Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c22
         (400 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   1.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   1.9  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   2.6  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   4.5  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   4.5  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   5.9  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = +3

Query: 243 SEYEYSHVKINFKHKF*GSYNNF 311
           S Y+++  + NF +++  +Y+N+
Sbjct: 202 SSYQFNDPQFNFNYQYNQAYSNY 224


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = +3

Query: 243 SEYEYSHVKINFKHKF*GSYNNF 311
           S Y+++  + NF +++  +Y+N+
Sbjct: 222 SSYQFNDPQFNFNYQYNQAYSNY 244


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 335 NSVYKINVLMWIQLNLFNL 391
           NS+Y +++L+WI +    L
Sbjct: 248 NSLYSLHLLLWITVTFILL 266


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 102 LAWSANDLTLVSCGTEGAVYEWSMSSGQRVGEVILKTNQFKA 227
           LA +    T+V CGT+G + +   S   R  ++ L   +++A
Sbjct: 236 LAQTKKLATIVGCGTDGTMIKCLKSRPAR--QIALTVPRYQA 275


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 102 LAWSANDLTLVSCGTEGAVYEWSMSSGQRVGEVILKTNQFKA 227
           LA +    T+V CGT+G + +   S   R  ++ L   +++A
Sbjct: 236 LAQTKKLATIVGCGTDGTMIKCLKSRPAR--QIALTVPRYQA 275


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 8   CSSKWPSDPSFFLS 49
           CS+ W  DPS+ ++
Sbjct: 311 CSTMWLKDPSWLVN 324


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 162 RKRRLPCRKILKSSR 118
           RK+ LP RK+L+  R
Sbjct: 595 RKKSLPVRKLLELER 609


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 132 VSCGTEGAVYEWS 170
           V CGT G   EW+
Sbjct: 226 VPCGTSGNPLEWT 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,926
Number of Sequences: 336
Number of extensions: 1878
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)