Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c14
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    29   0.20 
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    28   0.60 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   2.4  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    23   2.8  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   4.3  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   4.3  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   5.6  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   5.6  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.4  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    24   7.4  
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    24   9.8  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    24   9.8  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    24   9.8  

>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 175 QMSARESDDEGPSTPKKRELIRNF*KKILIKSDLAAL 285
           ++    SDDE P  PKK E  +N  +   ++S+LA L
Sbjct: 561 ELGVESSDDEDPDLPKKSESSKNKKQIAHLRSELAPL 597


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 264 Y*NFFLEISYKFSFFRSGGSFIVAFTS 184
           Y N FL  SYK+    SG +F + FT+
Sbjct: 94  YLNIFLPSSYKYLLSNSGANFTLQFTT 120


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 40  YDQPPSPSSPRE 5
           YD PPSPSSP +
Sbjct: 304 YDSPPSPSSPSD 315


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 23.4 bits (48), Expect(2) = 2.8
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 219 EKKRTYKKFLKKNSNKIR-PGSTGQEPKAK 305
           +KK+ +KK  K++S+K R  GS+ +E K K
Sbjct: 198 KKKKEHKKKDKESSSKKRKSGSSDKEEKKK 227



 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 192 KRR*RTLHSEKKRTYKK 242
           KR  R  HS KK++ KK
Sbjct: 164 KREKRKKHSSKKKSKKK 180


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 220 KKRELIRNF*KKILIKSDLAALAKNQRPKYCNFSSTLPFYFKQE 351
           +KREL+ N  K+       + L K + P   +  + L FY K+E
Sbjct: 164 QKRELVSNSIKEATSPKTSSILTKPRNPSKLDSYTHLSFYEKRE 207


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 39  YKVRAPDARQ*TMKNVVSFNTNHQKKVNSP 128
           YKV+ PD     +K V  F    +KK+  P
Sbjct: 713 YKVKKPDTLGRDLKQVTLFEEGKRKKLRRP 742


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 121 FTFFWWLVLKLTTFFIVHC 65
           F   WW+V+  T+F  V+C
Sbjct: 129 FIVAWWVVVAWTSFVAVNC 147


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 281 HWPRTKGQSTAILVVPYHFISSKSS 355
           +WP+ KG+   I + P H IS   S
Sbjct: 722 NWPKRKGEKQYIDMFPIHRISGVGS 746


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 267 FY*NFFLEISYKFSF-FRSGGSFIVAFTS 184
           F+  FFL  S+ FSF F     FIV F+S
Sbjct: 121 FFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 139 HVMNGEFTFFWW--LVLKLTTFFIVHC 65
           +VM G F F+W+   + K  ++F V C
Sbjct: 336 YVMIGSFVFYWFPGFIFKGLSYFTVLC 362


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 110 KKSKFTIHYVKRTALCSTSGIYKCRLVKATMKDPPLRKKE 229
           K  K+ + Y K T     SG  K +L+      PPLRK E
Sbjct: 33  KSGKYVLGY-KSTLKTLRSG--KAKLILIAANAPPLRKSE 69


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 313 NFSSTLPFYFKQEQLLAAVSE 375
           NF+ST P+YF  E+ L   S+
Sbjct: 2   NFNSTNPYYFTHEKNLNNASK 22


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 225 KRTYKKFLKKNSNKIRP 275
           K+T+KK L++ S+K +P
Sbjct: 350 KKTFKKLLRRGSSKRKP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,646,234
Number of Sequences: 5004
Number of extensions: 30641
Number of successful extensions: 73
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)