedes aegypti|Rep: DEAD box ATP-dependent RNA helicase -
Aedes aegypti (Yellowfever mosquito)
Length = 639
Score = 118 bits (285), Expect = 9e-26
Identities = 68/173 (39%), Positives = 102/173 (58%), Gaps = 5/173 (2%)
Frame = +2
Query: 155 DTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGA 334
D D +TF+++G + + ++ P+ IQ + P+A+ G+D++G+A+TGSGKT +
Sbjct: 81 DVPDPALTFEEVGFPAEIADEWRYAEFTTPTPIQSQGWPIAMSGRDMVGIAKTGSGKTLS 140
Query: 335 FALPIL-----QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDM 499
+ LP L Q+ L ALIL PTRELA QI + + G ++ +K + GG
Sbjct: 141 YLLPALMHIDQQSRLRRGDGPIALILAPTRELAQQIKQVTDDFGRAMKIKNTCLFGGGAK 200
Query: 500 VAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
Q L I+IATPGRL+D L +++ NLR YLV+DEADR+L+M FE
Sbjct: 201 RQQGDDLKYGVEIVIATPGRLIDFL-SSEHTNLRRCSYLVLDEADRMLDMGFE 252
>UniRef50_A2DES1 Cluster: DEAD/DEAH box helicase family protein;
n=1; Trichomonas vaginalis G3|Rep: DEAD/DEAH box
helicase family protein - Trichomonas vaginalis G3
Length = 640
Score = 118 bits (285), Expect = 9e-26
Identities = 68/166 (40%), Positives = 102/166 (61%), Gaps = 4/166 (2%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+ + D G+ L +K+P+ IQ +AIP L G+DIIG A TGSGKT AF +P L
Sbjct: 101 VNWTDCGLPAPLMSHLRLRGFKQPTSIQCQAIPCILSGRDIIGCAVTGSGKTLAFIIPCL 160
Query: 353 QALLENPQ--RY--FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
+L P +Y A+IL+PTRELA+Q + + + + + K A +VGG D+ Q +
Sbjct: 161 LHVLAQPPTGQYEAAAVILSPTRELAYQTHIECQKIFSLMDKKSACLVGGNDIENQLRAI 220
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
++IIATPGR +D L ++ FN++ + YLV+DEADR+ ++ FE
Sbjct: 221 KNGSNVIIATPGRFID-LLSSSAFNIKKVSYLVIDEADRMFDLGFE 265
>UniRef50_P25888 Cluster: Putative ATP-dependent RNA helicase rhlE;
n=122; cellular organisms|Rep: Putative ATP-dependent
RNA helicase rhlE - Escherichia coli (strain K12)
Length = 454
Score = 118 bits (285), Expect = 9e-26
Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 6/167 (3%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F LG+ + A E +++P+ IQ++AIP L G+D++ A+TG+GKT F LP+L
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 353 QALL------ENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQAL 514
Q L+ + + ALILTPTRELA QI E + ++ V+ GG+ + Q +
Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
Query: 515 MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L +++ATPGRL+D LE+ L ++ LV+DEADR+L+M F
Sbjct: 121 KLRGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGF 166
>UniRef50_Q6C835 Cluster: ATP-dependent RNA helicase DBP7; n=1;
Yarrowia lipolytica|Rep: ATP-dependent RNA helicase DBP7
- Yarrowia lipolytica (Candida lipolytica)
Length = 799
Score = 118 bits (285), Expect = 9e-26
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 10/198 (5%)
Frame = +2
Query: 95 GDETNQDSEVEQTPTENVNEDTE--DDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAI 268
G++ + E E+ N D TF LG L +A ++ KP+KIQ+ I
Sbjct: 205 GEDVQMEDEEEEEAENNAESSNAALKDSTTFSGLGCSQRLVDALVGMQLAKPTKIQRATI 264
Query: 269 PVALLG-KDIIGLAETGSGKTGAFALPILQALL--ENPQR---YFALILTPTRELAFQIS 430
P + +D+ A+TGSGKT AF LP+L+ ++ ++ R FA+ILTPTREL QI
Sbjct: 265 PRLIQRERDLFVQAQTGSGKTLAFVLPVLERIMSCDDVSRETGLFAVILTPTRELTTQIY 324
Query: 431 EQFEAL--GASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRP 604
E L A + +++GG ++ + K +I++ATPGRL DH +NT+ +L
Sbjct: 325 SVLETLCRKACPWIVPGIVIGGEKKKSEKARIRKGVNILVATPGRLADHFDNTEALDLSQ 384
Query: 605 LKYLVMDEADRILNMDFE 658
++++V+DE DR++ + FE
Sbjct: 385 VRWVVLDEGDRLMELGFE 402
>UniRef50_Q09719 Cluster: ATP-dependent RNA helicase dbp10; n=2;
