Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28d01
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 257 1e-69
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 165 7e-42
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 138 9e-34
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 135 5e-33
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 132 3e-32
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 121 8e-29
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 120 2e-28
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 118 6e-28
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 116 3e-27
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 112 4e-26
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 109 3e-25
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 108 6e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 107 1e-24
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 106 3e-24
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 98 9e-22
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 97 3e-21
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 95 6e-21
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 93 2e-20
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 92 6e-20
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 87 2e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 87 3e-18
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 80 3e-16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 75 9e-15
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 37 0.003
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 32 0.063
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.084
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 30 0.26
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 30 0.34
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 30 0.34
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 28 1.0
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.4
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 28 1.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 28 1.4
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.4
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 3.1
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 27 3.1
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 4.2
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 25 7.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 7.3
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 7.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 7.3
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 25 7.3
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 7.3
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 9.6
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 9.6
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 9.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 25 9.6
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 257 bits (629), Expect = 1e-69
Identities = 121/201 (60%), Positives = 160/201 (79%), Gaps = 4/201 (1%)
Frame = +2
Query: 65 EKMTADKE--SYGDETNQDSEVEQTPTENVNEDTEDDKI--TFKDLGVVDVLCEACEELK 232
+K+T DK+ S + + + +EN N D+++++ TFK+LGV+D LCEACE+L
Sbjct: 6 KKLTEDKKNSSLNKKIETSNSSSEKSSENNNGDSQNNEAPKTFKELGVIDELCEACEKLG 65
Query: 233 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRE 412
+K P+ IQ+EAIPV L +D+IGLA+TGSGKT AFALP++Q L NP +FA++L PTRE
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRE 125
Query: 413 LAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGF 592
LA+QISEQFEA+G SIGV+ VIVGGMDMV QA+ LSKKPH+++ TPGRL+DHLENTKGF
Sbjct: 126 LAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGF 185
Query: 593 NLRPLKYLVMDEADRILNMDF 655
+L+ LKYL+MDEADR+L+MDF
Sbjct: 186 SLKNLKYLIMDEADRLLDMDF 206
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 165 bits (400), Expect = 7e-42
Identities = 85/169 (50%), Positives = 118/169 (69%), Gaps = 3/169 (1%)
Frame = +2
Query: 158 TEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAF 337
