Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c14
         (395 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   1.9  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    21   4.4  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    20   7.7  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
          protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 45 LCMTSRPHPPPP 10
          LC+  RPH P P
Sbjct: 17 LCVRKRPHSPEP 28



 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 161 TSGIYKCRLVKATMKDP 211
           T  I  CR  KA +KDP
Sbjct: 62  TPKIKSCRPFKAYIKDP 78


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative
          cytochrome P450 monooxigenase protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 54 ERVLCMTSRPHPPPP 10
          ERVL  T R +PP P
Sbjct: 49 ERVLLETLRMYPPVP 63


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 199 DEGPSTPKKREL 234
           DEGP T + REL
Sbjct: 51  DEGPCTSEGREL 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,924
Number of Sequences: 336
Number of extensions: 1900
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)