Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28c04
         (647 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113556-1|AAM29561.1|  171|Drosophila melanogaster RH04289p pro...   160   1e-39
AY071728-1|AAL49350.1|  171|Drosophila melanogaster RH44771p pro...   159   2e-39
AE014297-1254|AAF54602.2|  171|Drosophila melanogaster CG6666-PA...   159   2e-39
AY089360-1|AAL90098.1|  261|Drosophila melanogaster AT18465p pro...    95   1e-19
AE014297-1237|AAF54585.1|  261|Drosophila melanogaster CG6629-PA...    95   1e-19

>AY113556-1|AAM29561.1|  171|Drosophila melanogaster RH04289p
           protein.
          Length = 171

 Score =  160 bits (389), Expect = 1e-39
 Identities = 83/152 (54%), Positives = 98/152 (64%)
 Frame = +1

Query: 115 ASLSRFPARLNSVNYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQL 294
           +SL R PA    +  A A+           E  K+E    +N +L R LSPHLTIY  QL
Sbjct: 6   SSLIRSPALRQGLQMAAASRQVSMKVVSVAETQKDESFFEKNERLGRELSPHLTIYQPQL 65

Query: 295 TAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLNLSPATLFLAKVIIAAP 474
           T++LSI HR TG+ L      LG+GAL+S +DISHY+TM+EGL LS ATL   K IIA P
Sbjct: 66  TSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQLSGATLTALKFIIAYP 125

Query: 475 LGYHFANGIRHLYWDTAKGLSIKEVYSTGYAM 570
            GYH ANGIRHL WDT + L IKEVYSTGYAM
Sbjct: 126 AGYHTANGIRHLLWDTGRFLKIKEVYSTGYAM 157


>AY071728-1|AAL49350.1|  171|Drosophila melanogaster RH44771p
           protein.
          Length = 171

 Score =  159 bits (387), Expect = 2e-39
 Identities = 83/152 (54%), Positives = 98/152 (64%)
 Frame = +1

Query: 115 ASLSRFPARLNSVNYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQL 294
           +SL R PA    +  A A+           E  K+E    +N +L R LSPHLTIY  QL
Sbjct: 6   SSLIRSPALRQGLQMAAASRPVSMKVVSVAETQKDESFFEKNERLGRELSPHLTIYQPQL 65

Query: 295 TAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLNLSPATLFLAKVIIAAP 474
           T++LSI HR TG+ L      LG+GAL+S +DISHY+TM+EGL LS ATL   K IIA P
Sbjct: 66  TSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQLSGATLTALKFIIAYP 125

Query: 475 LGYHFANGIRHLYWDTAKGLSIKEVYSTGYAM 570
            GYH ANGIRHL WDT + L IKEVYSTGYAM
Sbjct: 126 AGYHTANGIRHLLWDTGRFLKIKEVYSTGYAM 157


>AE014297-1254|AAF54602.2|  171|Drosophila melanogaster CG6666-PA
           protein.
          Length = 171

 Score =  159 bits (387), Expect = 2e-39
 Identities = 83/152 (54%), Positives = 98/152 (64%)
 Frame = +1

Query: 115 ASLSRFPARLNSVNYAQAASNAPKITFVKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQL 294
           +SL R PA    +  A A+           E  K+E    +N +L R LSPHLTIY  QL
Sbjct: 6   SSLIRSPALRQGLQMAAASRPVSMKVVSVAETQKDESFFEKNERLGRELSPHLTIYQPQL 65

Query: 295 TAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLNLSPATLFLAKVIIAAP 474
           T++LSI HR TG+ L      LG+GAL+S +DISHY+TM+EGL LS ATL   K IIA P
Sbjct: 66  TSMLSICHRGTGLALGVGVWGLGLGALISSHDISHYVTMVEGLQLSGATLTALKFIIAYP 125

Query: 475 LGYHFANGIRHLYWDTAKGLSIKEVYSTGYAM 570
            GYH ANGIRHL WDT + L IKEVYSTGYAM
Sbjct: 126 AGYHTANGIRHLLWDTGRFLKIKEVYSTGYAM 157


>AY089360-1|AAL90098.1|  261|Drosophila melanogaster AT18465p
           protein.
          Length = 261

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
 Frame = +1

Query: 181 PKITF--VKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYAS 354
           P +T   + F  P +  +D RN  L R LSPHL+IY  QLT+ LS   R +G +L  +  
Sbjct: 58  PPVTLKVIPFRMPPDLPYDDRNMLLGRQLSPHLSIYKIQLTSTLSAFLRISGFVLAVFVW 117

Query: 355 ALGIGALVSQNDISHYITMIEGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGL 534
            +GI  L  Q D+  +I  +E  +     + +AKV++  P  YH   G RHL W   K L
Sbjct: 118 FVGISGLCLQGDMEGFIKKVEKCDCH-GMVTMAKVMVTMPFAYHTVAGTRHLIWYLNKFL 176

Query: 535 SIKEVYSTGY 564
           +I E+Y+TGY
Sbjct: 177 TIPEIYATGY 186


>AE014297-1237|AAF54585.1|  261|Drosophila melanogaster CG6629-PA
           protein.
          Length = 261

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
 Frame = +1

Query: 181 PKITF--VKFEPPKEEHHDVRNAKLNRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYAS 354
           P +T   + F  P +  +D RN  L R LSPHL+IY  QLT+ LS   R +G +L  +  
Sbjct: 58  PPVTLKVIPFRMPPDLPYDDRNMLLGRQLSPHLSIYKIQLTSTLSAFLRISGFVLAVFVW 117

Query: 355 ALGIGALVSQNDISHYITMIEGLNLSPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGL 534
            +GI  L  Q D+  +I  +E  +     + +AKV++  P  YH   G RHL W   K L
Sbjct: 118 FVGISGLCLQGDMEGFIKKVEKCDCH-GMVTMAKVMVTMPFAYHTVAGTRHLIWYLNKFL 176

Query: 535 SIKEVYSTGY 564
           +I E+Y+TGY
Sbjct: 177 TIPEIYATGY 186


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,517,305
Number of Sequences: 53049
Number of extensions: 545159
Number of successful extensions: 1269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)