Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28c12
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 54 3e-08
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 49 7e-07
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 44 3e-05
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 42 1e-04
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 38 0.001
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.004
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 36 0.004
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 36 0.007
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 34 0.022
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 33 0.038
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.038
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 32 0.067
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 31 0.12
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.15
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.15
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 30 0.27
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 30 0.36
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.36
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 29 0.47
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 2.5
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 2.5
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 27 2.5
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 3.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 5.8
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 7.7
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 25 7.7
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 7.7
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +3
Query: 177 ITDATEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCR 356
I D + + + + L CPIC + L++ TT C H +C +C++ L+ +K CPTCR
Sbjct: 66 IPDTKTLLETFQKIKKTLECPICTEALQRPFTT-HCGHTYCYECLLNWLKE-SKSCPTCR 123
Query: 357 KKLVSKRS 380
+KL ++ S
Sbjct: 124 QKLYTQPS 131
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 48.8 bits (111), Expect = 7e-07
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +3
Query: 135 ELSLYELHRTPQEVITDATEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCII 314
+++ +E +++ + +T + P ++ L C +C + + T C FC +CI
Sbjct: 251 DVASWETYQSRKAALTANDVYKMQPPNI--SLACTLCKKLARNACRTPCCDKLFCEECIQ 308
Query: 315 TALRSGNKECPTCRKKLVSKRSLRPD 392
TAL + ECP C +K V +L PD
Sbjct: 309 TALLDSDFECPNCHRKDVLLDTLNPD 334
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 222 SELMCPICLDMLKKTMTTKECLHRFCNDCIITAL--RSGNKECPTCRKKL 365
++ C ICLD + ++ C H FCN CI++AL + ++CP CR+K+
Sbjct: 202 ADYKCVICLDS-PENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +3
Query: 225 ELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVS 371
EL C IC ML + + C H FC C++ AL + + +CPTCR L S
Sbjct: 166 ELECQICFGMLYDPVVSP-CGHTFCGPCLMQAL-TQSPQCPTCRFGLPS 212
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = +3
Query: 204 SPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCR 356
S + L S L C IC + + + T C H FC+ CI LR + CP CR
Sbjct: 19 SLKGLDSSLRCLICHEYFRAPLITS-CSHTFCSFCIRDYLRE-HPMCPACR 67
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 234 CPICL---DMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRSLRPDP 395
C +CL ++ + K+C H F +CI L S CP CR K V+ S P
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKGVASASTPSSP 581
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/75 (30%), Positives = 32/75 (42%)
Frame = +3
Query: 234 CPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDLLI 413
C IC ++ K + C H FC C+I + CP CR K V K R + +
Sbjct: 360 CAICSNVAYKPVRLG-CSHVFCLHCLIILQKQKVDFCPLCRAKEVMKADSRNIDHALMNF 418
Query: 414 SKIYPSRDEYEAHQE 458
K Y R+ E +E
Sbjct: 419 MKTYFPREIKEKFEE 433
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Frame = +3
Query: 234 CPIC-----LDMLKKTMTTKECLHRFCNDCIITALRSGNKECPT--CRKKL 365
CP+C L+ K + EC H+ C C+ +G +CPT C K L
Sbjct: 13 CPLCQADRYLNPNMKLLINPECYHKMCESCVDRIFTTGPAQCPTPGCNKIL 63
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 33.9 bits (74), Expect = 0.022
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 231 MCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRSL-RPDPNFDL 407
+C IC + + T C H FC C IT R + PTC + + L D NFD
Sbjct: 253 VCLICKKDYRSPIATT-CGHHFCEQCAITRYR----KTPTCIQCGADTKGLFSVDKNFDR 307
Query: 408 LISKIYPSRDE 440
L+ DE
Sbjct: 308 LLKNRKSKNDE 318
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 33.1 bits (72), Expect = 0.038
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = +3
Query: 219 HSELMCPICLDML----KKTMTTKECLHRFCNDCIITALRSGNKECPT--CRKKLVSK 374