Schizosaccharomyces pombe|Rep: ATP-dependent RNA
helicase dbp10 - Schizosaccharomyces pombe (Fission
yeast)
Length = 848
Score = 118 bits (285), Expect = 9e-26
Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 3/162 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ +G+ L A + +K P+ IQ++ IP+ L G+D++G+A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 359 L---LENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
L L N ALIL+P RELA Q + + ++ IVGG+ + Q +LS K
Sbjct: 131 LKSTLANSNTR-ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGK 189
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
P I++ATPGR + HL+ L ++Y+V DEADR+ M F
Sbjct: 190 PDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGF 230
>UniRef50_Q4SJI2 Cluster: Chromosome 4 SCAF14575, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 4 SCAF14575, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 532
Score = 118 bits (284), Expect = 1e-25
Identities = 73/185 (39%), Positives = 106/185 (57%), Gaps = 5/185 (2%)
Frame = +2
Query: 116 SEVEQTPTENVNEDTEDDKIT--FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGK 289
S+VE E V + K + F+ +G+ + + +K P+ IQ++ IPV L GK
Sbjct: 16 SDVEPDTREMVRAQNKKKKKSGGFQSMGLSFPVFKGVMRKGYKVPTPIQRKTIPVILDGK 75
Query: 290 DIIGLAETGSGKTGAFALPILQALLENPQRYF---ALILTPTRELAFQISEQFEALGASI 460
D++ +A TGSGKT AF +P+ + L + PQ ALIL+PTRELA Q + + LG
Sbjct: 76 DVVAMARTGSGKTAAFLIPMFERL-KAPQAQTGARALILSPTRELALQTMKFTKELGKFT 134
Query: 461 GVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRI 640
+K A+I+GG M Q L + P III TPGRL+ H+ L+ ++Y+V DEADR+
Sbjct: 135 KLKTALILGGDSMDDQFAALHENPDIIIGTPGRLM-HVIKEMNLKLQNVEYVVFDEADRL 193
Query: 641 LNMDF 655
M F
Sbjct: 194 FEMGF 198
>UniRef50_Q82T78 Cluster: RhlE; ATP-dependent RNA helicase RhlE;
n=3; Nitrosomonadaceae|Rep: RhlE; ATP-dependent RNA
helicase RhlE - Nitrosomonas europaea
Length = 498
Score = 118 bits (284), Expect = 1e-25
Identities = 67/169 (39%), Positives = 97/169 (57%), Gaps = 8/169 (4%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
+TF LG+ + A + + P+ IQ + IP L GKD++ A+TG+GKT F LP+L
Sbjct: 5 VTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLL 64
Query: 353 QALLE------NPQRY--FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQ 508
L +P R+ ALI+ PTRELA QI E G + ++ AV+ GG+++ Q
Sbjct: 65 YRLQAYANTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQ 124
Query: 509 ALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
L I++ATPGRL+D +E K N + LV+DEADR+L+M F
Sbjct: 125 IAALQAGVEILVATPGRLLDLVEQ-KAVNFSKTEILVLDEADRMLDMGF 172
>UniRef50_A0C015 Cluster: Chromosome undetermined scaffold_14, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_14,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 532
Score = 118 bits (284), Expect = 1e-25
Identities = 66/164 (40%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
I +KD + L + + +P+ IQ P+ + G D+IG+A+TGSGKT A+ LP L
Sbjct: 71 IEWKDCQFPNQLNKRISLKAYNRPTPIQASVFPIIMSGHDLIGIAQTGSGKTIAYLLPGL 130
Query: 353 QALLENPQRY--FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
+ ++ LIL PTRELA QI E + + A I GG D Q + L++
Sbjct: 131 VHIESQRKKGGPMMLILVPTRELAMQIQEHISYFSEAYNMNSACIYGGADKRPQEMALAR 190
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
P I++ATPGRL+D L+ + NL + YLV+DEADR+L+M FE
Sbjct: 191 DPDIVVATPGRLIDFLD-AQVTNLHNVTYLVLDEADRMLDMGFE 233
>UniRef50_Q6C024 Cluster: Pre-mRNA-splicing ATP-dependent RNA
helicase PRP28; n=1; Yarrowia lipolytica|Rep:
Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 -
Yarrowia lipolytica (Candida lipolytica)
Length = 575
Score = 118 bits (284), Expect = 1e-25
Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 8/160 (5%)
Frame = +2
Query: 203 VLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQ-- 376
++ + + +K+P+ IQ+ AIP+AL +D+IG+AETGSGKT +F +P++ + E P+
Sbjct: 173 IVRDTISRMGYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIPLISYICELPKLD 232
Query: 377 ------RYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
+ LIL PTRELA QI ++ A +G K +VGG QAL + + +
Sbjct: 233 ERSKVNGPYGLILAPTRELAMQIKDEAVKFCAPLGFKVVSVVGGYSAQEQALAVQEGAEL 292
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
I+ATPGRL+D ++ + L Y+VMDEADR+++M FE
Sbjct: 293 IVATPGRLLDVIDR-RLLVLNQCCYVVMDEADRMVDMGFE 331
>UniRef50_A5DAR2 Cluster: ATP-dependent RNA helicase DBP7; n=2;
Pichia guilliermondii|Rep: ATP-dependent RNA helicase
DBP7 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 747
Score = 118 bits (284), Expect = 1e-25
Identities = 69/170 (40%), Positives = 101/170 (59%), Gaps = 10/170 (5%)
Frame = +2
Query: 179 FKDLGVVDVLCE-ACEELKWKKPSKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPIL 352
F LG+ D L E L++K P++IQK IP L +D+ A+TGSGKT +F LPIL
Sbjct: 137 FNGLGLNDNLVHHLTESLRFKNPTQIQKSVIPSLLSTSRDLFVKAQTGSGKTLSFLLPIL 196
Query: 353 QALLE---NP----QRYFALILTPTRELAFQISEQFEALG-ASIGVKCAVIVGGMDMVAQ 508
L++ NP FA++L PTRELA QI E L + +++GG ++
Sbjct: 197 HKLMQEKKNPITRESGVFAIVLVPTRELANQIYGVLETLTRCHHQIVPGIVIGGEKKKSE 256
Query: 509 ALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+ K +I++ATPGRL DH+ENT +L L+YL++DE DR++++ FE
Sbjct: 257 KARIRKGVNILVATPGRLADHIENTTSLDLSQLRYLILDEGDRLIDLGFE 306
>UniRef50_P20447 Cluster: ATP-dependent RNA helicase DBP3; n=20;
Ascomycota|Rep: ATP-dependent RNA helicase DBP3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 523
Score = 118 bits (284), Expect = 1e-25
Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Frame = +2
Query: 230 KWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQR--YFALILTP 403
K+ KP+ IQ A P L GKD++G+AETGSGKT AF +P + L+ + ++ L+++P
Sbjct: 131 KFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISP 190
Query: 404 TRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENT 583
TRELA QI + L +G++C + GG+ Q + L KK +++ATPGRL+D L+
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQL-KKSQVVVATPGRLLDLLQE- 248
Query: 584 KGFNLRPLKYLVMDEADRILNMDFE 658
+L + YLV+DEADR+L FE
Sbjct: 249 GSVDLSQVNYLVLDEADRMLEKGFE 273
>UniRef50_Q5BFU7 Cluster: ATP-dependent RNA helicase dbp10; n=14;
Pezizomycotina|Rep: ATP-dependent RNA helicase dbp10 -
Emericella nidulans (Aspergillus nidulans)
Length = 936
Score = 118 bits (284), Expect = 1e-25
Identities = 62/161 (38%), Positives = 99/161 (61%), Gaps = 2/161 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ +G+ L +A + P+ IQ++ IPV + +D++G+A TGSGKT AF +P+++
Sbjct: 93 FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152
Query: 359 LLENPQRYFA--LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKP 532
L + ++ A LIL+P+RELA Q + + LG +K ++VGG + Q M++ P
Sbjct: 153 LKSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNP 212
Query: 533 HIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
I+IATPGR + HL+ +L +KY+V DEADR+ M F
Sbjct: 213 DIVIATPGRFL-HLKVEMNLDLSSIKYVVFDEADRLFEMGF 252
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,602,300
Number of Sequences: 1657284
Number of extensions: 14926525
Number of successful extensions: 62063
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 53022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59663
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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