+E + +F DLG+ L + + L +P+ IQ+ I L G++ IG A+TGSGKT AF
Sbjct: 2 SEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAF 61
Query: 338 ALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 517
ALPI++ ++P FALILTPTRELA QI EQF ALGA++ +K A+IVGGMDM+ Q++
Sbjct: 62 ALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSID 121
Query: 518 LSKKPHIIIATPGRLVDHLENTKG---FNLRPLKYLVMDEADRILNMDF 655
LSK+PH+++ATPGRL D + + LR +K+LVMDEADR+L+ F
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 138 bits (333), Expect = 9e-34
Identities = 82/209 (39%), Positives = 128/209 (61%), Gaps = 5/209 (2%)
Frame = +2
Query: 47 QNNDNLEKMTADKESYG-DETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACE 223
+N D + + + ES D N+D V+++ N+N + D F DL + + + +A +
Sbjct: 48 ENEDADQNTSVESESEELDNENEDERVQKSV--NLNASSTSDIEKFSDLQLSENIQKAIK 105
Query: 224 ELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALP---ILQALLENPQRYFA-L 391
E+ ++ ++IQK +IP L G+D++G A+TGSGKT AF +P +L AL P+ +
Sbjct: 106 EMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVI 165
Query: 392 ILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 571
I++PTRELA QI + L +++GG + A+A L K ++++ATPGRL+DH
Sbjct: 166 IISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDH 225
Query: 572 LENTKGFNLRPLKYLVMDEADRILNMDFE 658
L+NTKGF R L+ LV+DEADRIL + FE
Sbjct: 226 LQNTKGFVFRNLRSLVIDEADRILEIGFE 254
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 135 bits (327), Expect = 5e-33
Identities = 67/163 (41%), Positives = 102/163 (62%), Gaps = 3/163 (1%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 355
+F+ + + + + L ++ P++IQ + IP+ALLGKDI+G A TGSGKT AF +PIL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 356 ALLENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 526
LL P++ LIL PTRELA Q + + + + +GG+ + Q L K
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
+P I+IATPGR +DH+ N++GF + ++ +VMDEADR+L F
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGF 422
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 132 bits (320), Expect = 3e-32
Identities = 71/177 (40%), Positives = 109/177 (61%), Gaps = 8/177 (4%)
Frame = +2
Query: 152 EDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTG 331
+D + +++ G+ + + +++ +K+PS IQ+ AIPV L KD+IG+AETGSGKT
Sbjct: 242 DDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTA 301
Query: 332 AFALPILQALLENPQRY--------FALILTPTRELAFQISEQFEALGASIGVKCAVIVG 487
AF +P++ A+ + P +A++L PTRELA QI + +G +C +VG
Sbjct: 302 AFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVG 361
Query: 488 GMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
G Q+ +S+ HI++ATPGRL+D LE + F L Y+VMDEADR+L+M FE
Sbjct: 362 GHAFEEQSFQMSQGAHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFE 417
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 121 bits (292), Expect = 8e-29
Identities = 65/140 (46%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
Frame = +2
Query: 233 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF--ALILTPT 406
+ KP IQ IP A +G DIIG A+TGSGKT AF +PIL+ L N + AL++ PT
Sbjct: 142 FSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPT 201
Query: 407 RELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHL-ENT 583
RELA QI + FE + S ++ I GG+ + Q +L+K PH+++ATPGRL + EN
Sbjct: 202 RELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENN 261
Query: 584 KGFNLRPLKYLVMDEADRIL 643
N + +K LV+DEADR+L
Sbjct: 262 LTGNFKKIKCLVLDEADRLL 281
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 120 bits (288), Expect = 2e-28
Identities = 66/166 (39%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL- 352
TF++ G + + + ++L ++ P+ IQ++A P+A+ G+D++G++ TGSGKT ++ LP +
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 353 ----QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 520
Q LL L+L PTRELA QI ++ G S ++ + GG+ Q L
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
Query: 521 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+ I IATPGRL+D L++ K NLR + YLV+DEADR+L+M FE
Sbjct: 243 IRGVEICIATPGRLLDMLDSNK-TNLRRVTYLVLDEADRMLDMGFE 287
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 118 bits (285), Expect = 6e-28
Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 3/162 (1%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+ +G+ L A + +K P+ IQ++ IP+ L G+D++G+A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 359 L---LENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
L L N ALIL+P RELA Q + + ++ IVGG+ + Q +LS K
Sbjct: 131 LKSTLANSNTR-ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGK 189
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
P I++ATPGR + HL+ L ++Y+V DEADR+ M F
Sbjct: 190 PDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGF 230
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 116 bits (279), Expect = 3e-27
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Frame = +2
Query: 74 TADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELK-WKKPSK 250
+A+ ++ DE D +++ + + ++ + +DV + E LK +K+P+
Sbjct: 131 SANASNHNDEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKNYKEPTP 190
Query: 251 IQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ---ALLENPQRYFALILTPTRELAF 421
IQ P L G+D++G+AETGSGKT AF +P LQ L +N L+++PTRELA
Sbjct: 191 IQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAI 250
Query: 422 QISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLR 601
Q E +L +K V+ GG QA +K +II TPGRL+D L N +
Sbjct: 251 QTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAKNASVIIGTPGRLLD-LINDGSIDCS 308
Query: 602 PLKYLVMDEADRILNMDFE 658
+ YLV+DEADR+L+ FE
Sbjct: 309 QVGYLVLDEADRMLDTGFE 327
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 112 bits (270), Expect = 4e-26
Identities = 67/192 (34%), Positives = 104/192 (54%)
Frame = +2
Query: 80 DKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQK 259
D+ES+ + + TE+V T+ F+D + L E +++PS IQ+
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDV---TKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQE 72
Query: 260 EAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQF 439
E+IP+AL G+DI+ A+ G+GKT AF +P L+ + + LIL PTRELA Q S+
Sbjct: 73 ESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVC 132
Query: 440 EALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLV 619
+ LG + VK V GG + + L+ HI++ TPGR++D L + V
Sbjct: 133 KTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD-LAGKGVADFSECTTFV 191
Query: 620 MDEADRILNMDF 655
MDEAD++L+ +F
Sbjct: 192 MDEADKLLSPEF 203
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 109 bits (262), Expect = 3e-25
Identities = 68/173 (39%), Positives = 97/173 (56%), Gaps = 8/173 (4%)
Frame = +2
Query: 161 EDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFA 340
E + TF D + L A + +++KP+ +Q E IP+AL GKD++ A TGSGKT A+
Sbjct: 10 ESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 341 LPILQALL------ENPQRYFALILTPTRELAFQISEQFEALGA--SIGVKCAVIVGGMD 496
+PIL+ LL EN + FAL+L PTRELA Q+ E L A S ++ +
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 497 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
Q +L P I+IATP R V H+ + L LK+LV+DEAD +L+ +
Sbjct: 130 DTVQRPLLLDLPDIVIATPSRCVVHVASGV-LPLDKLKFLVIDEADLMLSFGY 181
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 108 bits (260), Expect = 6e-25
Identities = 67/209 (32%), Positives = 113/209 (54%), Gaps = 4/209 (1%)
Frame = +2
Query: 41 IPQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEAC 220
+P+N + +K+ +E ++ E + E ++E + F +L + A
Sbjct: 1 MPKNRTGRSREAREKKRKEEE--EEIEELNSQIEALSETVDH----FAELPLTQPTKSAL 54
Query: 221 EELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF----A 388
+ + ++IQK+ IP AL G+DI+G A+TGSGKT AF +P+++ L A
Sbjct: 55 KNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGA 114
Query: 389 LILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVD 568
L+++PTRELA Q E +G +I+GG + + LS+ +I++ TPGRL+
Sbjct: 115 LVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM-NILVCTPGRLLQ 173
Query: 569 HLENTKGFNLRPLKYLVMDEADRILNMDF 655
H++ F+ L+ L++DEADRIL+M F
Sbjct: 174 HIDQAVNFDTSGLQMLILDEADRILDMGF 202
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 107 bits (258), Expect = 1e-24
Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 7/151 (4%)
Frame = +2
