Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c19
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...   119   2e-27
At3g05540.1 68416.m00607 translationally controlled tumor family...    95   5e-20
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    34   0.091
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    34   0.091
At1g76380.3 68414.m08876 DNA-binding bromodomain-containing prot...    30   2.0  
At1g76380.1 68414.m08874 DNA-binding bromodomain-containing prot...    30   2.0  
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    29   3.4  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    28   7.9  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score =  119 bits (286), Expect = 2e-27
 Identities = 70/174 (40%), Positives = 101/174 (58%), Gaps = 3/174 (1%)
 Frame = +3

Query: 78  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 248
           M +Y+D++TGDE+ SD++  K ++  +++EV G+ VT    D+ I G NPSAEE   DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59

Query: 249 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMN 428
            D + +  VDIV   RL E   + DKK +  Y+K Y+K L  KL E+  DQ  VFK  + 
Sbjct: 60  VDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIE 115

Query: 429 KVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 590
              K +L R  + QFF GE M  D  +    Y+  +G+  P  ++F HGL+E K
Sbjct: 116 GATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK--EGSTNPTFLYFAHGLKEVK 167


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
 Frame = +3

Query: 78  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEGT 251
           M +Y+DI+TGDE+ SD++  K ++       G L        ++EG NPS EE   DEG 
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIE------NGML-------WEVEGKNPSGEEGGEDEGV 47

Query: 252 DSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNK 431
           D      VDI+   RL E  +F DKK + +++K Y+K+L  KL+    +  E+FK ++  
Sbjct: 48  DDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIES 103

Query: 432 VMKDILGRFKELQFFTGESMDC-DGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 590
             K ++ + K+ QFF GESM+  +G +    YR  +G   P  ++  +GL+E K
Sbjct: 104 ATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYR--EGATDPTFLYLAYGLKEIK 155


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +3

Query: 105 GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 272
           G+   S   K +++D V+  +T  G  +T  +G+   EGF P+AEEAD+G  S +  G
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
 Frame = +3

Query: 246 GTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLK-------DYMKKLVAKLEEKAPDQV 404
           G D   +SG++ +  + +   Y  G+  + +LY +       D M+  + KL    P  +
Sbjct: 184 GIDWRKQSGLETLAPYYISVKYFSGNPLALSLYEEMLSHMKSDKMEVKLLKLNHPPPQIM 243

Query: 405 EVFKTNMNKVMKDILGRFKELQ-FFTGESMD 494
           EVFK+N N + ++    F ++  FF GE  D
Sbjct: 244 EVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At1g76380.3 68414.m08876 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
 Frame = +3

Query: 195 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVA 374
           GD+  +  N    +  + T        DI+L   LVE+    DKK     L    KK   
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTY 162

Query: 375 KL------EEKAPDQVEVFKTNMN 428
            +       E+ PD  E+ K  M+
Sbjct: 163 GVYSDPADPEELPDYYEIIKNPMD 186


>At1g76380.1 68414.m08874 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 579

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
 Frame = +3

Query: 195 GDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVA 374
           GD+  +  N    +  + T        DI+L   LVE+    DKK     L    KK   
Sbjct: 103 GDLDSDARNRRKIDGSDNTGEKASKATDILLQRSLVESTPLPDKKLLFFILDRVQKKDTY 162

Query: 375 KL------EEKAPDQVEVFKTNMN 428
            +       E+ PD  E+ K  M+
Sbjct: 163 GVYSDPADPEELPDYYEIIKNPMD 186


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 188 SRHQPTGHFVNNFIDQFHFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 33
           SRHQP+   V    D     +  E   T+ + + +LHFDG     N  N  N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 546 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 460
           F YH  +Y+ +W  C H N ++ Q +  VP
Sbjct: 255 FLYHGRMYVSAWHICFHSNVFSKQMKVVVP 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,070
Number of Sequences: 28952
Number of extensions: 319854
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)