Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c14
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,400...    30   0.59 
01_06_0066 - 26113761-26114683,26115031-26115106,26115204-261154...    29   1.0  
01_04_0072 - 15721866-15723563                                         28   3.1  
01_04_0070 - 15704794-15706491                                         28   3.1  

>07_01_0542 +
           4002542-4003119,4004347-4004404,4004518-4004835,
           4005201-4005446,4005550-4005648,4005912-4006097,
           4006204-4006401,4006521-4006596,4006721-4007637
          Length = 891

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 124 EFTFFWWLVLKLT--TFFIVHCLASGARTLYDQPPSPSS 14
           +F++FW   +KL   T F VHC A     L D+ P P++
Sbjct: 199 KFSYFWVRCVKLVCVTLFAVHCSACFYYLLADRYPDPTN 237


>01_06_0066 -
           26113761-26114683,26115031-26115106,26115204-26115401,
           26115829-26116014,26116292-26116447,26116486-26116731,
           26116832-26117149,26117235-26117292,26117472-26117837,
           26119300-26119604
          Length = 943

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 121 FTFFWWLVLKL--TTFFIVHCLASGARTLYDQPPSPSS 14
           F +FW    KL   T F VHC A     L D+ P P+S
Sbjct: 231 FNYFWVRCAKLICVTLFAVHCAACFYYLLADRYPVPTS 268


>01_04_0072 - 15721866-15723563
          Length = 565

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 130 NGE-FTFFWWLVLKLTTFFIVHCL 62
           +GE +T  WWL + L TF  V C+
Sbjct: 89  HGECYTSNWWLTVSLVTFLTVFCI 112



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 130 NGE-FTFFWWLVLKLTTFFIVHCL 62
           +GE +T  WWL + L TF  V C+
Sbjct: 339 HGECYTSNWWLTVSLVTFLTVFCI 362


>01_04_0070 - 15704794-15706491
          Length = 565

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 130 NGE-FTFFWWLVLKLTTFFIVHCL 62
           +GE +T  WWL + L TF  V C+
Sbjct: 89  HGECYTSNWWLTVSLVTFLTVFCI 112



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 130 NGE-FTFFWWLVLKLTTFFIVHCL 62
           +GE +T  WWL + L TF  V C+
Sbjct: 339 HGECYTSNWWLTVSLVTFLTVFCI 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,120,908
Number of Sequences: 37544
Number of extensions: 208546
Number of successful extensions: 631
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)