Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28d01
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      116   2e-28
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              25   0.48 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              25   0.48 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  116 bits (280), Expect = 2e-28
 Identities = 67/181 (37%), Positives = 108/181 (59%), Gaps = 10/181 (5%)
 Frame = +2

Query: 143 NVNEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGS 319
           NV+ D     I +F+  G+ +++ +  ++  +KKP+ +QK A+P+ + G+D++  A+TGS
Sbjct: 185 NVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGS 244

Query: 320 GKTGAFALPILQALLEN------PQRYF---ALILTPTRELAFQISEQFEALGASIGVKC 472
           GKT AFA+PI+  LLE          Y     +I++PTREL  QI +Q      +  +K 
Sbjct: 245 GKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKT 304

Query: 473 AVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMD 652
            V  GG  ++ Q   LS   HI++ATPGRL+D +E  +      +++LV+DEADR+L+M 
Sbjct: 305 VVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGR-VKFSSVQFLVLDEADRMLDMG 363

Query: 653 F 655
           F
Sbjct: 364 F 364


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 35  FCIPQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNE---DTEDDK 172
           FCI  N   +E++        +    +S ++Q   +++NE   D ED+K
Sbjct: 10  FCICVNAMTIEELKIQLHDVQEICKTESGIDQQTVDDINEVNFDVEDEK 58


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 35  FCIPQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNE---DTEDDK 172
           FCI  N   +E++        +    +S ++Q   +++NE   D ED+K
Sbjct: 10  FCICVNAMTIEELKIQLRDVQEICKAESGIDQQTVDDINEVNFDVEDEK 58


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 142 FGWSLFHLTILVGFVSIAFLV 80
           FGW +  L +++  VSI   +
Sbjct: 397 FGWQMICLIVVIALVSIIMYI 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,323
Number of Sequences: 438
Number of extensions: 4561
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)