Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c11
         (703 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4RH82 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_UPI0000D9CF1C Cluster: PREDICTED: similar to Chloride i...    33   9.0  
UniRef50_Q7FZN6 Cluster: T14A16.2 protein; n=1; Arabidopsis thal...    33   9.0  
UniRef50_Q54WR2 Cluster: Putative uncharacterized protein; n=2; ...    33   9.0  

>UniRef50_A4RH82 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 676

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 85  VHEKRLRFRAEKTQLLCRNAELMRKLRSLWCSHKRYCTTTVARSSTPLSGYP 240
           V  +R+R    KT+  C+N     KLR + C  KR   T   RS    +GYP
Sbjct: 16  VPTRRMRQSKPKTKTGCKNC----KLRRIKCDEKRPACTQCTRSKKTCTGYP 63


>UniRef50_UPI0000D9CF1C Cluster: PREDICTED: similar to Chloride
           intracellular channel protein 1 (Nuclear chloride ion
           channel 27) (NCC27) (Chloride channel ABP) (Regulatory
           nuclear chloride ion channel protein) (hRNCC); n=2;
           Mammalia|Rep: PREDICTED: similar to Chloride
           intracellular channel protein 1 (Nuclear chloride ion
           channel 27) (NCC27) (Chloride channel ABP) (Regulatory
           nuclear chloride ion channel protein) (hRNCC) - Macaca
           mulatta
          Length = 288

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -2

Query: 219 GASCYSGSAISLVGT---PQAPELSHQLSVPAKQLCFLRSET 103
           GAS    SA++   T   PQAP+LS  LSV  ++  FLRS+T
Sbjct: 24  GASVGCHSAVNRQSTVCWPQAPQLSVNLSVSRQRAAFLRSKT 65


>UniRef50_Q7FZN6 Cluster: T14A16.2 protein; n=1; Arabidopsis
           thaliana|Rep: T14A16.2 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 630

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
 Frame = -2

Query: 429 IVLNTSHYLRGLDIGVIDSIKGEIAQVSHEASDVVSR*KAPKSISEGGR----CSVGAV* 262
           ++L+T  +L+ L +  I  ++G +  +SHE S ++ +   PK +S+ G     C +G V 
Sbjct: 21  LILDTHKFLKDLIVERIQEVQGMVV-LSHECSAIIQKKIVPKKLSDPGSFTLPCFLGTVA 79

Query: 261 VIR--------*STVGVS-AQRGGASCYSGSAISLVGTPQAPELSHQL 145
             R         S + +S A+R G + Y    ISL+   ++  +SH L
Sbjct: 80  FNRCLCDLGALVSPMPLSIAKRLGFTQYKSCNISLILADRSVRISHGL 127


>UniRef50_Q54WR2 Cluster: Putative uncharacterized protein; n=2;
            cellular organisms|Rep: Putative uncharacterized protein
            - Dictyostelium discoideum AX4
          Length = 2667

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 565  DSRIKILPKSISLNEYVIMRFSHALSTKIPQLIHKITIIYPQNLPDCIEHKPLPSRAR 392
            DS   +  ++  +N   I   +   +  IP+++  +  IY QN PD I   P+ S+ R
Sbjct: 1173 DSTFNVNSETRKINALAIKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFR 1230


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,183,508
Number of Sequences: 1657284
Number of extensions: 11496725
Number of successful extensions: 26865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26853
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)