Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c07
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    38   9e-05
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 37.5 bits (83), Expect = 9e-05
 Identities = 28/96 (29%), Positives = 48/96 (50%)
 Frame = +3

Query: 300 YRDLLALYPDITKPASFKEVSSHNVLHYIETTGPPVHARARPLAPERYKIIKEEFRIMQE 479
           YR + +L P +T   +  E+  H+   +++   P   A    L P     I+E    M +
Sbjct: 280 YRCIFSLRPGLTHKYTH-EIKLHDKTPFLKRPYPVPFA----LRPAVDATIQE----MLD 330

Query: 480 LGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNA 587
           LG+ +   S +ASP+ +  KK+G +R C D R +N+
Sbjct: 331 LGVIKREASPYASPMTVGKKKDGTVRICLDARMINS 366


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 123 FVLADVKQAILGADFLTSNNLLVDMGERKLI 215
           FV A+V   IL   F T NN+L ++  +KLI
Sbjct: 190 FVAANV---ILKTRFKTINNILENLWAKKLI 217


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,936
Number of Sequences: 336
Number of extensions: 3495
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)