Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28c07
(649 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 62 5e-10
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 62 8e-10
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 59 4e-09
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 59 6e-09
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 57 2e-08
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 56 3e-08
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 54 2e-07
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 53 3e-07
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 53 3e-07
AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated po... 52 5e-07
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 51 2e-06
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 51 2e-06
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 51 2e-06
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 51 2e-06
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 51 2e-06
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 50 3e-06
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 50 3e-06
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 49 5e-06
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 49 5e-06
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 49 5e-06
AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p pro... 49 6e-06
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 48 8e-06
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 47 2e-05
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 47 2e-05
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 46 3e-05
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 44 1e-04
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 42 7e-04
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 40 0.002
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 40 0.002
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 37 0.027
AE014297-1204|AAF54559.2| 2762|Drosophila melanogaster CG14692-P... 29 7.2
BT011094-1|AAR82760.1| 870|Drosophila melanogaster RE31380p pro... 28 9.5
AE013599-4028|AAM68331.1| 863|Drosophila melanogaster CG9380-PB... 28 9.5
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 62.5 bits (145), Expect = 5e-10
Identities = 30/75 (40%), Positives = 46/75 (61%)
Frame = +3
Query: 405 VHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLN 584
V R L+PE ++++ + + I RPS S +ASP+ +V KKNG R C D+R+LN
Sbjct: 458 VQRRPYRLSPEEREVVRMQVSELIRCNIVRPSCSPFASPMLLVKKKNGTDRLCVDFRELN 517
Query: 585 AITKPDRYPIPRLHD 629
+ T D+YP+P + D
Sbjct: 518 SNTISDKYPLPLISD 532
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 61.7 bits (143), Expect = 8e-10
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +3
Query: 477 ELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNAITKPDRYPIPRLHD 629
E G RPS S +ASP+ +V KK GDLR C D+R+LN +T D YP+P + D
Sbjct: 741 ENGFIRPSDSEYASPIVLVKKKTGDLRMCVDFRKLNKMTMKDNYPLPLIDD 791
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 59.3 bits (137), Expect = 4e-09
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Frame = +3
Query: 303 RDLLALYPDITKPASFKEVSSHNVLHYIETT-GPPVHARARPLAPERYKIIKEEFRIMQE 479
+ LL + ++ K ++ + H + TT P++++ PLA ++ + + M
Sbjct: 172 KGLLNKFRNLEYKEGEKLTFTNTIKHVLNTTHNSPIYSKQYPLAQTHEIEVENQVQEMLN 231
Query: 480 LGICRPSKSAWASPLHIVPKKN-----GDLRPCGDYRQLNAITKPDRYPIPRLHD 629
G+ R S S + SP +VPKK R DYR+LN IT PDRYPIP + +