Query: 227 LKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL-----QALLENPQRYFAL 391
L ++KP+ IQ +AIP G+D+IG+A+TGSGKT AF LP+ Q L+ + A+
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAI 495
Query: 392 ILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 571
I+TPTRELA QI + + + ++ GG + Q L + I++ TPGR++D
Sbjct: 496 IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDV 555
Query: 572 LENTKG--FNLRPLKYLVMDEADRILNMDFE 658
L G NL YLV+DEADR+ ++ FE
Sbjct: 556 LSANAGRVTNLHRCTYLVLDEADRMFDLGFE 586
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 106 bits (254), Expect = 3e-24
Identities = 61/179 (34%), Positives = 99/179 (55%)
Frame = +2
Query: 122 VEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIG 301
VE T +E+VN + +F+++ + + L ++ PS +Q AI G+D+I
Sbjct: 9 VELTTSEDVNAVS-----SFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIA 63
Query: 302 LAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVI 481
A++G+GKT F++ ILQ++ + + ALIL+PTRELA QI ALG + V+C
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHAC 123
Query: 482 VGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+GG + L H++ TPGR+ D + + R +K L++DEAD +LN F+
Sbjct: 124 IGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFK 181
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 98.3 bits (234), Expect = 9e-22
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 1/174 (0%)
Frame = +2
Query: 140 ENVNEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 316
++V E D+ I TF D+ + L +++PS IQ+ AI L +D++ A++G
Sbjct: 7 DSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSG 66
Query: 317 SGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMD 496
+GKT F++ +LQ + + ++ ALIL PTRELA QI + ALG + V+C +GG
Sbjct: 67 TGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTL 126
Query: 497 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+ L H+++ TPGR+ D ++ + ++ V+DEAD +L+ F+
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFK 179
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 96.7 bits (230), Expect = 3e-21
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 16/209 (7%)
Frame = +2
Query: 80 DKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKK----PS 247
D E + + Q+ E Q ++ + I + V + + + L K P+
Sbjct: 104 DSEHFSQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQLDTQLADHLNNKMNISAPT 163
Query: 248 KIQKEAIPVALL--GKDIIGLAETGSGKTGAFALPILQALLENPQRY-------FALILT 400
IQ +P L KD A+TGSGKT A+ LPI+Q L+ P+ +A+I+
Sbjct: 164 AIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMA 223
Query: 401 PTRELAFQISEQFEALG---ASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 571
PTREL QI L S + ++GG ++ + K +I+I TPGRL DH
Sbjct: 224 PTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADH 283
Query: 572 LENTKGFNLRPLKYLVMDEADRILNMDFE 658
LENT+ ++ ++++V+DE DR+++M FE
Sbjct: 284 LENTEALDVSQVRWVVLDEGDRLMDMGFE 312
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 95.5 bits (227), Expect = 6e-21
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 18/160 (11%)
Frame = +2
Query: 233 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN-------------- 370
+ +P+ +QK +IP+ G+D++ A+TGSGKT F PIL +
Sbjct: 189 YTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMG 248
Query: 371 --PQRYF--ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 538
P++ + LIL PTREL QI E+ V+ + GG D+ AQ + + +
Sbjct: 249 YRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDL 308
Query: 539 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+ ATPGRLVD ++ + +L +K+LV+DEADR+L+M FE
Sbjct: 309 LSATPGRLVDLIDRGR-ISLANIKFLVLDEADRMLDMGFE 347
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 93.5 bits (222), Expect = 2e-20
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 4/159 (2%)
Frame = +2
Query: 179 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 358
F+D + L A + ++ PS++Q+ IP ++LG D++ A++G GKT F L LQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 359 LLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALML---SK 526
+ L+L TRELAFQI ++ + V+ AV GG+++ SK
