Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c11
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738...    28   6.2  
04_04_1071 + 30585106-30585288,30585737-30585919                       28   8.3  

>10_06_0083 +
           10471648-10471806,10473261-10473343,10473384-10473810,
           10475806-10475932,10476329-10476471,10476687-10476749,
           10476833-10476898,10477047-10477085
          Length = 368

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 412 PLPSRARHRSHRLYQGRDRSSFSRGLRCGL*MKSS 308
           P P R+R R HR +Q +   SFSR + C    K+S
Sbjct: 273 PKPQRSRSRQHRGFQTK---SFSRSMSCDSHSKAS 304


>04_04_1071 + 30585106-30585288,30585737-30585919
          Length = 121

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 466 HKITIIYPQNLPDCIEHKPLP 404
           HK+ I  P+N+P CI   P P
Sbjct: 86  HKVWIEQPENIPTCIATAPCP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,834
Number of Sequences: 37544
Number of extensions: 323392
Number of successful extensions: 758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)