Sbjct: 232 QGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDE 286
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 58.8 bits (136), Expect = 6e-09
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Frame = +3
Query: 123 FVLADVKQ--AILGADFLTSNNLLVDMGERKLI-DKVTDLNVLACIVVSNQPSL---HTV 284
FVL ++ I+G D L +VD LI + +LA ++ P L H
Sbjct: 23 FVLPNLHSFDGIIGDDTLKDLKAIVDRKNNCLIITPGIKIPLLARASINVNPLLAAEHPD 82
Query: 285 DVSHPYRDLLALYPDITKPA-SFKEVSSHNVLHYIETTGPPVHARARPLAPERYKIIKEE 461
LL +P I +P S V + T P++A++ P ++ +
Sbjct: 83 GTQEILNSLLGEFPRIFEPPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQ 142
Query: 462 FRIMQELGICRPSKSAWASPLHIVPKK---NGD--LRPCGDYRQLNAITKPDRYPIPRLH 626
+ + GI RPS S + SP+ IVPKK NG+ R D+++LN +T PD YPIP ++
Sbjct: 143 IDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDIN 202
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 56.8 bits (131), Expect = 2e-08
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Frame = +3
Query: 309 LLALYPDITKPASFKEVSSHNVLHYIETT-GPPVHARARPLAPERYKIIKEEFRIMQELG 485
LL + D+ + ++NV H I T+ PV+ + AP ++ + + M + G
Sbjct: 122 LLKEFQDLQYKKGDQLTFTNNVKHTIRTSHNDPVYRKPYGYAPGLDTEVENQIKEMLDQG 181
Query: 486 ICRPSKSAWASPLHIVPKK---NGD--LRPCGDYRQLNAITKPDRYPIPRLHD 629
I R S S + SP+ +VPKK +G R DYR LN IT D+YPIP + +
Sbjct: 182 IIRESNSPYCSPIVVVPKKPDISGQKKYRIAIDYRYLNEITIADKYPIPNMDE 234
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 56.4 bits (130), Expect = 3e-08
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Frame = +3
Query: 306 DLLALYPDITKPASFKEVSSHNVLHYIETT-GPPVHARARPLAPERYKIIKEEFRIMQEL 482
+LL + DI K ++ H I TT PV+++ + ++ + + M E
Sbjct: 136 NLLTRFKDIQFHEGDKLSFTNQEKHTINTTHNIPVYSKMYSFQQSYEQEVERQIQEMLEQ 195
Query: 483 GICRPSKSAWASPLHIVPKK---NGD--LRPCGDYRQLNAITKPDRYPIPRLHD 629
GI R S S + SP+ +VPKK +G LR DYR+LN IT DRYP+P + +
Sbjct: 196 GIIRESSSPYCSPIWVVPKKLDASGQQKLRIVIDYRKLNEITINDRYPMPNIDE 249
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 53.6 bits (123), Expect = 2e-07
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Frame = +3
Query: 363 SHNVLHYIETT-GPPVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPK 539
++ + H I T P+H ++ +K++ M + I R S S W++P+ +VPK
Sbjct: 302 TNKITHSIPTIDNTPIHTKSYRYPFVHKTEVKKQIESMLDQQIIRSSHSPWSAPVWVVPK 361
Query: 540 K-----NGDLRPCGDYRQLNAITKPDRYPIPRLHD 629
K N R DYR+LN T DRYPIP ++D
Sbjct: 362 KLDGTGNRKWRLVIDYRKLNDKTISDRYPIPNIND 396
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 53.2 bits (122), Expect = 3e-07
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Frame = +3
Query: 363 SHNVLHYIETTGP-PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPK 539
++ + H I+TT P+H ++ + +K++ M I + S S W++P+ +VPK
Sbjct: 188 TNKITHTIKTTDDTPIHTKSYRYPYIHKEEVKKQIEAMLNQDIIKSSYSPWSAPVWVVPK 247
Query: 540 K---NGDL--RPCGDYRQLNAITKPDRYPIPRLHD 629
K G+ R DYR+LN T DRYPIP + D
Sbjct: 248 KITPTGEQKWRLVIDYRKLNEKTISDRYPIPNIAD 282
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 53.2 bits (122), Expect = 3e-07
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Frame = +3
Query: 321 YPDITKPASFKEVSSHNVLHYIETTGP-PVHARARPLAPERYKIIKEEFRIMQELGICRP 497
Y DI + + H I+T PV+ + + + ++ + M E GI R
Sbjct: 252 YRDIQYKEGENLTFTSTIKHVIQTQHEDPVYRKPYKYPQSVDQEVNKQIKEMIEQGIVRK 311
Query: 498 SKSAWASPLHIVPKK-----NGDLRPCGDYRQLNAITKPDRYPIPRLHD 629
SKS + SP+ +VPKK R DYR LN IT D++PIPR+ +
Sbjct: 312 SKSPYCSPIWVVPKKADASGKQKFRLVVDYRNLNEITVNDKFPIPRMDE 360
>AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated pol
protein protein.