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 527 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRIL 643
PHI++ATPGRL + L K + +K+ V+DE D++L
Sbjct: 173 SPHIVVATPGRL-NALVREKILKVNSVKHFVLDECDKLL 210
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 92.3 bits (219), Expect = 6e-20
Identities = 47/136 (34%), Positives = 80/136 (58%), Gaps = 6/136 (4%)
Frame = +2
Query: 269 PVALLGKDIIGLAETGSGKTGAFALPILQALLENP-QRYFALILTPTRELAFQISEQFEA 445
P+ G D+ A TGSGKT ++ +PI+Q L R +++ PTREL Q+++ FE
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 446 LGASIGVKCAVIVGGMDMVAQALMLSKKPH-----IIIATPGRLVDHLENTKGFNLRPLK 610
+ G++ G + + L+ + ++++TPGRLVDH+ N + F+L+ L+
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLR 287
Query: 611 YLVMDEADRILNMDFE 658
Y+V+DEADR+L+ F+
Sbjct: 288 YMVIDEADRLLDQSFQ 303
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 87.0 bits (206), Expect = 2e-18
Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Frame = +2
Query: 203 VLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL-LENPQR 379
+LCE ++ + + IQ+ AIP +D++ A TGSGKT A+ PILQ L L P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG 115
Query: 380 YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQ-ALMLSKKPHIIIATPG 556
Y A+I+ PTREL QI Q E L +K + + + + A L +K + I TP
Sbjct: 116 YRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPM 175
Query: 557 RLVDHLENTKGFNLRPLKYLVMDEADRILNMDF 655
RLV ++ G + +++ VMDEADR+ F
Sbjct: 176 RLVQAIQT--GLSFEKVEFFVMDEADRLFEPGF 206
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 86.6 bits (205), Expect = 3e-18
Identities = 55/159 (34%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Frame = +2
Query: 176 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG--KDIIGLAETGSGKTGAFALPI 349
+F++L + L + +K++KPSKIQ++A+P+ L +++IG +++G+GKT AFAL +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 350 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 529
L + + + A+ L P+RELA QI + +G VK A G D V + + +
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKGAKIDAQ 232
Query: 530 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILN 646
I+I TPG ++D L + + R +K V+DEAD +L+
Sbjct: 233 --IVIGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLD 268
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 79.8 bits (188), Expect = 3e-16
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Frame = +2
Query: 305 AETGSGKTGAFALPILQALLE-----NPQRYFALILTPTRELAFQISEQFEALGASIGVK 469
A+TG+GKT AF L + +L+ N + ++IL+PTRELA QI E+ L G++
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
Query: 470 CAVIVGGMDMVAQALMLSK-KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILN 646
+ +GG + + + + +++IATPGRL DHL+N + ++DEADR+++
Sbjct: 143 VSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMD 202
Query: 647 MDF 655
M F
Sbjct: 203 MGF 205
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 74.9 bits (176), Expect = 9e-15
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Frame = +2
Query: 173 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 352
++F+ + + L A +KK + +Q AIP+ L KD++ A TGSGKT A+ LP
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 353 QALLE---NPQRYFALILTPTRELAFQI--------SEQFEALGASIGVKCAVIVGGMDM 499
+ + ALI+ PTRELA QI + Q ++L + + +GG
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 500 VAQ--ALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFE 658
+ A K P ++I TPGRL + L + + + L+ L++DEAD +++M F+
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSH---ISSKHLEILILDEADTLIDMGFQ 172
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/61 (39%), Positives = 34/61 (55%)
Frame = +2
Query: 236 KKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTREL 415
+K K Q +AI G +I T SGK+ + +PILQ+LLE+ Q A + PT+ L
Sbjct: 310 EKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQS-TAFFVFPTKSL 368
Query: 416 A 418
A
Sbjct: 369 A 369
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 32.3 bits (70), Expect = 0.063
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Frame = +2
Query: 245 SKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQALLE--------NPQRYFALIL 397
++IQ P+A ++I+ A TG+GKT L IL L + N Q + + +
