Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28c07
(649 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein. 41 0.003
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 41 0.003
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro... 41 0.003
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 41 0.003
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 41 0.003
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 41 0.003
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 41 0.003
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 41 0.003
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 41 0.003
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 41 0.003
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 41 0.004
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 41 0.004
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 41 0.004
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 40 0.010
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 38 0.023
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 38 0.023
M74509-1|AAA73090.1| 395|Homo sapiens protein ( Human endogenou... 38 0.031
AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein. 36 0.12
AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein. 33 0.66
L22005-1|AAC37534.1| 298|Homo sapiens ubiquitin conjugating enz... 30 6.2
>DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein.
Length = 135
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 19 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 78
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 79 RAVNAVIQP 87
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 30 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 89
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 90 RAVNAVIQP 98
>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1117
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 953 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 1012
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 1013 RAVNAVIQP 1021
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 953 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 1012
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 1013 RAVNAVIQP 1021
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 13 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 72
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 73 RAVNAVIQP 81
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 13 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 72
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 73 RAVNAVIQP 81
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 13 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 72
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 73 RAVNAVIQP 81
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 29 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 88
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 89 RAVNAVIQP 97
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 30 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 89
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 90 RAVNAVIQP 98
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 30 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 89
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 90 RAVNAVIQP 98
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 40.7 bits (91), Expect = 0.004
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 30 TERPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 89
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 90 RAVNAVIQP 98
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 40.7 bits (91), Expect = 0.004
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 953 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 1012
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 1013 RAVNALIQP 1021
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 40.7 bits (91), Expect = 0.004
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G R D
Sbjct: 29 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDL 88
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 89 RAVNALIQP 97
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 39.5 bits (88), Expect = 0.010
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +3
Query: 393 TGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDY 572
T PV PL ++ + + E G PS S W SP+ ++ KK+G D
Sbjct: 953 TEKPVWVNQWPLPKQKLEALHLLANEQLEKGHIEPSFSPWNSPVFVIQKKSGKWHTLTDL 1012
Query: 573 RQLNAITKP 599
R +NA+ +P
Sbjct: 1013 RAVNAVIQP 1021
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 38.3 bits (85), Expect = 0.023
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 477 ELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAITKP 599
E G PS S W SP+ ++ KK+G R D R +NA+ +P
Sbjct: 58 EKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAVIQP 98
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 38.3 bits (85), Expect = 0.023
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 477 ELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAITKP 599
E G PS S W SP+ ++ KK+G R D R +NA+ +P
Sbjct: 981 EKGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNAVIQP 1021
>M74509-1|AAA73090.1| 395|Homo sapiens protein ( Human endogenous
retrovirus type C oncovirus sequence. ).
Length = 395
Score = 37.9 bits (84), Expect = 0.031
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +3
Query: 357 VSSHNVLHYIETTGPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVP 536
V+ VL ++ PV + P+ E + I+ + ++ I P +S W +PL VP
Sbjct: 149 VNQAPVLIEVKPGVQPVRQKQYPVLREALEGIQVHLKCLRTFRIIVPCQSPWNTPLLPVP 208
Query: 537 KK-NGDLRPCGDYRQLNAITKPDRYPIPRLHDFTYIL 644
K D RP D R +N T +P L+ +L
Sbjct: 209 KPGTKDYRPVQDLRLVNQATVTLHPTVPNLYTLLGLL 245
>AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein.
Length = 863
Score = 35.9 bits (79), Expect = 0.12
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 423 PLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAITKP 599
PL E+ + + E G +PS S W +P+ ++ KK+G + D R +N +P
Sbjct: 32 PLTQEKLAAVNDIVLQQLEAGHLQPSTSPWNTPVFVIKKKSGKYQLLHDLRAVNQQMQP 90
>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
Length = 1183
Score = 33.5 bits (73), Expect = 0.66
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Frame = +3
Query: 129 LADVKQAILGADFLTSNNLLVDMGER-KLIDKVTDLNVLACIVVSNQPS--LHTVDVSHP 299
+ D +LG D L+ + E L+ K+ V+ + V + L +
Sbjct: 70 MPDCPLPLLGRDLLSKLRATISFTEHGSLLLKLPGTGVIMTLTVPREEEWRLFLTESGQE 129
Query: 300 YRDLLAL-YPDI---TKPASFKEVSSHNVLHYIETTGPPVHARARPLAPERYKIIKEEFR 467
R LA +P + P V+ VL ++ PV + P+ E + I+ +
Sbjct: 130 IRPALAKRWPRVWAEDNPPGLA-VNQAPVLIEVKPGAQPVRQKQYPVPREALEGIQVPLK 188
Query: 468 IMQELGICRPSKSAWASPLHIVPK-KNGDLRPCGDYRQLNAIT 593
++ G+ P +S W +PL VP+ K D P D R + T
Sbjct: 189 CLRTFGMIVPCQSPWNTPLLPVPEPKTKDYWPGQDLRLVKQAT 231
>L22005-1|AAC37534.1| 298|Homo sapiens ubiquitin conjugating enzyme
protein.
Length = 298
Score = 30.3 bits (65), Expect = 6.2
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 324 PDITKPASFKEVSSHNVLHYIETTGPPVHARARPLAPERYKIIKEEFRIMQE 479
PD +P +E++ T GP A ARPL P K + E + +QE
Sbjct: 33 PDGARPGPSRELAVVARPRAAPTPGPSAAAMARPLVPSSQKALLLELKGLQE 84
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,998,866
Number of Sequences: 237096
Number of extensions: 1853663
Number of successful extensions: 3249
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3247
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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