H+ + C C + L KK++ +C H FC+ C LR CP CRK++ K
Sbjct: 142 HNNIACAKCGNELVSDEKKSIFAAKCGHLFCSTC-AKELRKKTVPCPVQHCRKRITKK 198
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 33.1 bits (72), Expect = 0.038
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +3
Query: 213 SLHSELMCPICLDMLKKTMTTKE---CLHRFCNDCIITALRSGNKECPTCR 356
SL S C ICL+ ++ C H F CI L +GN CP CR
Sbjct: 759 SLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCR 809
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 32.3 bits (70), Expect = 0.067
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +3
Query: 225 ELMCPICL---DMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRK 359
++ CP+C+ D+ K +C +R C C N CP CR+
Sbjct: 15 DMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPACRR 62
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 198 AVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRS 329
AV+ L L C +C+D++ + + C H C +C+ + S
Sbjct: 734 AVNRLKLIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITS 777
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 264 TMTTKECLHRFCNDCIITALR-SGNKECPTCRKKL 365
T T +C H +C CI++ L+ N CP C+ ++
Sbjct: 207 TPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRI 241
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 162 TPQEVITDATEIAVSPRSLHSEL-MCPICLDMLKKTMT---TKECLHRFCNDCIITALRS 329
T Q+++ +++ S EL C +CL+ + ++T T C H F C+ +
Sbjct: 183 TEQQLVGPSSKPFASTTPALIELPTCVVCLERMDSSITGLITIVCQHTFHCPCL---QKW 239
Query: 330 GNKECPTCR 356
GN CP CR
Sbjct: 240 GNSSCPVCR 248
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/58 (24%), Positives = 22/58 (37%)
Frame = +3
Query: 180 TDATEIAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTC 353
T + A ++ + C +C K C H FC CI + + + CP C
Sbjct: 609 TGVSTSAEELKTFRAMCKCSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPIC 666
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.9 bits (64), Expect = 0.36
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +3
Query: 228 LMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTC 353
L C +C K+ C H FC++C+ CP C
Sbjct: 637 LKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQC 678
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 29.9 bits (64), Expect = 0.36
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 234 CPICLDML---KKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRSL 383
CPIC + + ++ + C H C +R+ N CPTC K +++ SL
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRT-NYRCPTCYKTIINVNSL 322
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 29.5 bits (63), Expect = 0.47
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = +3
Query: 234 CPICLDMLKK--TMTTKECLHRFCNDCIITALRSGNKECPTCRKKL 365
C ICL+ K + C H F CI + CPTC ++
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEV 366
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 216 LHSELMCPICLDMLKKTMTTKECLHRFCNDC 308
+H E C IC D + EC H FC C
Sbjct: 125 VHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Frame = +3
Query: 234 CPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKE------CPTCRKKLVSKRSLRP 389
CPIC + + C H C DC+ ++ + C TCR+ + +P
Sbjct: 877 CPICCNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKP 934
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +3
Query: 222 SELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLVSKRS 380
SE +C C +L + CLH DC + CP C+ + K++
Sbjct: 789 SEKVCDNCEGLLDVPFVSYSCLHLVHRDCATETV------CPKCKAGYLDKKN 835
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 207 PRSLHSELMCPICLDMLKKTMTTKECLHRFCNDCIITALRSGNKECPTCRKKLV 368
PR++ MCP+C L K + F ND +I A N++ P ++ +
Sbjct: 452 PRTMSFSKMCPLCCTTLSKFV---RHFFMFLNDSVILATEV-NEKAPRFYRRFI 501
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 65 HISVEFRIYWQNVFNRAF 118
H+S R YW V NRAF
Sbjct: 1411 HLSSSVRSYWSEVKNRAF 1428
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 334 LPDLKAVIIQSLQNLWRHSFVVIVFLSISKQIG 236
L ++ V I Q LW F+V V LSI Q+G
Sbjct: 452 LSSIEIVFIWYAQILWYLVFIVSVILSIYFQLG 484
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 72 PWNLEYIGKMSSTEPSQNKTWELSLYELHRTPQEVITDATEIA 200
PW + IGK + + T+ LS +P+E+ D ++A
Sbjct: 71 PWGNKAIGKRKNFRLYRLHTYSLSCNHSDWSPEELSLDTVQVA 113
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +3
Query: 234 CPICLDMLKKTMTTKECLHRFCNDCII 314
CP CL+ C H +C C++
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLL 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,082
Number of Sequences: 5004
Number of extensions: 62455
Number of successful extensions: 218
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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