Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c12
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.2  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   8.2  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   8.2  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   8.2  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   8.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.2  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 216 LHSELMCPICLDMLKKTMTTKECLHRFCN 302
           LH +++C +C D+   +   +  L+ FC+
Sbjct: 19  LHGQVICFVCKDITSTSALYRLKLYLFCD 47


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 423 ISWI*AGRSWGPVEENVWTLISFYKS 346
           ISW+  GR+ GP E    T +  Y S
Sbjct: 643 ISWLKDGRAMGPSERVHVTNMDQYNS 668


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 399 FDLL-ISKIYPSRDEYEAHQELVLWPN 476
           FD+  I +I P R +Y  H+E  L+ N
Sbjct: 317 FDMARIIQITPKRIQYAQHKENELYAN 343


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 399 FDLL-ISKIYPSRDEYEAHQELVLWPN 476
           FD+  I +I P R +Y  H+E  L+ N
Sbjct: 355 FDMARIIQITPKRIQYAQHKENELYAN 381


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 321 LRSGNKECPTCRKKLVSKRSLR 386
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 321 LRSGNKECPTCRKKLVSKRSLR 386
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 321 LRSGNKECPTCRKKLVSKRSLR 386
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 321 LRSGNKECPTCRKKLVSKRSLR 386
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 321 LRSGNKECPTCRKKLVSKRSLR 386
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 321 LRSGNKECPTCRKKLVSKRSLR 386
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 321 LRSGNKECPTCRKKLVSKRSLR 386
           +     E  TC+K  +S  SLR
Sbjct: 197 IEKSENETKTCKKYAISSNSLR 218


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = -1

Query: 266 CL-FEHIQTDWAHQLAVKTSWGDRYFRRVCDHFLWST 159
           CL F+H    +A        WG   F  +  H L  T
Sbjct: 277 CLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKT 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,883
Number of Sequences: 438
Number of extensions: 4270
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)