Length = 407
Score = 52.4 bits (120), Expect = 5e-07
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Frame = +3
Query: 363 SHNVLHYIETTGP-PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPK 539
S+ + H I TT P+H ++ ++++ M E I + S S W++P+ +VPK
Sbjct: 170 SNAIKHSIPTTDNIPIHTKSYRYPFVHKDEVRKQISKMLEQNIIKNSHSPWSAPVWVVPK 229
Query: 540 KNGDL-----RPCGDYRQLNAITKPDRYPIPRLHD 629
K+ ++ R D+R+LN T DRYPIP + D
Sbjct: 230 KSDNIGEKKWRLVIDFRKLNEKTVSDRYPIPNIAD 264
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 50.8 bits (116), Expect = 2e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK------NGDLRPC 563
PV++RA P + E + + + GI RPS+S + SP +V KK N + R
Sbjct: 161 PVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDASGNPNKRLV 220
Query: 564 GDYRQLNAITKPDRYPIPRL 623
D+R+LN T PDRYP+P +
Sbjct: 221 IDFRKLNEKTIPDRYPMPSI 240
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 50.8 bits (116), Expect = 2e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK------NGDLRPC 563
PV++RA P + E + + + GI RPS+S + SP +V KK N + R
Sbjct: 156 PVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLV 215
Query: 564 GDYRQLNAITKPDRYPIPRL 623
D+R+LN T PDRYP+P +
Sbjct: 216 IDFRKLNEKTIPDRYPMPSI 235
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 50.8 bits (116), Expect = 2e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK------NGDLRPC 563
PV++RA P + E + + + GI RPS+S + SP +V KK N + R
Sbjct: 191 PVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLV 250
Query: 564 GDYRQLNAITKPDRYPIPRL 623
D+R+LN T PDRYP+P +
Sbjct: 251 IDFRKLNEKTIPDRYPMPSI 270
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 50.8 bits (116), Expect = 2e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK------NGDLRPC 563
PV++RA P + E + + + GI RPS+S + SP +V KK N + R
Sbjct: 191 PVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLV 250
Query: 564 GDYRQLNAITKPDRYPIPRL 623
D+R+LN T PDRYP+P +
Sbjct: 251 IDFRKLNEKTIPDRYPMPSI 270
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 50.8 bits (116), Expect = 2e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK------NGDLRPC 563
PV++RA P + E + + + GI RPS+S + SP +V KK N + R
Sbjct: 609 PVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLV 668
Query: 564 GDYRQLNAITKPDRYPIPRL 623
D+R+LN T PDRYP+P +
Sbjct: 669 IDFRKLNEKTIPDRYPMPSI 688
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 50.0 bits (114), Expect = 3e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK------NGDLRPC 563
PV++RA P + E + + + GI RPS+S + SP +V KK N + R
Sbjct: 156 PVYSRAYPNLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLV 215
Query: 564 GDYRQLNAITKPDRYPIPRL 623
D+R+LN T PDRYP+P +
Sbjct: 216 IDFRKLNERTIPDRYPMPSI 235
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 50.0 bits (114), Expect = 3e-06
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK------NGDLRPC 563
PV++RA P + E + + + GI RPS+S + SP +V KK N + R
Sbjct: 156 PVYSRAYPNLMGVSDFVNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLV 215
Query: 564 GDYRQLNAITKPDRYPIPRL 623
D+R+LN T PDRYP+P +
Sbjct: 216 IDFRKLNERTIPDRYPMPSI 235
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 49.2 bits (112), Expect = 5e-06
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Frame = +3
Query: 309 LLALYPDITKPASFKEVSSHNVLHYIETT-GPPVHAR-ARPLAPERYKIIKEEFRIMQEL 482
LL Y DI K ++ H I T P++++ + P A E+ ++ + + M
Sbjct: 176 LLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKYSYPQAYEQE--VESQIQDMLNQ 233
Query: 483 GICRPSKSAWASPLHIVPKKNG-----DLRPCGDYRQLNAITKPDRYPIPRLHD 629
GI R S S + SP+ +VPKK R DYR+LN IT DR+PIP + +
Sbjct: 234 GIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDE 287
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 49.2 bits (112), Expect = 5e-06
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +3
Query: 483 GICRPSKSAWASPLHIVPKK-----NGDLRPCGDYRQLNAITKPDRYPIPRLHD 629
GI RPS+S + SP+ IVPKK R DYR+LN +T DRYPIP +++
Sbjct: 222 GIIRPSRSPYNSPVWIVPKKLDSSGKKKYRVVIDYRKLNMVTVADRYPIPDINE 275
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 49.2 bits (112), Expect = 5e-06
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +3
Query: 483 GICRPSKSAWASPLHIVPKK-----NGDLRPCGDYRQLNAITKPDRYPIPRLHD 629
GI RPS+S + SP+ IVPKK R DYR+LN +T DRYPIP +++
Sbjct: 65 GIIRPSRSPYNSPVWIVPKKLDSSGKKKYRVVIDYRKLNMVTVADRYPIPDINE 118
>AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p
protein.