Sbjct: 521 NRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYI 580
Query: 398 TPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATP 553
P + L ++ F ++ A + G + Q + + II+ TP
Sbjct: 581 APLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQI---SETQIIVTTP 629
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.9 bits (69), Expect = 0.084
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 248 KIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLE-NPQRYFALILTPTREL 415
K Q EAI L GKD+ L TG GK+ + LP A++E R L+++P L
Sbjct: 522 KNQLEAINGTLSGKDVFILMPTGGGKSLCYQLP---AVIEGGASRGVTLVISPLLSL 575
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 83 KESYGDETNQDSEVEQTPTENVNEDTEDD 169
+ES G T +SEV QTPT +V E+ ED+
Sbjct: 38 EESAGQSTGTESEVIQTPT-SVEENNEDE 65
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.9 bits (64), Expect = 0.34
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Frame = +2
Query: 185 DLGVVDVLCEACEELKWKKPSKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQAL 361
++ +D+LC L ++ ++IQ P+A ++++ A TG+GKT L +LQ +
Sbjct: 260 EISSMDILCRKTF-LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTI 318
Query: 362 ---------------LENPQRYFALI-LTPTRELAFQISEQFEALGASIGVKCAVIVGGM 493
L+ + F ++ + P + LA ++ E+ A +G+K + G M
Sbjct: 319 SNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDM 378
Query: 494 DMVAQALMLSKKPHIIIATP 553
+ + + I++ TP
Sbjct: 379 QLTKTEI---AETQILVTTP 395
Score = 25.0 bits (52), Expect = 9.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +2
Query: 305 AETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIV 484
A TGSGKT A L +AL P+ I + ++ + L +G+ +
Sbjct: 1157 APTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELT 1216
Query: 485 GGMDMVAQALMLSKKPHIIIATP 553
G + +A+ +III TP
Sbjct: 1217 GDTNPDVKAV---TNANIIITTP 1236
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 44 PQNNDNLEKMTADK-ESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVD 202
P +N +K A K E G+E + ++E ++ +E +E ED+ + + V+D
Sbjct: 350 PDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQVID 403
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 28.3 bits (60), Expect = 1.0
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 101 ETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKI--QKEAIPV 274
ET +S +E ENV+ D ED++I F + + V E + KP + QK+ +
Sbjct: 989 ETLTNSLMEDVGPENVDMDIEDNEI-FTNQSTMSVPSMLVENEESPKPDEYIDQKDKVQS 1047
Query: 275 ALL-GKDIIGL 304
LL GK +G+
Sbjct: 1048 PLLNGKSPVGV 1058
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 1.4
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 4/189 (2%)
Frame = +2
Query: 98 DETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVA 277
D ++D++ TP + + +K KD E+ ++ ++++ + V
Sbjct: 450 DSNDEDAKAGTTPVKVAGRSEQSNK---KDTEFARTKSYR-EQREFLPAFAVREQLLSVI 505
Query: 278 LLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALI--LTPTRELAFQISEQF-EAL 448
+ +I + ETGSGKT A Q L E+ +I P R A ++++ E +
Sbjct: 506 RDNQVLIVVGETGSGKTTQLA----QFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVSEEM 561
Query: 449 GASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDE 628
G +G + D+ ++ T G L+ E+ NL ++MDE
Sbjct: 562 GVRLGSTVGYSIRFEDVTGPDTVIK------YMTDGVLL--RESLMQNNLEKYSVIIMDE 613
Query: 629 A-DRILNMD 652
A +R LN D
Sbjct: 614 AHERSLNTD 622
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 83 KESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEE 226
KES G+++N EV + E +EDD+ T+++ L EA EE
Sbjct: 136 KESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEE--EASKLREAYEE 181
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = -1
Query: 253 NLRGFLPFQFFTSLAEYVYNSQILKCYFIIFSIFVDIFGWSL--FHLTI--LVGFVSIAF 86
N F+P Q +A++ S+ CYF++ +I I GWS + TI L+ F+SIA
Sbjct: 242 NKYNFVPLQI---IAQF---SKTANCYFLLIAIMQMIPGWSTTGTYTTIIPLLIFISIAI 295
Query: 85 L 83
L
Sbjct: 296 L 296
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +2
Query: 242 PSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAF 421
P + Q+E + + + + +A T SGKT + ++ +L + + + PT+ L
Sbjct: 736 PDEWQRETLDILDRDESVFVVAPTSSGKT-FISFYAMEKVLRDNDDGVVIYVAPTKALVN 794
