Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28c07
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 55 8e-09
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 55 8e-09
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 55 8e-09
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 55 8e-09
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 55 8e-09
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 55 8e-09
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 55 8e-09
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 55 8e-09
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 55 8e-09
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 55 8e-09
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 55 8e-09
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 33 0.047
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 29 0.76
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 28 1.3
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 28 1.3
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 1.8
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 27 1.8
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 5.4
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.1
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 55.2 bits (127), Expect = 8e-09
Identities = 28/68 (41%), Positives = 38/68 (55%)
Frame = +3
Query: 414 RARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAIT 593
R PL P + + + +E + GI R SK+ A P+ VPKK G LR DY+ LN
Sbjct: 416 RNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYV 475
Query: 594 KPDRYPIP 617
KP+ YP+P
Sbjct: 476 KPNIYPLP 483
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 32.7 bits (71), Expect = 0.047
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 432 PERYKIIKEEF-RIMQELGICRPSKSAWASP-LHIVPKKNGDLRPCGDY 572
P YK++ E R+M G +++ +A +H+ P K+G + P GDY
Sbjct: 540 PVSYKLVSRETPRLMARPGSLVSNRAGFARHHIHVTPYKDGQIYPAGDY 588
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 28.7 bits (61), Expect = 0.76
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 189 VDMGERKLIDKVTDL-NVLACIVVS--NQPSLHTVDVSHPYRDLLALYPDITKPASF 350
+D R+ + K DL NVLA I VS N P L+ D+ L P+ T PASF
Sbjct: 572 IDRDYRESLTKTLDLINVLASIKVSDGNYPDLNV--------DIKTLEPEYTSPASF 620
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 450 IKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAITKP 599
+ E+ +I+ EL + P+ S ++ L NGD GDY L KP
Sbjct: 86 VDEQDKILSELQLAYPTVSRYSETLD-KGLLNGDKTTKGDYTSLRRFRKP 134
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 396 GPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWAS 518
GP V+ +++PL R++ E F I+ E+ C S + S
Sbjct: 125 GPKVNPKSQPLVIIRHRASDEHFEIVNEILSCFKSSVVYLS 165
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -1
Query: 247 QANTFRSVTLSISLRSPISTKRLLEVKKSAPNIACLTSASTKFHRKARRSFKSSTNVFSP 68
Q N F S +L + SPI TKR +E + PN + + RKA + K S N+
Sbjct: 440 QINPF-SPSLRLKGGSPI-TKREIEFCRDLPNRPTSSEPNQGDTRKAGKRLKYSRNLDDY 497
Query: 67 NVAISVP 47
++ +P
Sbjct: 498 HICTQIP 504
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 75 KTLVLDLKLRRAFRWNFVLADVKQAILGADFLTSNNLLVDMGERK 209
K ++LD R + N +L + DFLTS +L +M ERK
Sbjct: 228 KYIILDYSFRD-IKNNSILTSKESRKAVIDFLTSKTILENMAERK 271
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 544 FFLGTICNGLAQALLEGRQIPNSCM 470
FF+ +C L+ LL QIP C+
Sbjct: 1467 FFMCPLCRSLSNVLLPMPQIPKMCL 1491
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 306 DLLALYPDITKPASFKEVSSHNVLHYIETTGPPVHARAR 422
DL YPD + S E++ V+H I+ T +H + +
Sbjct: 95 DLKQKYPDAAEYISKIEINGGKVMHEIDATKLHLHKKLK 133
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -1
Query: 142 LTSASTKFHRKARRSFKSSTN--VFSP 68
+ AS KF++ R +FKSST V++P
Sbjct: 2693 IVKASVKFYQVLRENFKSSTQGYVYTP 2719
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,475
Number of Sequences: 5004
Number of extensions: 54729
Number of successful extensions: 171
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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