Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c14
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.    27   4.9  
AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.    27   4.9  
AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cel...    27   4.9  
AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical...    27   6.4  
AF098995-13|AAC67476.2|   95|Caenorhabditis elegans Hypothetical...    27   6.4  
Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical pr...    26   8.5  
L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical
           protein T27E9.5 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 121 FTFFWWLVLKLTTFFIVHCLA 59
           F  F+WL+ +L TFFI H  A
Sbjct: 396 FLVFFWLLAELNTFFIKHVFA 416


>AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.
          Length = 691

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 60  HQERVLCMTSRPHPPPP 10
           HQ R + +  R HPPPP
Sbjct: 392 HQHRPIMLAPRHHPPPP 408


>AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 60  HQERVLCMTSRPHPPPP 10
           HQ R + +  R HPPPP
Sbjct: 429 HQHRPIMLAPRHHPPPP 445


>AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform a protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 60  HQERVLCMTSRPHPPPP 10
           HQ R + +  R HPPPP
Sbjct: 429 HQHRPIMLAPRHHPPPP 445


>AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical
           protein Y53F4B.42 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 307 YCNFSSTLPFYFKQEQLLAAVSE*SFQKK 393
           YC    TL ++F  E+L   ++E   QKK
Sbjct: 252 YCRGDGTLVYFFDMEELETLLAEHGLQKK 280


>AF098995-13|AAC67476.2|   95|Caenorhabditis elegans Hypothetical
           protein F58E1.13 protein.
          Length = 95

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 157 TQCGSFHVMNGEFTFFWWLVLKLTTFFIVHC 65
           T C SF V N  ++ F+WL        +++C
Sbjct: 63  TPCWSFRVYNSSYSGFYWLETMSELQNVINC 93


>Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical
           protein F15H10.10 protein.
          Length = 262

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 107 VVSIKTNYVFHCSLSGIRSAYFV 39
           ++ +   Y+FH S   IR+ YFV
Sbjct: 209 LMEVSKTYIFHNSFESIRALYFV 231


>L15313-8|AAA28196.1|  469|Caenorhabditis elegans Hypothetical
           protein ZK353.8 protein.
          Length = 469

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -2

Query: 163 SRTQCGSFHVMNGEFTFFWWLVLKLTTFFIVHCLASGARTLYDQPPSPSSPRE 5
           S +  GSF +     +F  W++  LT F+ + C   G  +   Q  S S   +
Sbjct: 363 SSSNYGSFSLSTQTVSFVTWVLYPLTAFWNIFCGMIGWNSTGKQQDSKSKKND 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,386,755
Number of Sequences: 27780
Number of extensions: 180079
Number of successful extensions: 518
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)