Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c07
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    58   4e-09
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    58   4e-09
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    58   4e-09

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/74 (33%), Positives = 44/74 (59%)
 Frame = +3

Query: 402  PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQL 581
            P+  + RP+       I++  + M    + R SKS W+SP+ +V KK+G +R C DYR++
Sbjct: 1028 PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 1087

Query: 582  NAITKPDRYPIPRL 623
            N + K + +P+P +
Sbjct: 1088 NKVVKNNAHPLPNI 1101


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/74 (33%), Positives = 44/74 (59%)
 Frame = +3

Query: 402  PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQL 581
            P+  + RP+       I++  + M    + R SKS W+SP+ +V KK+G +R C DYR++
Sbjct: 931  PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 990

Query: 582  NAITKPDRYPIPRL 623
            N + K + +P+P +
Sbjct: 991  NKVVKNNAHPLPNI 1004


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 25/74 (33%), Positives = 44/74 (59%)
 Frame = +3

Query: 402  PVHARARPLAPERYKIIKEEFRIMQELGICRPSKSAWASPLHIVPKKNGDLRPCGDYRQL 581
            P+  + RP+       I++  + M    + R SKS W+SP+ +V KK+G +R C DYR++
Sbjct: 942  PIRQKPRPIPLALKPEIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKV 1001

Query: 582  NAITKPDRYPIPRL 623
            N + K + +P+P +
Sbjct: 1002 NKVVKNNAHPLPNI 1015


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,487,132
Number of Sequences: 27780
Number of extensions: 304728
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)