Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c11
         (703 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85133-1|CAA59445.1|  948|Homo sapiens RB protein binding protei...    31   3.0  
X13293-1|CAA31655.1|  700|Homo sapiens protein ( Human mRNA for ...    31   3.0  
BC053555-1|AAH53555.1|  700|Homo sapiens v-myb myeloblastosis vi...    31   3.0  
BC007585-1|AAH07585.1|  700|Homo sapiens v-myb myeloblastosis vi...    31   3.0  
AL121886-2|CAC08392.1|  700|Homo sapiens v-myb myeloblastosis vi...    31   3.0  
AK223482-1|BAD97202.1|  700|Homo sapiens MYB-related protein B v...    31   3.0  
AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation potential...    31   3.0  
AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding ...    31   3.0  

>X85133-1|CAA59445.1|  948|Homo sapiens RB protein binding protein
           protein.
          Length = 948

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 208 ARSSTPLSGYPHSRSSYDLDRTYRTSTPFTNRFRSFSSRDH 330
           +RS +P SG  +SRSSY   ++   ST   +  RSF SR H
Sbjct: 508 SRSKSPYSGSSYSRSSYTYSKSRSGSTRSRSYSRSF-SRSH 547


>X13293-1|CAA31655.1|  700|Homo sapiens protein ( Human mRNA for
           B-myb gene. ).
          Length = 700

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +1

Query: 175 CSHKRYCTTTVARSSTPL----SGYPHSRSSYDLDRTYRTSTPFTNRFRSF 315
           CS K   TT + R  TPL    + +      Y +D T  T TPF N    +
Sbjct: 479 CSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSMDNTPHTPTPFKNALEKY 529


>BC053555-1|AAH53555.1|  700|Homo sapiens v-myb myeloblastosis viral
           oncogene homolog (avian)-like 2 protein.
          Length = 700

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +1

Query: 175 CSHKRYCTTTVARSSTPL----SGYPHSRSSYDLDRTYRTSTPFTNRFRSF 315
           CS K   TT + R  TPL    + +      Y +D T  T TPF N    +
Sbjct: 479 CSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSMDNTPHTPTPFKNALEKY 529


>BC007585-1|AAH07585.1|  700|Homo sapiens v-myb myeloblastosis viral
           oncogene homolog (avian)-like 2 protein.
          Length = 700

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +1

Query: 175 CSHKRYCTTTVARSSTPL----SGYPHSRSSYDLDRTYRTSTPFTNRFRSF 315
           CS K   TT + R  TPL    + +      Y +D T  T TPF N    +
Sbjct: 479 CSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSMDNTPHTPTPFKNALEKY 529


>AL121886-2|CAC08392.1|  700|Homo sapiens v-myb myeloblastosis viral
           oncogene homolog (avian)-like 2 protein.
          Length = 700

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +1

Query: 175 CSHKRYCTTTVARSSTPL----SGYPHSRSSYDLDRTYRTSTPFTNRFRSF 315
           CS K   TT + R  TPL    + +      Y +D T  T TPF N    +
Sbjct: 479 CSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSMDNTPHTPTPFKNALEKY 529


>AK223482-1|BAD97202.1|  700|Homo sapiens MYB-related protein B
           variant protein.
          Length = 700

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = +1

Query: 175 CSHKRYCTTTVARSSTPL----SGYPHSRSSYDLDRTYRTSTPFTNRFRSF 315
           CS K   TT + R  TPL    + +      Y +D T  T TPF N    +
Sbjct: 479 CSQKVVVTTPLHRDKTPLHQKHAAFVTPDQKYSMDNTPHTPTPFKNALEKY 529


>AF352051-1|AAL05625.1| 1616|Homo sapiens proliferation
           potential-related protein protein.
          Length = 1616

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 208 ARSSTPLSGYPHSRSSYDLDRTYRTSTPFTNRFRSFSSRDH 330
           +RS +P SG  +SRSSY   ++   ST   +  RSF SR H
Sbjct: 508 SRSKSPYSGSSYSRSSYTYSKSRSGSTRSRSYSRSF-SRSH 547


>AB112074-1|BAC77636.1| 1792|Homo sapiens retinoblastoma binding
           protein 6 isoform 1 protein.
          Length = 1792

 Score = 31.5 bits (68), Expect = 3.0
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 208 ARSSTPLSGYPHSRSSYDLDRTYRTSTPFTNRFRSFSSRDH 330
           +RS +P SG  +SRSSY   ++   ST   +  RSF SR H
Sbjct: 684 SRSKSPYSGSSYSRSSYTYSKSRSGSTRSRSYSRSF-SRSH 723


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,547,313
Number of Sequences: 237096
Number of extensions: 1786116
Number of successful extensions: 2994
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2994
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)