Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28c11
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 32 0.46
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 3.2
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 3.2
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 3.2
Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF039051-1|AAB94263.2| 167|Caenorhabditis elegans Hypothetical ... 28 7.4
U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF016688-1|AAB66077.3| 700|Caenorhabditis elegans Hypothetical ... 27 9.8
AC025723-12|AAK29938.1| 215|Caenorhabditis elegans Hypothetical... 27 9.8
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 31.9 bits (69), Expect = 0.46
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 82 EVHEKRLRFRAEKTQLLCRNAELMRKLRSLWCSHKRYCTTTVARSSTPLSGYPHSRSSYD 261
E+ K+ ++ L R E R+ R CS K+ C TT S P S ++Y+
Sbjct: 300 EIEGKKCMLECIRSSCLPRYVECHRRRR---CSRKQRCHTTTQPPSPTTESLPTSTTTYE 356
Query: 262 LDRT-YRTST 288
++ T TST
Sbjct: 357 MNTTSLETST 366
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 70 QLLTEVHEKRLRFRAEKTQLLCRNAELMRKLRSLW 174
QL + H + +RFR+E T+ + RKL SLW
Sbjct: 172 QLQQQQHTESMRFRSENTRYRNQTETQHRKLISLW 206
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 70 QLLTEVHEKRLRFRAEKTQLLCRNAELMRKLRSLW 174
QL + H + +RFR+E T+ + RKL SLW
Sbjct: 172 QLQQQQHTESMRFRSENTRYRNQTETQHRKLISLW 206
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 70 QLLTEVHEKRLRFRAEKTQLLCRNAELMRKLRSLW 174
QL + H + +RFR+E T+ + RKL SLW
Sbjct: 172 QLQQQQHTESMRFRSENTRYRNQTETQHRKLISLW 206
>Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +1
Query: 55 FFISSQLLTEVHEKRLRFRAEKTQLLCRNAELMRKLRSLWCSHKRYCTTTVARSSTPLSG 234
F+ +SQ L +K + + + R +K+ ++ S R TTT R T
Sbjct: 294 FYDASQALINQKKKEELSKVDTKFTITRT---FKKMTTIPMSTTRRMTTTTIRPKTTKKY 350
Query: 235 YPHSRSSYDLDRT---YRTSTPFTNR 303
S S YD +T Y+T+T T++
Sbjct: 351 LSRSTSKYDAKKTTRSYQTTTRTTSK 376
>Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +1
Query: 55 FFISSQLLTEVHEKRLRFRAEKTQLLCRNAELMRKLRSLWCSHKRYCTTTVARSSTPLSG 234
F+ +SQ L +K + + + R +K+ ++ S R TTT R T
Sbjct: 294 FYDASQALINQKKKEELSKVDTKFTITRT---FKKMTTIPMSTTRRMTTTTIRPKTTKKY 350
Query: 235 YPHSRSSYDLDRT---YRTSTPFTNR 303
S S YD +T Y+T+T T++
Sbjct: 351 LSRSTSKYDAKKTTRSYQTTTRTTSK 376
>AF039051-1|AAB94263.2| 167|Caenorhabditis elegans Hypothetical
protein C14C6.5 protein.
Length = 167
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 86 TSVSSCELMKNYCKLF-YAFVILDQC 12
T VS C MKNYC Y ++ DQC
Sbjct: 83 TGVSDCPGMKNYCNYGPYIDIMKDQC 108
>U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical
protein C30B5.5 protein.
Length = 790
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 245 LWGYPLSGVELRATVVVQYLLWEHHKLLSFRIS 147
++G + G+ LR V ++++W H K RIS
Sbjct: 379 VYGCGIRGISLRLPVQDKFVIWRHWKRTKSRIS 411
>AF016688-1|AAB66077.3| 700|Caenorhabditis elegans Hypothetical
protein F18A12.5 protein.
Length = 700
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -3
Query: 203 VVVQYLLWEHHKLLSFRISSAFLQS-NCVFSALKRKRFS*TSVSSCE-LMKNYCKLFYAF 30
VV + L+ H R++ F +S C+ A + K +S T+ SCE K C+ +
Sbjct: 42 VVGLFTLYTFHFHSKSRVTPQFCESPQCIILAQELKAYSDTATKSCEDFYKATCENYKDH 101
Query: 29 VILDQ 15
LD+
Sbjct: 102 QALDR 106
>AC025723-12|AAK29938.1| 215|Caenorhabditis elegans Hypothetical
protein Y54F10AM.1 protein.
Length = 215
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = -1
Query: 430 DCIEHKPLPSRARHRSHRLYQ---GRDRSSFS 344
DC+EH+ L R H SH L + G ++SSF+
Sbjct: 178 DCVEHELLWHREVHSSHCLVRTAGGAEKSSFT 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,606,574
Number of Sequences: 27780
Number of extensions: 282848
Number of successful extensions: 673
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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