Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c07
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    26   0.36 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   5.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 479 FLHDPKFLLNYFISLRCQWSSTSMHR 402
           ++++P++ L Y  S +C W+ TS HR
Sbjct: 55  YIYNPRYPLPYSGS-KCTWTITSYHR 79


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = -3

Query: 545 IFLGDNM*RASPSTFRRPTNTQFLHDPKFLLNYFISLRCQWSSTSMHRWTS 393
           + LG  M      T  R      LH   FL  YF S+R   S     RW S
Sbjct: 44  VCLGSVMQLPIHGTEPRSKEEILLHAKDFLEQYFSSIRRLNSEAHRIRWES 94


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 234 NVLACIVVSNQPSLHT 281
           N++ CIV+   PS+ T
Sbjct: 51  NIITCIVIWRNPSMQT 66


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 234 NVLACIVVSNQPSLHT 281
           NV  C+V++   S+HT
Sbjct: 71  NVSTCVVIARNKSMHT 86


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 499 LKVLGLARYILSPRKMET*DHVVIIV 576
           +K+LG   Y +S   +E  DH V+ V
Sbjct: 317 IKILGDCYYCISGAPIERPDHAVLCV 342


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 366 HNVLHYIETTGPPVHARARP 425
           H  LH+ ++T P   A+A+P
Sbjct: 811 HQQLHHHQSTHPQAQAQAQP 830


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -3

Query: 587 SVQLTIITTWS*VSIFLGDNM*RA------SPSTFRRPTNTQFLHDPKF 459
           SVQL          +++GDN   A      S ++F+R T++ F  DP++
Sbjct: 187 SVQLLSCEVNGSTLVYIGDNEGFALIIYNNSDNSFQRLTSSTFASDPRY 235


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = -3

Query: 506 TFRRPTNTQFLHDPKF 459
           +F+R T++ F++DP++
Sbjct: 219 SFQRLTSSTFVYDPRY 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,294
Number of Sequences: 438
Number of extensions: 3758
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)