Query: 422 QISEQFEA 445
Q+S + A
Sbjct: 795 QLSAEVYA 802
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Frame = -3
Query: 137 LEFVPPHYPGWFRLHSF------PCLQSFSLNYHCFGEYK--KDANIESMCL 6
LE + HY W R+H+F P + S +L +G ++ +D +++S+ L
Sbjct: 213 LEKIKTHYKTWLRIHTFLTLFPVPSVLSSNLKKQMYGWFEDLRDESLKSIIL 264
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +2
Query: 311 TGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQ 424
TGSGKT F I A P LIL +ELA Q
Sbjct: 55 TGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQ 92
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 47 QNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTED-DKITFKDLGVVDVLCEACE 223
+ ND E+ ++ E + + S+ ++TP E N T KI V +C+ E
Sbjct: 33 EENDAAEEGASNGEKKKKKKKKSSKKKKTPQEQTNPPTVGLSKIFVNKKYPVGEVCDYAE 92
Query: 224 ELKWKKPSKIQKEAI 268
+ W+ + +K A+
Sbjct: 93 DNLWRTTDE-EKRAL 106
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +2
Query: 44 PQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDK---ITFKDLGVVDVLCE 214
P N+ +EK A+ E+ T D ++ + P + E+++DDK +D+G + E
Sbjct: 497 PATNEEVEKNNANSENANGLT--DEKIIEAPLD-TKENSDDDKPSPAAAEDIGTNGAIEE 553
Query: 215 ACEELKWKKPSKIQKEAIPVALLGKD 292
+ + +P K + + L K+
Sbjct: 554 IPQVSEVLEPEKAHTTNLQLNALDKE 579
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 478 NSWWYGHGGTSTNAIQETSHN 540
NSWWY + G S + +E HN
Sbjct: 322 NSWWYPN-GLSNSMPEEIQHN 341
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 122 PHYPGWFRLHSFPCLQSFSLNYHCFGEYKKDA 27
P P FR S P + + +Y G+Y++DA
Sbjct: 178 PEVPSRFRSRSPPARRRYRDDYRRGGDYRRDA 209
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 62 LEKMTADKESYGDETNQDSEVEQTPTENVNEDTEDDKITFKDLGVVDVLCEACEEL 229
L K+ A + D+ NQ E+ QT ++ N +D+GV+DV ACE L
Sbjct: 288 LNKIDAMRPEDLDQKNQ--ELLQTIIDDGNVKVVQTSCV-QDIGVMDVRTTACEAL 340
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = -1
Query: 472 TFYTYACTKCFKLF*YLKCQFPCWCEY----KCKISLRVL-Q*CLKYGQGKGTCLTRTC 311
T T C KC+ L + C F C + C + L V+ + C K G ++++C
Sbjct: 1247 TSNTRICEKCYSLVPRMSCTFCCLSIHGLCIVCGLCLHVMHEDCYKEWFSNGDSISQSC 1305
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 50 NNDNLEKMTADKESYGDETNQDSEVEQTPTENVN 151
NN+NL + K+S GD T+ + ++ TE +N
Sbjct: 231 NNENLNPTSNTKQSVGDNTSPQTVID---TEGLN 261
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 7.3
Identities = 22/95 (23%), Positives = 35/95 (36%)
Frame = +2
Query: 137 TENVNEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 316
T+ + + EDD I K V + L E + +W I + A + + ++ L E
Sbjct: 68 TDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNTNLDATMDQTVVVLHEKL 127
Query: 317 SGKTGAFALPILQALLENPQRYFALILTPTRELAF 421
LP L LE P + +AF
Sbjct: 128 ENDRILMYLPHLDKSLEQPYNHLPYYHPAVAGIAF 162
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 256 KRSYSRRVTRQRYHWSCRDRFW*D 327
+R+ +RR ++Y WS D W D
Sbjct: 512 RRARARRAAMEKYLWSEADSMWYD 535
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 588 PLVFSRWSTNLPGVAMIM*GFLDSISAC 505
P VFS + NLPG A+ FLD+ C
Sbjct: 345 PPVFSHYVMNLPGSAI---EFLDAFKGC 369
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +1
Query: 424 DIRTI*STWCKHRCKMCSNSWWYGHGGTSTN 516
D+ T S W + + W+YG G ST+
Sbjct: 602 DMNTKMSKWERDERNLIEGGWYYGRGMKSTD 632
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/61 (21%), Positives = 28/61 (45%)
Frame = +2
Query: 209 CEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFA 388
CE L+ + + ++I + G ++ G +TG ++A I A+L++ +
Sbjct: 44 CETEALLREENKENLSSDSIRQMIFGDEMAGFVDTGEKPPCSYATLIGLAILQSHNKQLT 103
Query: 389 L 391
L
Sbjct: 104 L 104
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 339 AKAPVLPEPVSARPMISLPSNA 274
AKAP +P P S P +S P ++
Sbjct: 1234 AKAPPVPAPSSEAPSVSTPRSS 1255
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 98 DETNQDSEVEQTPTENVNEDTEDDKITFKD--LGVVDVLCEACEE 226
D+ + D + ++ P ENV + ED+ + D G DV + E+
Sbjct: 24 DDDDADMDQDKNPEENVMNEKEDEDVDAVDEKSGEEDVEMDTMED 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,292
Number of Sequences: 5004
Number of extensions: 63369
Number of successful extensions: 341
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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