Length = 1026
Score = 48.8 bits (111), Expect = 6e-06
Identities = 27/74 (36%), Positives = 40/74 (54%)
Frame = +3
Query: 408 HARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNA 587
H R L+ E +K++ E I R S S AS + +V KK+G LR C DYR+LN
Sbjct: 185 HGHTR-LSEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVKKKDGTLRVCVDYRKLNT 243
Query: 588 ITKPDRYPIPRLHD 629
+ D +P+P + +
Sbjct: 244 MVLMDCFPVPIMEE 257
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/74 (36%), Positives = 40/74 (54%)
Frame = +3
Query: 408 HARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQLNA 587
H R L+ E +K++ E I R S S AS + +V KK+G LR C DYR+LN
Sbjct: 491 HGHTR-LSEEEAIAVKKQVEEWVEQSIVRKSTSNVASRIVVVRKKDGTLRVCVDYRKLNT 549
Query: 588 ITKPDRYPIPRLHD 629
+ D +P+P + +
Sbjct: 550 MVLMDCFPVPIMEE 563
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 47.2 bits (107), Expect = 2e-05
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 21/180 (11%)
Frame = +3
Query: 147 AILGADFLTSNNLLVDMGERKLI--DKVTDLNVLAC----------IVVSNQPS--LHTV 284
AI+G D L N +D + L ++V + L C IVV NQ S HT+
Sbjct: 96 AIIGLDLLKQGNATLDFKNKTLNINNEVESIQFLRCDSVNFANIENIVVPNQISNKFHTM 155
Query: 285 DVSHPYRDLLALYPDITKPASFKEVSSHNVLHYIETTGP-PVHARARPLAPERYKIIKEE 461
R+ LA++ + + + N++ I T P++++ P + +E
Sbjct: 156 -----LRNRLAVFAEPEEALPYNT----NIVATIRTEDDQPIYSKLYPYPMGVSDFVNKE 206
Query: 462 FRIMQELGICRPSKSAWASPLHIVPKKNGD------LRPCGDYRQLNAITKPDRYPIPRL 623
+ + GI RPS S + +P+ +V KK D R D+R+LN T D+YPIP +
Sbjct: 207 THALLKDGIIRPSSSPYNNPVWVVDKKGTDEEGNTKKRLVIDFRKLNLKTIDDKYPIPNV 266
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1013
Score = 47.2 bits (107), Expect = 2e-05
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGD------LRPC 563
P++A+ P + E + + + GI + SKS + +P+ +V KK D +R
Sbjct: 158 PIYAKLYPYPMGAADFVNGEIQELLKNGIIQKSKSPYNNPIWVVDKKGTDDAGNKKMRLV 217
Query: 564 GDYRQLNAITKPDRYPIPRL 623
D+R+LN T PDRYP+P +
Sbjct: 218 LDFRKLNERTVPDRYPMPNI 237
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 46.4 bits (105), Expect = 3e-05
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK-----NGDLRPCG 566
P++ R + ++ + + M GI R S S + SP+ +VPKK R
Sbjct: 195 PIYRRPYKYPQSFDEEVENQMKDMIRQGIIRKSNSPYCSPVWVVPKKPDASGKSKFRIVI 254
Query: 567 DYRQLNAITKPDRYPIP 617
DYR LN IT D+YPIP
Sbjct: 255 DYRNLNEITVDDKYPIP 271
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 44.4 bits (100), Expect = 1e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = +3
Query: 402 PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK------NGDLRPC 563
PV+ + +A + I + + + + GI PS S + SPL +VPKK R
Sbjct: 69 PVYIKNYRMADSQKPEIARQVKKLIDDGIVEPSMSEYNSPLLLVPKKPLPNSTEKRWRLA 128
Query: 564 GDYRQLNAITKPDRYPIPRLHD 629
DYRQ+N D++P+PR+ D
Sbjct: 129 VDYRQINKKLLSDKFPLPRIED 150
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 41.9 bits (94), Expect = 7e-04
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 432 PERYKI-IKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDL-----RPCGDYRQLNAIT 593
PE +K + + M + GI R SKS + SPL +V KK R DYR+LN T
Sbjct: 141 PEIHKDEVNRQIAEMLDQGIIRHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKET 200
Query: 594 KPDRYPIPRLHD 629
DR+PIP + +
Sbjct: 201 IEDRFPIPNIDE 212
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +3
Query: 408 HARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK---NGDLRPCG---D 569
H++ + + K+IK++ I PS S + SPL +VPKK N D + D
Sbjct: 324 HSQVEEIQAQVQKLIKDK--------IVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVID 375
Query: 570 YRQLNAITKPDRYPIPRLHD 629
YRQ+N D++P+PR+ D
Sbjct: 376 YRQINKKLLADKFPLPRIDD 395
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Frame = +3
Query: 408 HARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKK---NGDLRPCG---D 569
H++ + + K+IK++ I PS S + SPL +VPKK N D + D
Sbjct: 87 HSQVEEIQAQVQKLIKDK--------IVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVID 138
Query: 570 YRQLNAITKPDRYPIPRLHD 629
YRQ+N D++P+PR+ D
Sbjct: 139 YRQINKKLLADKFPLPRIDD 158
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 36.7 bits (81), Expect = 0.027
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +3
Query: 486 ICRPSKSAWASPLHIVPKKN------GDLRPCGDYRQLNAITKPDRYPIPRLHD 629
I P+ S + SPL +VPKK+ R DYRQ+N D++P+PR+ D
Sbjct: 236 IVEPAVSEYNSPLLLVPKKSLPDSKEKKWRLVIDYRQINKKLLADKFPLPRIDD 289
>AE014297-1204|AAF54559.2| 2762|Drosophila melanogaster CG14692-PA
protein.
Length = 2762
Score = 28.7 bits (61), Expect = 7.2
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +3
Query: 303 RDLLALYPDITKPASFKEVSSHN---VLHYIETTGPPVHARARPLAPERYKIIKEE-FRI 470
++L ++ ++ KP ++ + N +ET PP++ P+R K +K + F+
Sbjct: 2024 QELASVSAEVEKPMDASKLPTENRRDEKQVVETISPPINLTQLSAEPKRVKELKSDGFQE 2083
Query: 471 MQELGICR-PSKSAWASPLHIVPKKNGDLRPCGDYRQLNAITKP 599
++ L KS+ SP I DL+P ++L I KP
Sbjct: 2084 IENLSNANFNPKSSTKSPDEI------DLQPLEQAQKLVEIEKP 2121
>BT011094-1|AAR82760.1| 870|Drosophila melanogaster RE31380p
protein.
Length = 870
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 452 NYFISLRCQWSSTSMHRWTSSFNIMQNVMRT 360
NY + QW++T+ +T FN + NV+RT
Sbjct: 562 NYITDVYQQWNATTQATYTQGFN-LPNVLRT 591
>AE013599-4028|AAM68331.1| 863|Drosophila melanogaster CG9380-PB,
isoform B protein.
Length = 863
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 452 NYFISLRCQWSSTSMHRWTSSFNIMQNVMRT 360
NY + QW++T+ +T FN + NV+RT
Sbjct: 555 NYITDVYQQWNATTQATYTQGFN-LPNVLRT 584
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,949,172
Number of Sequences: 53049
Number of extensions: 581409
Number of successful extensions: 1331
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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